RNA id: TCONS_00042708


Basic Information

Item Value
RNA id TCONS_00042708
length 2288
RNA type mRNA
GC content 0.45
exon number 14
gene id XLOC_021491
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 9508538 ~ 9551967 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCGCCCATATCGGTCTCTTCCGTCTGTATGTGTCAGCCTTTCAGCAGCAGCATCATCAACTCTACATCAATCCCTGCCCGAGAGAAGGGACAGCCAACAATCATCACAGGTATCCTTGTTTTGGAAAGTGGTGGTGTTAGAAGTCTACAGAGACGAAATAGAGGACGAGATCATGTTTTAGAGACCCCCATATTGGCAGCCCATTCTCTACAATGAACAATGAAGATGAGTTCTATGATGCCGTCACAGGCTTGGATTCAGACGAGTCATGTGAAGGCACATCAGAAGCCAGTTTTAAAGATGCTGTAGTGTATGACGGCGCTCAGAAGAACAATGGAGCGGTTCCACAGGAGAACGGAATTAAGAAGCGCAGGTCGTGTCTTCCTGCCCCCATGTTCTCCagaaatgattttagtgtatggAGCATTCTCAAGAAATGCATTGGACTGGAGCTGTCCAAGATCACCATGCCCATTGTGTTCAACGAGCCCCTGAGCTTTCTACAGAGACTTACTGAGTATATGGAGCACACATACCTCCTCCAGAAAGCCTGCTTACAGAGTGACTCCATAGAGAGGATGCAGACTGTAGCGGCCTTTGCTGTGTCTGCGGTCGCTTCTCAGTGGGACAGAACTGGAAAACCTTTCAACCCGCTTTTAGGAGAAACCTATGAACTCACGCGAGAGGATCAGGGTTTCAGACTAATCTCAGAGCAGGTGAGTCACCATCCGCCCATCAGTGCGTTTCACACAGAGAGTCTGATGGGCGACTTTGTTTTCCACGGATCCATCTATCCCAAACTCAAGTTCTGGGGCAAAAGTGTGGAGGCAGAACCCAAAGGGACCATCACGCTAGAGCTTCACAAGCATAAAGAGGCATACACATGGACGAACCCTTTCTGCTGTGTACACAATGTCATTCTGGGTAAACTGTGGATTGAACAGTACGGCACCGTAGAAATTATCAACCACAGCACTGGAGAGAAGTGTGTACTGAACTTTAAACCCTGTGGGATGTTTGGAAAGGAGCTTCACAGAGTTGAAGGTTACATCCAGGATAAGAGTAAGAAGAAGCGCTGTGTGATCTATGGCAAGTGGACCGAGTGCATGTGGAGTGTCGACCCACAGGCGTATGAGGCCCATCGAAAGCTCGAGAAGAAAGGCACGACAGACACTAAAAAACAGAAACAGGAGGAGCCAGAGGCTGTCAACGAGGATGCAGATGAAATGCCTGAAGTACAGGAAACTGTGGCAGTGATTCCTGGTAGCACATTATTATGGAGAATATCATCTAGACCGCCTCTTTCAGCAGAGATGTATAACTTCACTAATTTTGCAATGGCACTGAATGAGCTGGAGCCTGGCATGGAAGGAGTGCTGGCACCAACAGACTGCCGCTTACGGCCTGACATCAGAGCTATGGAGAACGGCAACATGGATGAAGCAAGTAGAGAAAAAGAGAGACTGGAAGAAAAGCAGAGAGCAGCTCGTAAGGAGAGGGCAAAAAATGAGGAGGAGTGGTCGACTAGGTGGTTTCAGTTAGGCACAAACCCATACACCGGATCACAGGACTGGCTGTACACAGGCGGCTATTTCGATAGGAAATACAGAAACTGTCCTGATATCTACTGATGAAGAGGTACAAGTTCAAAAGGCAGAGGTTTTGCCGTTATCTTCAGCACTTATGTTTATGATTGTGTCCATTTGGAAAGCATCTTCCTTCACAACCCATCAATTTCACAATGGAGGAGAAACACCGGTAGGAGATTCGATATGCCTTTTTCTGCCTTTTAGCATCCCTTTTTCAGAGCTCCAGCAAGTTCGAAGATGCTGGGGCTCAATGTAGACATAGTTATATCACATGAGCTCACCGACACGTGAGTCATGTACAGTAGACATTTAACATATGTAAACTAATTCCGGATGTGTGCGCACTGAGCCACCTCTGATCCAGATGTATGTATGTGGTAATGCATTAATGAGACAACGACAGTAATAATGTTCAGTgaatgttgatgatgatgaatggtaataatgtgtatgtgtgtgcgcttgtggAAATTCATGTAAAAagccatagattttttttttaattggcacAACATTTTGCCGTTTTCTGAATAAACCTTACAAAATATAGACTCATCATGCGTTTAATATGATGAAGCGATTAAAAAACGATAGCTCCTTTTCACTTACAGAGACTCGTGGGATGTAAAATAGGCTGATTGTACTGACATTAATGTTGTTTAATGATTACAAACAAGCtggagtgcaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006869 lipid transport biological_process
GO:0005829 cytosol cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0015485 cholesterol binding molecular_function
GO:0015248 sterol transporter activity molecular_function
GO:0032934 sterol binding molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6138 Predicted to enable cholesterol binding activity and sterol transporter activity. Predicted to act upstream of or within lipid transport. Predicted to be active in cytosol; intracellular membrane-bounded organelle; and membrane. Is expressed in several structures, including blastodisc; digestive system; nervous system; otic vesicle; and yolk syncytial layer. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 67. Orthologous to human OSBPL2 (oxysterol binding protein like 2).

Ensembl:

ensembl_id ENSDART00000010697

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044782 lncRNA upstream 104921 9396668 ~ 9403617 (+) True XLOC_021490
TCONS_00044657 lncRNA upstream 696884 8809359 ~ 8811654 (+) True XLOC_021479
TCONS_00044781 lncRNA upstream 696961 8787995 ~ 8811577 (+) False XLOC_021479
TCONS_00042690 lncRNA upstream 808545 8687571 ~ 8699993 (+) True XLOC_021478
TCONS_00044780 lncRNA upstream 2073222 7405267 ~ 7435316 (+) False XLOC_021472
TCONS_00044658 lncRNA downstream 313734 9865701 ~ 9865938 (+) True XLOC_021495
TCONS_00044783 lncRNA downstream 386278 9938245 ~ 9952826 (+) False XLOC_021497
TCONS_00044785 lncRNA downstream 386307 9938274 ~ 9952826 (+) False XLOC_021497
TCONS_00044784 lncRNA downstream 386307 9938274 ~ 9952826 (+) True XLOC_021497
TCONS_00042721 lncRNA downstream 594647 10146614 ~ 10156528 (+) True XLOC_021498
TCONS_00042707 mRNA upstream 150911 9353552 ~ 9357627 (+) True XLOC_021489
TCONS_00042702 mRNA upstream 216646 9230431 ~ 9291892 (+) False XLOC_021487
TCONS_00042701 mRNA upstream 216646 9230431 ~ 9291892 (+) False XLOC_021487
TCONS_00042700 mRNA upstream 216646 9230431 ~ 9291892 (+) False XLOC_021487
TCONS_00042705 mRNA upstream 220093 9268083 ~ 9288445 (+) True XLOC_021487
TCONS_00042711 mRNA downstream 8830 9560797 ~ 9567173 (+) False XLOC_021492
TCONS_00042712 mRNA downstream 9024 9560991 ~ 9567306 (+) False XLOC_021492
TCONS_00042713 mRNA downstream 9043 9561010 ~ 9567119 (+) False XLOC_021492
TCONS_00042714 mRNA downstream 9049 9561016 ~ 9567194 (+) False XLOC_021492
TCONS_00042715 mRNA downstream 9050 9561017 ~ 9566029 (+) True XLOC_021492
TCONS_00042706 other upstream 199977 9307574 ~ 9308561 (+) True XLOC_021488
TCONS_00042675 other upstream 2682736 6825688 ~ 6825802 (+) True XLOC_021466
TCONS_00042666 other upstream 3204264 6277175 ~ 6304274 (+) True XLOC_021459
TCONS_00042596 other upstream 5773529 3721041 ~ 3735009 (+) False XLOC_021425
TCONS_00042520 other upstream 9066186 442237 ~ 442352 (+) True XLOC_021384
TCONS_00042716 other downstream 66246 9618213 ~ 9618335 (+) True XLOC_021493
TCONS_00042717 other downstream 175443 9727410 ~ 9727432 (+) True XLOC_021494
TCONS_00042720 other downstream 594585 10146552 ~ 10158901 (+) False XLOC_021498
TCONS_00042723 other downstream 795910 10347877 ~ 10350429 (+) False XLOC_021499
TCONS_00042724 other downstream 798924 10350891 ~ 10351573 (+) True XLOC_021499

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000021_03760052_03774483.mRNA True 1650 mRNA 0.49 12 CI01000021 3759716 ~ 3774483 (-)
bowfin (Amia calva) AMCG00008064 True 1371 mRNA 0.46 12 CM030123.1 41111056 ~ 41118960 (+)