RNA id: TCONS_00042702


Basic Information

Item Value
RNA id TCONS_00042702
length 7335
RNA type mRNA
GC content 0.39
exon number 18
gene id XLOC_021487
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 9230431 ~ 9291892 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttacaaaatataattaaaaagtgAATGTAAAAATTTATTTAGTAGTCACTTACCAACCTCCAGTAACAAGCCCCGCCCATTTCAGACTTCACGTTTCACGTTGTTTCCATTCCAGCCGCCCGCATCATTTCTACGCGTCAATGGCTGTCCTTGTGCAGACGCTGAGGATCTGTAATCCACGCGTGGAGGAATGAATGATCTTACACTGCATGCACGTGTGTTTTAATTACTTGTTTGATTCAGTTAAAGGCTGCGTTTGCTGTAGACTCGGAAATGATTTGATCTTGAATCGACCTCACACAAGATAATCTCAAACCTGGGCAGACCTGCAGTCTGACAGCACTCAAGTGCATCTCTGTTTCTTTGTAAATATATTGCCATatgtggatttctgcagaatcCAAAACTTACTTCGTTTCTCCTTCAGTCGTCAGAGCAAGGTTTTTCTAGCTCAGAATAACACTTTCTAACTGCGTTTTTTGTTAGCGCGACTCGCTCTGCTCGTCCTTTTTcaaactgaattgaactgaactgaaccgaATCGCTTCTGAATCACTGAAACACAACAGTCGGCTGCTCCACTTCCAGATTCAAATCCGTATCTAGTCTGAATTCGTCTTTTGGTCGTTATTTCGGACTCAAATGCACACAGCGTCTGCAAGGGAGTGAAACTCCCACACGGAAGTGACTTACACACGTTAGGCCAGTGATTAGTCTGTGTTGTTTTAGGAGGCTTTATTATTTGCGGCCATTGacatattagttattaaaatgatcCCTGAAAAGGCACCAGGAGGGGACGTGTTACATGCGCCAGGAGACTTGAAGAAAGAAGCGCACATCCCCAGCTTCGAGAAGTACAAAGAGCTCTACATCAAATCAGTCGAGTCTCCTGAAGAGTTCTGGGCAGATGTCGCCAAAGACTTTTTCTGGAAGACGAAATACACCGGCAAGTTCCTGGACTACAACTTTGACGTGACCAAGGGTGAGATTTACATCAAGTGCATGGAAGGCGCCACAACCAACATCTGCTATAATGTGTTGGACCGCAACGTCCACGAGAGGAAACTGGGTGACCGAGTCGCTTTCTACTGGGAAGGAAATGAACCTGGAGATGAGAAGACTGTTACCTACAGAGAACTGCTTCAGCAAGTCTGCAAGTTTGCCAATGTCCTCAAGTCACAAGGCGTGAAGAAAGGTGACCGTGTTTCTATTTACATGCCCATGGTTGTGGAGCTGGTGGTGGCCATGTTGGCCTGCGCTCGGATTGGAGCAGTCCACTCTATTGTGTTTGCCGGCTTCTCCTCTGAGTCACTGTGCGAAAGGATCATGGACTCTCAATGCTGTCTTCTTATAACAGCTGATGGCTTTTACCGTGGTGATAAACTGATAAACCTGAAGCTTATAGCTGATGAGGCTCTCAAGAAATGCAGAGACAAGTCTTTCCCAGTGGAGAAATGTATAATGCTGAAACACCTCACCAAGGAGGATGAGGCATCTTCCGGCTCACTGTCGCCCCCAGCAAAACGAGCCTGTCCCGACCTACAGCAGGAGAAACAGAAAGAAAGAGTAAGGAAGGTCCGTCCCCCTCCACAGGTGCCGTGGAATCCAGAGGTCGATATGTGTTGgcactctctgattggtggagcaTCGGAGGAGTGTGAGCCTGTCTGGTGTGATTCAGAAGACCCGCTCTTCATCCTCTACACCAGCGGCTCTACTGGAAAACCTAAGGGTGTATTGCACACAGTGAGTGGATACATGCTCTACACCGCCTCCACCTTCAAGATGGTGTTTGATTATCACTCTGACGATGTTTACTGGTGCACCGCTGACATCGGCTGGATCACCGGCCACTCATACATCACGTATGGGCCCTTGGCCAATGGGGCGACCAGTGTGTTGTTTGAGGGTCTTCCAACGTACCCAGATGTGAGCCGAATGTGGGAGATTGTTGATAAATATCATGTCTCAAAGTTCTACACGGCACCCACTGCCATCCGGCTCCTGATGAAGTATGGCAGTGATCCCGTTCACAAATATAAGCGAACTTCCCTGAAGATTTTGGGTACAGTCGGTGAACCAATAAACCCTGAAGCCTGGCAGTGGTACTACAATGTGGTGGGCGAGAAGAGATGTCCGGTGGTGGACACATTCTGGCAGACTGAGACGGGTGGGCACGTGATGACGCCACTGCCAGCCGCTACGCCAATGAAGCCCGGCTCTGCTACATTTCCCTTTTTTGGGGTTGTACCTGCTATTCTGAATGAGTCAGGAGAGGAACTTGAAGGACCAAGTGAAGGCTATCTGGTGTTTAAACAGCCATGGCCAGGTGTGATGAGAACAGTATATGGGAACCATCTGAGATTTGAGACCACCTATTTCAAGAAATTTCCTGGATATTATGTGACTGGAGACGGTTGTCGCCGAGATAAAGACGGCTACTACTGGATCACTGGACGAATAGATGACATGCTGAATGTTTCTGGGCACTTACTGAGCACTGCAGAGGTGGAGTCGGCTCTGGTGGAGCATGAAGCCGTGGCGGAGGCAGCGGTTGTGGGAAGGCCTCACCCTGTCAAAGGCGAGAGTCTCTACTGTTTCGTCACCCTTAATGATGGAATAAACTACAACCAAAAGCTGGAGGCGGAGCTTAAGAAGCAAGGTAAAATCATGCGTCGGGTACTACGGAAGATAGCATGTAATGAGCGGGATCTGGGTGACGTGTCCACATTAGCGGACAGCTCCGTCATTGAACATCTGTTTGAAAACCGCTGCTATACAGCTGTGTGACCACCAGAGGCACCAAACACAACGCCGCTGTCTGGCCCAAAACAAGCTTCAGATCTGCAAGGAGTACGATCGGGTGGAATTTAGGACAACGCTAGTAGCAGAcaaaatgggggaaaataaaaaataaaaagcttagaGACACATAAATCCTACTGCTGTCTGCCAACCTTAAGAAATCTGTAGGAAACCCTAAGTTTGACAGTGGCACAGAGTTTTAACTGCTTTTTTACAAGATCCACTTGTATATTAGAAATCGTTTTACCCAGAAGTTTATTTTTCTTAGCGTTCTTGTTTTGGTTGTTTATGATTTCTTCTCTTTTCTCCATTTCctgttcatttattaatctttatATGACTGCACTGTTCTACTGTGTGCCAACATAGCCTAAATAACGGGTTATCAGTTTGTTTTTTCACCACTAAAATGAGAAATCAAGACTGTAtgtctctttttttgtgtgtgtaacttGTAACAGCGCTGTGTTAAATCGCTGCTTTGGTAGAAGGTTTACTTGTTTTAACATTCAGGCTAAATGTATAGAGCTTTCTATACAAGGCAAGGCATCCATTAACGTACCAAAATAACATGCAGATGTTTTAATTGGTATAAAATAAACcatgtttatttaaatactgGAACAGTTTGCGAAAGAGCTTTGATTGACTGCGTAAAGGCTGTTAGTCTGAAAATGTAATTAACCGGAGTTAATGCTCTGACCTTCATGATGGTTGGCGCACTGCATTTATCAAGTCATATTTGTGTTGAAATCTGCCATTTCATATTGTGAAGAAGATTTTCAGATGATTTGTTTGTTGGTGCATCTCTCATGCACCAGTATTGCATTTCTGGAttgtgtttgttattttagttgtctgatttattttctttcagcttggCATTATTTTTTCAGTGCGTTTCTCAACCCTCTTAACACTTACAAGCTTATATGATGAGCGACTGAACTTTTGAAAttaagactgtttttttttttttacctgttatttttcttttcattaattttccttgtaATCAATTCATTTGAGCAGACTAATGTCTCAAATAGAACTGGGTGAATTAAAGTGCTGAAATGCAAACAAAGTGGACTCTTTTATTTGCGTTACCTAAATTACTCATGTGTTTCTACATATTACTTATCAGACCAATAATTGATGTATGCAGTGTGAATTAATTTTATGAAGAGGTTACAAAGAAATGCATTGTATtagaaaaattataatattttcttCTTAATCAGCTATTTAAATGATTTGAAGGTTGATATGAACTGCGGCTGTTGAATATTTAGGTTTCCCACTGCGGTCACATGTATTAATtgcaatttaagatgtttgaacTAAAATCAGTTATTTCAAAATGTGATGTGTTACAATATTATTGTTTTGTCTGGTTTATtcccctgcagaaaaatccagcttaaaccagcctaggctggttttagctggtcgaccaggctggttttagaggggttttggccatttcctggcgggtttccagccatttctagcctggtcttagctggtcaggttggaaaatgaccagctaaatttAGAAATGGTTCTGCCTAgaaatggtcaaaacccctcttaaaccagcctggtggaccagctaaaaccagccaaccagcctgggctggtttaagctgtttattTCAGTAggatcatccattcattttcctttggcttggctTCAGCGGAATAaatcggcaacttatccagcatatgttttacacaggggatgcccttccagctgcaacccagttggAACCCTGTGggatccatacacacttattcaaacacacactatggccaatttatcttcttcaattcacctgaacctcatgtctttggaggaaacccatgccaactaACTTCACAAAGAAATACCacccagccgggattcaaaccaAAAACCTTCTTACGCTAAGGCGTACAGTGGTAATTACTGAGCCATTGGGTCACCTTTATCTGGTtaagtctttatttattttacattttagtttgacCAATTTTTACTATTCAAACTAACTAAAACAGCACTATTttccaaaattatatttaaaaagacaTTGTTTTTGCTACAACCTAATGTTAATATGCTGTCAGCAAGTTTTGATCTTAAAATTGTCAAATTATTCTATTAAGCCGTTTCTTTTACATAAACCGGATGATTCACACATGATTCGGATTAATCGATTCCTTTTACAAAGCTATAATACTCGTGTCATAAGGGcaatttagctaaattaattatgtCTTGTCATTTTTGGAGATACAAACTCGGATCTAAAACAACACGAAGGTTAGTGAAAATGTTTCTCTGCGactaattaaatacttttattcattcacCAATTAAAAAGGCTGTAATGTgtataaattacattttctgCCTTTTGTTATTTATTCAGACCAAAAGTCAACCATATCCTCCACAAGATGGCGGTGATGCCAAAGTGTTCGTTTTAAAAAAGACCTCTCCACAAAGGATCCAAAACAGGTTTTATTGTCACTTTCCATTGCAAAAAGCTGCTTTTCTACATGAACTGCACACGTTAATTAACCCATAAGTTCATGTTTTGGTGCTCTTGTGCTGGGTAAAGAACCCACTGGCCATCTGTTATTCAAGCCGTGTGAAAGTGATTGAATAATTCATGCTACACTGCTCAGTTTGTGTCTGGGGATCGACTGTGAGGAGCAGAGGGCGGTTTGCGTTGTGCATTAAGGTAAAAAGTAGGTTAATGATAACGTTTTTAATTTCCCAACAAGAGATGATGAAGTAATGATTGGTTTAGCCATTTAGAAACTATGATACTTTATTTTAGGAGGTATTGGAATTGAATTAAGggacagtgcacccaaaaattaatcgtttttttcttctaaataaaaatgtcaattaaaaaggTCTTCTTTCTTCTGATAGACACACGCatacacaaaatatttttaagaatgttgggaACTGGTATGCACTTGCTGTTTaaatccaaagatgcaaattaaatgtaatatcgtttcaaaataaacttaataacgggaatgttgtgtaaaacatttgaaaataaagcactgtttacatCCAATAAGTCAATGAGAACAAAATCATCAGTTTCTGCACGCTCATGGCAGCGAGGTAATACTATTGAACCACTTTGATAACAGACTTTAGGTAAGGCAGttatgacaacatttcagataatTTACAATGTTCCATCATGCctgatctgtaaaaaaaaaaaaaaaaaaacatgaaattttgatcacactgtgaaaaatgctgggtttcacacaataaagttgtgttgggacagcatgaaggaattaggttaactcgttagttttttacaaatttaggtggattgaacataaaacaatcaagttgtcattcaaaaaaaacaaattatacaaATGAGTAGTAAATGCACATgctgaaatgttttcatttatatatttttatgtttctataatatttatgcaaatttttttcttattggatAAAAGTTTGCTTGTTTGTGCGCatacatttttttcatgcaaattttcaaaatgtatgcatatCCTTGTGTTttcattaatcattttaatgttatattcctaaatttgcataaaaataggtggatgtgaacatagctattgacatacagttgaagtcaaaattattagcccccttttgattttatttaatttttttaaatatttcccaaatgatgtttaacaaagcaaggacattttcacagtatgtctgataatattttttcttctggagaaaatctgatttgttttattttggctagattaaaagcatttattaattttttaaaaaacatttttggaacaaaattatttgcccctttaagctaaattttttttccaataatctacagaacaaaccatcgttatacaataacttgcctaattaccataacctgcctagttaacttaattaacctagttaagcctttaaatgtcactttaagctgtatagaagtgtcttgaaaaatatcaagtaaaatattatttactgtcatcatgtcaaagataaaataaatccgttattagaaatgtttttaaaactattatgcttagaaatgtgctgaaacaatcttccctccattaaacagaaattggtgaaaaaatacacaggggcgctaataattcaggggggctaataattttgacttcaactgtacatagaaatattatggaagtcaatggccacGGTTTCCAGCAAtctacaaaatatcttttgtgttcaaaaggagGGAAAACCAAGTTAGGAACAAatcaagggagagtaaataatgacatttatttatttatttatttatttttatatttatttatttttatatttatttatttatttatttattgtgaactAAAGCAGATATGTCCAAACtatggcccgcgggccaaagttggcctttTGCAACCTTTGATCTGGCCCACCATTCCATTTAAGAAGAGAGGGAGCATAATGGGTTGGTGGTCTGGTGAATATCTTTGACAAATATTGTGATT

Function

GO:

id name namespace
GO:0019427 acetyl-CoA biosynthetic process from acetate biological_process
GO:0005524 ATP binding molecular_function
GO:0003987 acetate-CoA ligase activity molecular_function
GO:0016208 AMP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016874 ligase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-388 Predicted to enable CoA-ligase activity and adenyl ribonucleotide binding activity. Predicted to act upstream of or within acetyl-CoA biosynthetic process from acetate. Human ortholog(s) of this gene implicated in orofacial cleft. Orthologous to human ACSS2 (acyl-CoA synthetase short chain family member 2).

Ensembl:

ensembl_id ENSDART00000190980

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044657 lncRNA upstream 418777 8809359 ~ 8811654 (+) True XLOC_021479
TCONS_00044781 lncRNA upstream 418854 8787995 ~ 8811577 (+) False XLOC_021479
TCONS_00042690 lncRNA upstream 530438 8687571 ~ 8699993 (+) True XLOC_021478
TCONS_00044780 lncRNA upstream 1795115 7405267 ~ 7435316 (+) False XLOC_021472
TCONS_00044782 lncRNA downstream 104776 9396668 ~ 9403617 (+) True XLOC_021490
TCONS_00044658 lncRNA downstream 573809 9865701 ~ 9865938 (+) True XLOC_021495
TCONS_00044783 lncRNA downstream 646353 9938245 ~ 9952826 (+) False XLOC_021497
TCONS_00044785 lncRNA downstream 646382 9938274 ~ 9952826 (+) False XLOC_021497
TCONS_00044784 lncRNA downstream 646382 9938274 ~ 9952826 (+) True XLOC_021497
TCONS_00042698 mRNA upstream 1853 9220436 ~ 9228578 (+) False XLOC_021486
TCONS_00042699 mRNA upstream 1857 9220486 ~ 9228574 (+) True XLOC_021486
TCONS_00042697 mRNA upstream 19134 9206350 ~ 9211297 (+) True XLOC_021485
TCONS_00042696 mRNA upstream 92783 9088191 ~ 9137648 (+) True XLOC_021484
TCONS_00042694 mRNA upstream 145565 9057999 ~ 9084866 (+) False XLOC_021483
TCONS_00042707 mRNA downstream 61660 9353552 ~ 9357627 (+) True XLOC_021489
TCONS_00042708 mRNA downstream 216646 9508538 ~ 9551967 (+) False XLOC_021491
TCONS_00042709 mRNA downstream 230889 9522781 ~ 9533243 (+) False XLOC_021491
TCONS_00042710 mRNA downstream 231050 9522942 ~ 9535681 (+) True XLOC_021491
TCONS_00042711 mRNA downstream 268905 9560797 ~ 9567173 (+) False XLOC_021492
TCONS_00042675 other upstream 2404629 6825688 ~ 6825802 (+) True XLOC_021466
TCONS_00042666 other upstream 2926157 6277175 ~ 6304274 (+) True XLOC_021459
TCONS_00042596 other upstream 5495422 3721041 ~ 3735009 (+) False XLOC_021425
TCONS_00042520 other upstream 8788079 442237 ~ 442352 (+) True XLOC_021384
TCONS_00042519 other upstream 8817772 412542 ~ 412659 (+) True XLOC_021383
TCONS_00042706 other downstream 15682 9307574 ~ 9308561 (+) True XLOC_021488
TCONS_00042716 other downstream 326321 9618213 ~ 9618335 (+) True XLOC_021493
TCONS_00042717 other downstream 435518 9727410 ~ 9727432 (+) True XLOC_021494
TCONS_00042720 other downstream 854660 10146552 ~ 10158901 (+) False XLOC_021498
TCONS_00042723 other downstream 1055985 10347877 ~ 10350429 (+) False XLOC_021499

Expression Profile

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