si:ch211-236h17.3 (si:ch211-236h17.3,LOC107715024,LOC107664194,LOC107593992,LOC107707028,LOC107598729,LOC107697955)


Basic Information

Item Value
gene id si:ch211-236h17.3
gene name si:ch211-236h17.3,LOC107715024,LOC107664194,LOC107593992,LOC107707028,LOC107598729,LOC107697955
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18814757 ~ 18829293 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224665.1
ACAATGCCTTCCATCTTAGGGGAAGTCGAGTGTTCAACTGACAACATGTGACGTACCGAAGACATGTAGGTGATCAATGGACTGGGTTTCTTTTCGTAATTTACGCGACCGCTTGGAAAGCGAAGGCTCGCTGAGTCGGACCCGTGAGGTTTTTTTGGGTGAATGGTTCCTGTAACACCCGACTATAAAGCGGTCTGTTCCAGGGTAGCGTTAGACAAACGGACTGCTGCGGCTAAAGCGTGTATCGGAATTAGTTCACGCCGACTTGTTTTCTGCactctttttgtgtttctttgtaAAATGAGGAACCCGTTGGACAGACGCTTTTAGGATTGTTCTTCGGCGACAACAGCCCTTCTCGGACCTCCGTCGCCGGGCGAGAGTCAGGCATCGTCCGTTAGAGGAGTATCAGAATGATAAAGCCCAAAGTGGGTCGGATGTTTCTGGCGACATGCGTCGGCTCGTTTTTCATTCTTATATTATACTTCCAGAACATCTCAAGATCAGCTTCTGAACAGATTTCGGGCCCGAACAGTTTCTCAATTAAATCGGGAAGAAGTCCATTGCAGACACTACAAGAAAATGACCAGCTGGAGCAGTCTGCAGTGCAGGCCACTCTGCAGGGTCGAAGGGAACTCCTGGAGGAAACCTGTCACACCCACACCCGCAAAAGACGGGTACTCGGCCCAGAGGACCTCCGCCACCTCATAGTGGACGATAAACACAAGTTATTGTATTGCTATGTCCCCAAAGTGGCGTGTACAAACTGGAAACGTGTGTTGATGGTGCTAACAGGAGATGGACGCTATCGCGAACCACTGGCTATTCCGGCAAATGAGGCTCACGTAGCGGGCAACCTGCGTTCGCTCTCAGAGTACTCCACAGCTGAGATCAACAAGCGCTTACGCACATATCTGAAGTTCGTCTTTGTGCGCGAACCCTTCGAGAGACTTGTCTCGGCATATCGCAACAAGTTTACCCGCAGCTACAACACAGCCTTCCATAAACGCTACGGGACCAAAATCATCCGGAGGCATCGTGCGGACCCCCAGCCTGAAGCGCTGGAAAAAGGCAACGACGTCTCCTTCGAGgaatttgtgtattatttagtAGACCCCCAGACTCAGAGAGAGGAACCATTCAATGAGCACTGGGAAAGGGTTCACTCGCTTTGCCACCCTTGCTTGATTCATTATGACGTGGTGGGTAAGTATGAGACTCTTGCGCAAGATTCCCGCTACATCCTGAAGTTGGCAGGTGCCGAAGGAGAGGTCAAATTCCCGACCACGTCCAAAAGCACCAGGACCACCGGTGACATGGCTGCCAAATTATTCGACAATATCAGTCCGTTTTACCAGAAAAAACTCTTCAACCTTTACCGAATGGACTTCTTGCTTTTTAACTACTCTGTGCCAGCATACTTGAAGTTGAGATGAAGGTTTCAGCAAGTTTCAACTCCTCCATATCGTAGGTCTTGCGGGCACTGTTGCTTAAACTTTCGTTCTTGTGTCTGGATTCGAGTGAATTTCCTGAGGGAACCTATAGAGGATGCGGCTTGGATATGGCATCACCCTCGCTCCCTCGAGGTTAAATTCAGCATTCTAAACAGATAAGTGCTGGCTGGGGTGTTGCATCCCATCTCAAAAGTCCACTAAATAATGTCTGTAATTCCTCTGGCTTTAATAACTTGCGACCGAGCTCCAAGTATGTGCCTTTGTCCTTCTGAATGTTGATAAGTGAAGCGGGATTCTTCATCATCAGATAAATGCTATGAATGTTTCATCTCTTTTAATCTTCACCACCCAAAAGGATATTTATGGTATTGTTTACGTAGCATATTTATTGAGGATTTTGCTCTTGAACTGGAACCAGCAAAGCCTTGACTTTAATCTCGGAGAGATTCCTTGAAGCTGATCTCAAAGCCTCCTTTTTAACATTCCCTGGATATGATTTCAGACCTTAACCTTACTCCCAATCACAAAAGTAGTTTCCAAGTCACAAACTTTCAGCTGTTTCAAGCAGATAGCTGGTACCATGTTGGAAGGTGTCGAGGGTAAGAGGTGAATTTTCGACTTCTCCTGCCTTTGCAAACTTGACAAGGCTGTCTACCTTGGCCGGTTCAGCTACTCTGGAAAGAAATGGTGTTCTCACAGAGTCACCCCTTTATTTATCATGCAACGGGCTGGGTAAACAGTGCATAGCTGTGGCTGGAGAAAGGTGGACCCTCATCAGTGCAGCTCTTGTTAAGCTATAGATGCAGGGAGAAGTGCAAACTACTCACTGGGCATTGCAGGTCAAACATCAGCATGATCCTGGGAGGAAACACTCGTCTTATGAATTTATAATAAGGGTTGAAGTgcaataaaggtttttaaagagGTACCAGTGTGTGCTTTGAGGATTATCTATCCCTTAGAACTGTtaaggtgagaaaaaaaaatcaatcccTGACAGTACAGTTTAACGTCTTATTAGTTTTCACGACTTTTCTTTTGGGTCATTAACATATGGTTGAAATGACCCTTAATAATTTAGGTATTTCTTCTTGTCTGCGAAAAAGGCTAATGACTCGTTTTTATGGttgaaatgatgaaatatttagAGAAAGAAGGAGTCTGATTAATATCTGGCTGACAGGCAGACATGTCCTGGTGCACAGTGGGTACCTTGTGTGCCACATTGCATAACGAACCTTCCCAAATTACTCttggaaatgttttgttggaaaatattttttatctaaCTAGTTAGGCTCTATTTCAGTGTTGAGCTGGAATCTTGCAGCCTTTCACAAGGACAAAAGGAGTCAGTTTATAATAGATTTCAATGggcaatatatttaataatttgaagaGGGACGTCATGTCTTGATTTTAAAGTTACAGGAGTGTTTTTGTTCTGTCATTATTCTTAGGTAAAATTCTGAATGTTTAGTGGATGATTTATATGAGAAATGTGAGTGTGGGAAAGCCTTTCACTGTATGAGCTGAGCTGAGCTGTTGAGAGTGTGGCAACAATACGTGCCATTTATGATGTAACTAACAGTTTGCACCTGTTTTGAAAGCTTGTGGACATACATGTGGTGCAAAACTGTGAATGCCATTGTGCACTAggcagtatgaaaaaaaaaaaaacagggaatA

Function

symbol description
si:ch211-236h17.3 Predicted to enable sulfotransferase activity. Predicted to be involved in proteoglycan biosynthetic process. Predicted to act upstream of or within carbohydrate biosynthetic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human CHST13 (carbohydrate sulfotransferase 13).

NR:

description
PREDICTED: carbohydrate sulfotransferase 11-like

GO: NA

KEGG:

id description
K01017 CHST11; chondroitin 4-sulfotransferase 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224665.1 True 3143 mRNA 0.44 3 18814757 18829293

Neighbor

gene id symbol gene type direction distance location
si:ch211-225h24.2 si:ch211-225h24.2,LOC107715017,LOC107664242,LOC107707023,LOC107697952,LOC107598767,LOC107594029 coding downstream 148566 18653452 ~ 18666191 (-)
acp1 acp1,LOC107707021,LOC107715013 coding downstream 177259 18624388 ~ 18637498 (-)
ccnt1 LOC107697949,LOC107593984,LOC107707019,LOC107715012,LOC107664179 coding downstream 221903 18585124 ~ 18592854 (-)
pmelb LOC107664180,LOC107593983,LOC107715011 coding downstream 230725 18579092 ~ 18584032 (-)
LOC122328643 tuba1a,LOC108255233,LOC108275946,LOC107664173,LOC107390365 coding downstream 243919 18568172 ~ 18570838 (-)
LOC122328577 LOC107715025,LOC107671876,LOC107599375,LOC108425505,LOC106572368,LOC105022778 coding upstream 156659 18985952 ~ 19059410 (-)
G159079 NA non-coding downstream 50824 18763733 ~ 18763933 (-)
G159054 NA non-coding downstream 82941 18664402 ~ 18731816 (-)
G159063 NA non-coding downstream 134331 18679536 ~ 18680426 (-)
G159055 NA non-coding downstream 141991 18670515 ~ 18672766 (-)
G159052 NA non-coding downstream 166132 18648087 ~ 18648625 (-)
LOC122328331 NA non-coding upstream 115757 18945050 ~ 18983664 (-)
G159076 LOC107715021,LOC107664216,LOC107593990,LOC107598736,LOC107697953,LOC107707026 other downstream 60045 18747391 ~ 18754712 (-)
hoxc6a hoxc6a,LOC107593966,LOC107664205,LOC107714999,LOC107706971,LOC107697939,LOC107598897 other downstream 464410 18342334 ~ 18350347 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other downstream 512182 18296046 ~ 18302575 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other downstream 579221 18231643 ~ 18235536 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other downstream 756018 18045926 ~ 18058739 (-)

Expression


Co-expression Network