LOC122329250 (si:dkey-261h17.1)


Basic Information

Item Value
gene id LOC122329250
gene name si:dkey-261h17.1
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 10316085 ~ 10322007 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225446.1
tatttaaccCTTTCTTTGTTACCATACAGATTGTCAGGGACAGGAAGCATCAACTGGTCCGACAATAGTTATGACAACATTGCCGGAAAAAAATACGGCTACAGACCTGACAACAGCAAAGGGGGAAAAGCTGGTAACAGACCCGGCAGTAAACCTGGCAACAGATCCGGCATCCAACCTGGCAACAGATCCAGCAGCTGCAAATCCAACTCCTGTACAAGAAATTGGCATGGGACAATCAGATCCCGTTCACACTACTGACATGGCACATGGATTAGTTCCCAACGCTGCTAAGACCAGTCTGCCTACATCTGTACCAGAAGAATCAAAAAATCTGCTGACCTCTACTGAAAAGGTGTTacaagaaatacagaaaaatgtaaatCTAGGTAAAGAGAATGAAGAGAGTGATGCCTCTGGATCTTCTTCTGCAGTTTTCGTGTCTGTGCTGGTGGCTGGCTTGCTGCTTGCTGCCACCATAGTCGACATATTCTACTTGAAGCGCCATCGCCAAACTAACGGCAAAGGCATGAAACTGGCTGAGGAGTCTTATATGGCTGACGAGGAGAACCAGGGCAACACTCTAGTGTCCGTGGCCCCTCTAAACCAACCAGAGCCCCAGGAGAAGCCCAGCCTTAACGGAGAGTCACAAGAGCCAGTTAAGGCCCAAACTCCTCCTGCCGCTACCAACGGCCACTCTACCACCAAAACAGCAGACACCGAGCTGTGAACAAGCCACTCTGCCGCCAAGGGTCTGGGCAGAATGCTCAGTCCCTGCTTCTTAAACTCAGCTCAATCTACTGCATTGACCTTGGCCAAAAGGCACAAGGTAGACAAAGACTCAAATTCCCACTGCAAAATGCAACACGTTCAGTTAAGTTCATACGGAACAACTTTGGAGGTAAATTCGTCAAGTAATCCTCCTTCCGATCTATCGAGACAAATGTACAGGTTTCAGTGCTATATGAAAGATTGTTGTACGTTAAGAAAGCAGTTGTAAGTGCTAGTTATGACAGTGACGATTTATACGAagaacattatataaatacaatcaaaacatgacgcaaaaaaaaaaaaaaaaaaaaacattttagtccAAGAGTTCACCCTTTGAGTATTATACAGTACTGCTGTGGGGTGGGGGACCTTTCCCATGAGTCATTGCTGGCTTCCATAAGAGCAGCCAGGACTGGAATGGAACGCCGGGAGGATCCTTGCTCCTGTCCCACCTCTCCACAGCTTGCAGCTGAGAGTAAATCACATCACACCATAgagaaacatacatttttgtttgcaatggattgtttgtgtgtttctagACTGTATGAAATGTTCTATATGTTTATCTTTGTGTACAGTATGATTTGACTAGTTAATAGTCCTGTATAATTTTGTTAATATCACTGCATGACAAAGTAATGATTCCTGGAGTTGCTGAGCATGAGAAATCATTTCAAACAACAATCCGTCGACTCCATTTCATTGCTGCAAACAACCCTTAACGTACAGTAAAAATCCAACCAATAAGATATGATGCAAAGCCCATTAGTGCTCAGGGTGACAGCTAATTGTTATCTGACATTTCTGGATTGTGTTACAGCTTTACCATACTTTGTAAACCAGTATTACAGTATGctctttttgtaatatttttattctagaCATTTAAATGTAGTGTTTATGGGTTGAATGACTGACTTAATCGTTTGAATGACCTGCCTTAATTACTAGACGTTCCTTGGGtgggtgtgtttttattttgtatctgCATTTGCTACTACACTGTACAAAAGTCATTAGGCAAAGAAATGATGTAAGTGGGTGCAGCCATGAAACCCTGGAACATCGTTATTAGTTTTACAGTAGTCGTTCCTTtccaatacaataaaaaacagtgctgacaaatattaatatatatatatatatatatatatatatatatatatatatatatatatattctacacTATATTTAAACccatatctttttaaatgttttcacaatTCATATAATTTCTGACACAAGACTGACTAAACtccaaaagtttggagtcaAAATTTGGTGCTAGAGTCACtgtatcttttaaaatgaaccaatagaaaattgtgttttaaacgTACATACATACGAAAACCTTGTCCTTTATTTCAactatgacattttattttaacattccGGTGTTCCATCATATTTTTGGATCGCGTACTAGCATTGTGTTAAACTGATGTATGTTTGTGATAGgaataaagttttgaaaaaataaattga

Function

symbol description
si:dkey-261h17.1 Predicted to act upstream of or within cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; margin; musculature system; olfactory placode; and pharyngeal arch. Orthologous to human CD34 (CD34 molecule).

NR:

description
uncharacterized protein si:dkey-261h17.1

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225446.1 True 2269 mRNA 0.39 4 10316085 10322007

Neighbor

gene id symbol gene type direction distance location
LOC122329223 NA coding upstream 58857 10247911 ~ 10257228 (+)
taf8 taf8,LOC107723763,LOC107549030,LOC107756368,LOC107671856,LOC107594013,LOC107701755 coding upstream 72244 10240311 ~ 10243841 (+)
slc39a5 slc39a5,LOC107723731,LOC107549043,LOC107756408 coding upstream 98484 10212843 ~ 10217601 (+)
zgc:56699 zgc:56699,LOC107671838,LOC107756366,LOC107701712,LOC107549049 coding upstream 191874 10121748 ~ 10124211 (+)
cd63 LOC107723742,LOC107671882,LOC107572785,LOC107701749,LOC107756350,LOC107549048 coding upstream 199129 10108293 ~ 10116956 (+)
LOC122329277 ankrd52a,ankrd52,LOC107594018,LOC107756410,LOC107549041,LOC108432261,LOC107671831 coding downstream 46446 10368453 ~ 10381390 (+)
LOC122328600 pcmtd2,LOC107708816,LOC107570992,LOC107701717,LOC107756374,LOC107656550,LOC108433859 coding downstream 107270 10429277 ~ 10432503 (+)
LOC122329231 LOC107656551,LOC107708819,LOC107570956 coding downstream 125801 10447808 ~ 10449331 (+)
LOC122328734 sdcbp2,LOC107657068,LOC107672005 coding downstream 233269 10555276 ~ 10566657 (+)
LOC122328564 LOC107707753,LOC107672006,LOC107603149,LOC107657067,LOC107559477,LOC107747970 coding downstream 324956 10646963 ~ 10658747 (+)
LOC122328771 NA non-coding upstream 59679 10254786 ~ 10256406 (+)
G156182 grasp,LOC107671830,LOC107723769,LOC107594022,LOC107549045 non-coding upstream 152109 10161998 ~ 10163976 (+)
G156168 nr4a1,LOC107671891,LOC107723761,LOC107572787,LOC107756405,LOC107701750,LOC107549046 non-coding upstream 170624 10134855 ~ 10145461 (+)
G156142 NA non-coding upstream 321432 9994446 ~ 9994653 (+)
G156108 sgk1 non-coding upstream 392860 9922141 ~ 9923225 (+)
G156169 NA non-coding downstream 64953 10386960 ~ 10387500 (+)
G156171 NA non-coding downstream 65861 10387868 ~ 10388626 (+)
G156387 LOC107747988,LOC107671949,LOC107707743,LOC107603135 non-coding downstream 198135 10520142 ~ 10520767 (+)
G156401 NA non-coding downstream 251207 10573214 ~ 10655710 (+)
G156398 NA non-coding downstream 344854 10666861 ~ 10674148 (+)
plagx plagx,LOC107723745,LOC107572778,LOC107756402,LOC107671865,LOC107549050,LOC107701746 other upstream 226267 10070780 ~ 10089818 (+)
G156081 phip,LOC107656532,LOC107708770,LOC107549027 other upstream 546465 9683746 ~ 9769620 (+)
G155927 zgc:194189,LOC107570831,LOC107708788,LOC107681978,LOC107695725,LOC107586555,LOC107718823 other upstream 1193692 9120884 ~ 9122393 (+)
lzic lzic,LOC107708836,LOC107718820,LOC107681991,LOC107570802,LOC107695771,LOC107586557 other upstream 1214713 8941031 ~ 9101372 (+)
G155799 NA other upstream 1827444 8488086 ~ 8488641 (+)
LOC122328781 pifo other downstream 7844 10329851 ~ 10363818 (+)
LOC122328383 tbx15,tbx18,LOC107712261,LOC107708785,LOC107656541 other downstream 93656 10415663 ~ 10427162 (+)
LOC122328447 LOC107603155,LOC107707751,LOC107672009 other downstream 192972 10514979 ~ 10518751 (+)
LOC122329061 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 229090 10551097 ~ 10554720 (+)
G156399 LOC107707753,LOC107672006,LOC107603149 other downstream 241337 10563344 ~ 10572246 (+)

Expression


Co-expression Network