G16613


Basic Information

Item Value
gene id G16613
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6123077 ~ 6124878 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU18606
TTGAACACAAATAACATTACTATTCTTGGCAGCGGTACATGACACCATTGACCTATTTCAACAAGTTTCAGAAATATATGAAATGTAGATAATTTTCCATGCTTCCGAATTGAATGTCCGTGTGGTGACGTCAGAGATACTGTTTTGGGTCAGGGTCAGGGAATGGCTTTTGAATCCGACCGTCAGGCGGGATTTTTACTCGACACCCTTCATGAAGTCCAAGAACTCGTCGTAATCGATCTTGCCGTCGTTGTTCTTGTCTCCGTCCTTCATGAGTTCCTCAATGTCGTCCTCAGTGATGGCCTCACCTGTCGACTCCAGCATGTTCTTCAGCTCATCTAAATCAATGTAACCATCTCCATTCTTATCAAACATGCGGAAGACCTCAGCCAGCTCCTCTTCTGATTTTCCTTTGCTCTCCTCTTTCATACAGCGCACCATCATCACCAAGAACTCATCAAAGTCTACTGTCCCGCTTCCATCCTCATCTACTTCATCTACCATTTCCTGCAGCTCTTCTTGAGTGGGGTTCTGGCCCAGCATCCTCATCACCTTCCCCAACTCCTTAGTGCTGATGCAGCCATCCTCAGCATCCTGCACGAAGATGTCAAACGCAGCGCGAAACTCATTTTTCTGTTCTTCTGTCAAGTTCTCCACCGCTGCTTTATATACATCATCCATGGCTGTCCTGGATTAGGGGTTTTCTTTTTGAAATTGTCTGTAAACTCCTCACAGGTAATCCAGCACTGATGCCCTGTCACCCAGCACTCCTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU18606 True 774 lncRNA 0.40 6 6123077 6124878

Neighbor

gene id symbol gene type direction distance location
CI01000001_06104303_06118257 NA coding downstream 4656 6104094 ~ 6118421 (-)
CI01000001_06071846_06084571 BGN coding downstream 37896 6071671 ~ 6085181 (-)
CI01000001_06044481_06052838 B4GALT3 coding downstream 68949 6043509 ~ 6054128 (-)
CI01000001_06037150_06039894 FAM58A coding downstream 83183 6037133 ~ 6039894 (-)
CI01000001_05969709_06015943 ATP2B3B, ATP2B3, ATP2B3A coding downstream 106944 5969428 ~ 6016133 (-)
CI01000001_06126262_06133051 TKTB, TK coding upstream 898 6125776 ~ 6133051 (-)
CI01000001_06136913_06138676 LRRC23 coding upstream 11981 6136859 ~ 6138676 (-)
CI01000001_06140368_06142824 NA coding upstream 14373 6139251 ~ 6142824 (-)
CI01000001_06146900_06161111 USP19 coding upstream 21685 6146563 ~ 6161111 (-)
CI01000001_06167374_06195286 LAMB2 coding upstream 41803 6166681 ~ 6196226 (-)
G16446 NA non-coding downstream 183533 5924884 ~ 5939544 (-)
G16573 NA non-coding downstream 293421 5829347 ~ 5829656 (-)
G16556 NA non-coding downstream 403401 5719395 ~ 5719676 (-)
G16555 NA non-coding downstream 406049 5716823 ~ 5717028 (-)
G16553 NA non-coding downstream 433024 5689665 ~ 5690053 (-)
G16640 NA non-coding upstream 143104 6267982 ~ 6268417 (-)
G16650 NA non-coding upstream 144197 6269075 ~ 6270348 (-)
CI01000001_06285353_06286524 NA non-coding upstream 159314 6283778 ~ 6286524 (-)
G16656 NA non-coding upstream 163909 6288787 ~ 6288992 (-)
G16631 NA non-coding upstream 168388 6293266 ~ 6306164 (-)
G16462 NA other downstream 893492 5222777 ~ 5229585 (-)
G16332 NA other downstream 1165235 4950689 ~ 4957842 (-)
G15736 NA other downstream 1321682 4800901 ~ 4801395 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other downstream 1394870 4725927 ~ 4728210 (-)
CI01000001_04468566_04523431 DNMT3BB.1 other downstream 1644932 4468209 ~ 4523431 (-)
G16664 NA other upstream 219226 6344104 ~ 6347955 (-)
G16753 NA other upstream 459602 6583054 ~ 6615589 (-)
G17789 NA other upstream 712647 6837525 ~ 6890414 (-)
CI01000001_06932075_06937182 NA other upstream 811199 6931621 ~ 6937231 (-)
G17911 NA other upstream 1126433 7251311 ~ 7267952 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021626 tnnc1b coding NC_007134.7 CM002907.2 20110086 ~ 20112596 (+)
eurasian perch (Perca fluviatilis) G55034 LOC103362008,LOC101472191,LOC102782874,LOC105937849,LOC100703845 non-coding NC_053116.1 CM020913.1 33750289 ~ 33757122 (-)