XLOC_021626 (tnnc1b)


Basic Information

Item Value
gene id XLOC_021626
gene name tnnc1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 20110086 ~ 20112596 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042926
AGGAAAGGGGAGTGACAAAAGCCATTGTCTTTTCTAAGCCATCCATTCCAGCCATAAAGGCCAAGGCAGGTGGCCCTGGGACTCTTTGTCCTGTGTCTGCCGTGAAGAGAGGAGCGCTGGATTACCTGTGAGGAGTTTACTGACCATTTCAAAAAAGGAAAATCTAAACCCGGGACAGCCATGGATGATGTATATAAAGCAGCGGTGGAGAACTTGACAGAGGAGCAGAAGAATGAGTTCCGTGCTGCGTTCGACATCTTCGTGCAGGACGCTGAGGACGGCTGCATCAGCACTAAGGAGTTGGGGAAGGTGATGAGGATGCTGGGCCAAAACCCCACTCAAGAAGAGCTTCAGGAAATGGTAGACGAAGTAGATGAAGATGGGAGTGGGACAGTAGACTTTGATGAGTTCTTGGTCATGATGGTGCGCTGTATGAAAGAGGAGAGCAAAGGAAAATCAGAAGAAGAACTGGCTGAAGTCTTCCGCATGTTTGATAAAAATGGAGATGGTTACATTGACTTGGATGAGCTGAAGAACATGCTGGAGTCCACAGGTGAGGCCATCACTGAGGATGACATCGAGGAACTCATGAAGGACGGAGACAAAAACAACGACGGCAAGATCGACTACGACGAGTTCTTGGACTTTATGAAGGGTGTCGAGTAAAAACCCGCCAAGTGAAGCCATTTCATTCCCTGAACCAATGCTGCCTGCCTCTCTGACGTCACCACACGGACACCTAATTAGAAAGCACGGAAAATGATCTGCATTTCATTTAGTTCTGAAAGGTTGTTGAAGTGAATCAGTCTTGTCATACTGCTGCCCTAATTATTCGTGTTATTTGTGCTCAAGTAAAAACCTTTTCTGTacacaa

Function

symbol description
tnnc1b Predicted to enable actin filament binding activity; calcium ion binding activity; and calcium-dependent protein binding activity. Acts upstream of or within cardiac muscle contraction. Predicted to be part of troponin complex. Is expressed in adaxial cell; heart; musculature system; solid lens vesicle; and somite. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 1Z; hypertrophic cardiomyopathy; and hypertrophic cardiomyopathy 13. Orthologous to human TNNC1 (troponin C1, slow skeletal and cardiac type).

GO:

id name namespace
GO:0006937 regulation of muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005861 troponin complex cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040625-62 Predicted to enable actin filament binding activity; calcium ion binding activity; and calcium-dependent protein binding activity. Acts upstream of or within cardiac muscle contraction. Predicted to be part of troponin complex. Is expressed in adaxial cell; heart; musculature system; solid lens vesicle; and somite. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 1Z; hypertrophic cardiomyopathy; and hypertrophic cardiomyopathy 13. Orthologous to human TNNC1 (troponin C1, slow skeletal and cardiac type).

Ensembl:

ensembl_id ENSDARG00000037539

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042926 True 874 mRNA 0.47 6 20110086 20112596

Neighbor

gene id symbol gene type direction distance location
XLOC_021625 cfap126 coding upstream 128273 19977120 ~ 19981813 (+)
XLOC_021624 emd coding upstream 287863 19813677 ~ 19822223 (+)
XLOC_021623 flna coding upstream 301059 19759128 ~ 19809027 (+)
XLOC_021622 dnase1l1 coding upstream 398098 19701587 ~ 19711988 (+)
XLOC_021621 si:dkey-93l1.6 coding upstream 414110 19691146 ~ 19695976 (+)
XLOC_021627 AL953864.1 coding downstream 75029 20187625 ~ 20187739 (+)
XLOC_021628 NA coding downstream 232714 20345310 ~ 20361426 (+)
XLOC_021629 TNNC2 coding downstream 295631 20408227 ~ 20420243 (+)
XLOC_021630 tnnc2 coding downstream 310065 20422661 ~ 20427299 (+)
XLOC_021631 slc35c2 coding downstream 318544 20431140 ~ 20511954 (+)
XLOC_021614 NA non-coding upstream 633935 19473396 ~ 19476151 (+)
XLOC_021613 CR388168.1 non-coding upstream 891146 19217528 ~ 19218940 (+)
XLOC_021608 CR388168.2 non-coding upstream 927698 19177891 ~ 19182388 (+)
XLOC_021607 NA non-coding upstream 990643 19105546 ~ 19119443 (+)
XLOC_021606 CR788311.1 non-coding upstream 1043099 19051485 ~ 19066987 (+)
XLOC_021632 CR352228.2 non-coding downstream 359159 20471755 ~ 20471870 (+)
XLOC_021651 NA non-coding downstream 1360506 21473102 ~ 21474482 (+)
XLOC_021656 CR847529.1 non-coding downstream 1511139 21623735 ~ 21623849 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G16613 NA non-coding CI01000001 null 6123077 ~ 6124878 (-)