RNA id: TCONS_00042926


Basic Information

Item Value
RNA id TCONS_00042926
length 874
RNA type mRNA
GC content 0.47
exon number 6
gene id XLOC_021626
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 20110086 ~ 20112596 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGAAAGGGGAGTGACAAAAGCCATTGTCTTTTCTAAGCCATCCATTCCAGCCATAAAGGCCAAGGCAGGTGGCCCTGGGACTCTTTGTCCTGTGTCTGCCGTGAAGAGAGGAGCGCTGGATTACCTGTGAGGAGTTTACTGACCATTTCAAAAAAGGAAAATCTAAACCCGGGACAGCCATGGATGATGTATATAAAGCAGCGGTGGAGAACTTGACAGAGGAGCAGAAGAATGAGTTCCGTGCTGCGTTCGACATCTTCGTGCAGGACGCTGAGGACGGCTGCATCAGCACTAAGGAGTTGGGGAAGGTGATGAGGATGCTGGGCCAAAACCCCACTCAAGAAGAGCTTCAGGAAATGGTAGACGAAGTAGATGAAGATGGGAGTGGGACAGTAGACTTTGATGAGTTCTTGGTCATGATGGTGCGCTGTATGAAAGAGGAGAGCAAAGGAAAATCAGAAGAAGAACTGGCTGAAGTCTTCCGCATGTTTGATAAAAATGGAGATGGTTACATTGACTTGGATGAGCTGAAGAACATGCTGGAGTCCACAGGTGAGGCCATCACTGAGGATGACATCGAGGAACTCATGAAGGACGGAGACAAAAACAACGACGGCAAGATCGACTACGACGAGTTCTTGGACTTTATGAAGGGTGTCGAGTAAAAACCCGCCAAGTGAAGCCATTTCATTCCCTGAACCAATGCTGCCTGCCTCTCTGACGTCACCACACGGACACCTAATTAGAAAGCACGGAAAATGATCTGCATTTCATTTAGTTCTGAAAGGTTGTTGAAGTGAATCAGTCTTGTCATACTGCTGCCCTAATTATTCGTGTTATTTGTGCTCAAGTAAAAACCTTTTCTGTacacaa

Function

GO:

id name namespace
GO:0006937 regulation of muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005861 troponin complex cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040625-62 Predicted to enable actin filament binding activity; calcium ion binding activity; and calcium-dependent protein binding activity. Acts upstream of or within cardiac muscle contraction. Predicted to be part of troponin complex. Is expressed in adaxial cell; heart; musculature system; solid lens vesicle; and somite. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 1Z; hypertrophic cardiomyopathy; and hypertrophic cardiomyopathy 13. Orthologous to human TNNC1 (troponin C1, slow skeletal and cardiac type).

Ensembl:

ensembl_id ENSDART00000054664

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042925 lncRNA upstream 131349 19977329 ~ 19978737 (+) True XLOC_021625
TCONS_00042921 lncRNA upstream 293716 19813711 ~ 19816370 (+) False XLOC_021624
TCONS_00042914 lncRNA upstream 331930 19776460 ~ 19778156 (+) False XLOC_021623
TCONS_00042904 lncRNA upstream 506178 19594239 ~ 19603908 (+) False XLOC_021616
TCONS_00044813 lncRNA downstream 232714 20345310 ~ 20361426 (+) True XLOC_021628
TCONS_00042939 lncRNA downstream 400545 20513141 ~ 20516174 (+) True XLOC_021633
TCONS_00042946 lncRNA downstream 532000 20644596 ~ 20649116 (+) True XLOC_021636
TCONS_00042949 lncRNA downstream 574795 20687391 ~ 20693148 (+) False XLOC_021638
TCONS_00042950 lncRNA downstream 574863 20687459 ~ 20693145 (+) False XLOC_021638
TCONS_00042924 mRNA upstream 128273 19977120 ~ 19981813 (+) False XLOC_021625
TCONS_00042918 mRNA upstream 287863 19813677 ~ 19822223 (+) False XLOC_021624
TCONS_00042919 mRNA upstream 288543 19813694 ~ 19821543 (+) False XLOC_021624
TCONS_00042923 mRNA upstream 293594 19814371 ~ 19816492 (+) True XLOC_021624
TCONS_00042913 mRNA upstream 301059 19759128 ~ 19809027 (+) False XLOC_021623
TCONS_00042928 mRNA downstream 295631 20408227 ~ 20420243 (+) True XLOC_021629
TCONS_00042929 mRNA downstream 310065 20422661 ~ 20426722 (+) False XLOC_021630
TCONS_00042930 mRNA downstream 310065 20422661 ~ 20427299 (+) True XLOC_021630
TCONS_00042931 mRNA downstream 318544 20431140 ~ 20446495 (+) False XLOC_021631
TCONS_00042932 mRNA downstream 318792 20431388 ~ 20511954 (+) False XLOC_021631
TCONS_00042920 other upstream 288349 19813705 ~ 19821737 (+) False XLOC_021624
TCONS_00042922 other upstream 288623 19813719 ~ 19821463 (+) False XLOC_021624
TCONS_00042917 other upstream 301835 19801136 ~ 19808251 (+) True XLOC_021623
TCONS_00042916 other upstream 311047 19795438 ~ 19799039 (+) False XLOC_021623
TCONS_00042898 other upstream 532840 19560074 ~ 19577246 (+) False XLOC_021615
TCONS_00042927 other downstream 75029 20187625 ~ 20187739 (+) True XLOC_021627
TCONS_00042936 other downstream 336309 20448905 ~ 20470595 (+) True XLOC_021631
TCONS_00042937 other downstream 359159 20471755 ~ 20471870 (+) True XLOC_021632
TCONS_00042958 other downstream 954793 21067389 ~ 21114732 (+) False XLOC_021644
TCONS_00042986 other downstream 1511139 21623735 ~ 21623849 (+) True XLOC_021656

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU18606 True 774 lncRNA 0.40 6 CI01000001 6123077 ~ 6124878 (-)