RNA id: TCONS_00042946


Basic Information

Item Value
RNA id TCONS_00042946
length 810
lncRNA type retained_intron
GC content 0.48
exon number 3
gene id XLOC_021636
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 20640484 ~ 20664621 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGACTGAACGACAGTGACTCGGCAGGATAGTGAAGGGGGCTTTCTCACAGCATCTCGCCCAGCGCTGTTCGTGCTGTTGCTGTTCGTTTTCTCCTCGCATCTTCACCCACCCGCAATCCGCACCATCCAAGTTAGTTTCACACGAGGAGCGGTTTGCTGACACTGAGAGTGGACTGAGAAGGATTATTGATGTCCAGCTCGCCGCTGTCCAAGAAGCGTCGCGTGTCAGGATCAGAGACGAAGACGGGATCCCATTGCTCCTCCTCTAACTCTGTCAGAACTGAACTGTCACACACACCAGCTAACGTATGTTCAAGTCAATACTTGTTTTGAACACCACTGGGGCTTGAACATATTTAGAGAATTTTATCTTCATTCTTTACTGCGCTTGTGTTTTTTGAAAGGCAGCCAGTTTCATAAGTTATGTGCATGGCTATTTATAGTCTGCTAACTGTGGTTTTGGTCTCTGCAGGGCATGGCTAAGAATGGAAATGATGCTGAGATCGACGAGGGCCTGTACTCCAGACAGCTGTACGTGCTGGGTCATGATGCTATGAAGCGTATGCAGAGCTCTAATGTTCTTATCTCGGGACTGCGAGGTTTAGGGGTAGAGATCGCTAAGAATGTCATTCTGGGTGGAGTCAAAAGCGTCACCCTGCACGATCAGGGAGTGGCCGAGTGGAAGGACCTTTCATCACAGGTCAGTGGTTGGTCATGAGTCATAACTGTAACTGTGTGAAAGCAAAACAGCCCTTGCTGATAGTTTTGTGCGTTGAGTAAGGGGCTAAAattacgtttaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006464 cellular protein modification process biological_process
GO:0016567 protein ubiquitination biological_process
GO:0032446 protein modification by small protein conjugation biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0007409 axonogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004839 ubiquitin activating enzyme activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016874 ligase activity molecular_function
GO:0008641 ubiquitin-like modifier activating enzyme activity molecular_function

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko05012 Parkinson disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko04121 Ubiquitin system
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-040426-2009 Predicted to enable ubiquitin activating enzyme activity. Acts upstream of or within axonogenesis. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in VEXAS syndrome and X-linked spinal muscular atrophy 2. Orthologous to human UBA1 (ubiquitin like modifier activating enzyme 1).

Ensembl:

ensembl_id ENSDART00000136021

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042939 lncRNA upstream 128422 20513141 ~ 20516174 (+) True XLOC_021633
TCONS_00044813 lncRNA upstream 283170 20345310 ~ 20361426 (+) True XLOC_021628
TCONS_00042925 lncRNA upstream 665859 19977329 ~ 19978737 (+) True XLOC_021625
TCONS_00042921 lncRNA upstream 828226 19813711 ~ 19816370 (+) False XLOC_021624
TCONS_00042914 lncRNA upstream 866440 19776460 ~ 19778156 (+) False XLOC_021623
TCONS_00042949 lncRNA downstream 38275 20687391 ~ 20693148 (+) False XLOC_021638
TCONS_00042950 lncRNA downstream 38343 20687459 ~ 20693145 (+) False XLOC_021638
TCONS_00042963 lncRNA downstream 612274 21261390 ~ 21277522 (+) True XLOC_021646
TCONS_00042966 lncRNA downstream 714958 21364074 ~ 21367221 (+) False XLOC_021647
TCONS_00042967 lncRNA downstream 722120 21371236 ~ 21373932 (+) True XLOC_021647
TCONS_00042942 mRNA upstream 7856 20563779 ~ 20636740 (+) True XLOC_021635
TCONS_00042941 mRNA upstream 114540 20523617 ~ 20530056 (+) True XLOC_021634
TCONS_00042940 mRNA upstream 116880 20518504 ~ 20527716 (+) False XLOC_021634
TCONS_00042938 mRNA upstream 126904 20513104 ~ 20517692 (+) False XLOC_021633
TCONS_00042932 mRNA upstream 132642 20431388 ~ 20511954 (+) False XLOC_021631
TCONS_00042947 mRNA downstream 20033 20669149 ~ 20684086 (+) True XLOC_021637
TCONS_00042948 mRNA downstream 38224 20687340 ~ 20701863 (+) False XLOC_021638
TCONS_00042951 mRNA downstream 40139 20689255 ~ 20701300 (+) True XLOC_021638
TCONS_00042952 mRNA downstream 56733 20705849 ~ 20730155 (+) True XLOC_021639
TCONS_00042953 mRNA downstream 122783 20771899 ~ 20780671 (+) True XLOC_021640
TCONS_00042937 other upstream 172726 20471755 ~ 20471870 (+) True XLOC_021632
TCONS_00042936 other upstream 174001 20448905 ~ 20470595 (+) True XLOC_021631
TCONS_00042927 other upstream 456857 20187625 ~ 20187739 (+) True XLOC_021627
TCONS_00042920 other upstream 822859 19813705 ~ 19821737 (+) False XLOC_021624
TCONS_00042958 other downstream 418273 21067389 ~ 21114732 (+) False XLOC_021644
TCONS_00042986 other downstream 974619 21623735 ~ 21623849 (+) True XLOC_021656
TCONS_00043003 other downstream 1941942 22591058 ~ 22591155 (+) True XLOC_021666
TCONS_00043017 other downstream 2371593 23020709 ~ 23049140 (+) False XLOC_021673
TCONS_00043030 other downstream 3422913 24072029 ~ 24072110 (+) True XLOC_021680

Expression Profile

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