RNA id: TCONS_00042942


Basic Information

Item Value
RNA id TCONS_00042942
length 2695
RNA type mRNA
GC content 0.48
exon number 11
gene id XLOC_021635
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 20563779 ~ 20636740 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATGAAAGCAGAGATTATTTATTTCtctgggggagagagagagaaggagggaGGGACAGACAGCAGCATTGCTCGCCGATAGTCTTGTCAGAAACTGCGCCGATCTAATGCGTCTCTCATAAACGCGCCATTAACAGTCGACCAAGGGCTCGCCGTCTTCAAAGTTTGGATTTCCTCATCCATCCCGTGCGTACTCTGTGCCAATCCGAGCAGGTGGATGCTGTCATGCCATTTGGGTGCCTTGCTCTGCGAGATGGGCGAACATACAACAGCCTGTCAGACATCACTGACAAATACGAGATCGGACAGGTCCTCAAGGCGAAAGAATTTTGTGAGCTGTGCCTGGTGAAGGAGCGACAGACGGACAAGGTTTATGTGTGCAAGAAATTCCTCAAGAAGGATGGCAGGAAAGTGCGGAAGGCAGCCAAGAACGAGATCATGATCTTGAAAATGGTCAAACATCCAAACATCTTGCAGCTGATTGATGCATTCGAGACCAGAAAAGAGTTCTTCATCATACAAGAGCTGGCCACAGGTGGAGATGTGTTTGACTGGATCTTAGACCAGGGTAACTACACAGAGAGAGATGCGGCCAATGTGATCCGACAGGTCCTAGAAGCTGTGGCGTACCTTCACTCCCTCAATATAGTCCACAGGAATTTAAAGCTGGAGAATTTGATGTACTACAGAGAAAGTAACCACAACAAAGTTGTGTTGCGGGATTTCTACCTGTCCAGGTTTGAGAACGGTTCGATCACCGAACCCTGTGGTACACCGGAGTATCTAGCCCCTGAAGTGGTGGCACGTCATCGCTATGGAAGACCAGTTGATTGTTGGGCAGTGGGGGTCATTATGTACATACTGTTGTCTGGAAACCCTCCATTTTATGATGAAACTGAGGAGGAAAACACTGACATGCACAACCGGATCATCTTCTGCCGCATTGTTGGTGGAGAGTTTGAGTTTGACTCGCCATACTGGGACGACATTTCTCCTGCTGCGAAAGAACTAGTCTGCAGATTTATGGAGGTCGACCAAATGCTGAGAATTACAGCACAAGATGCACTTACACATGAATGGATTGCTGGAAATGGTGCATCAGAAAAGAATTTGAAGGAAGGAGTTTGTGCTCAGTTTGAGAAAAACTTTGCAAAGGCCAAATGGAGGAAAGCAATTCGTGTCACCACATTTATGCAGCGTCTCCGAGCCACTGATATAGGATCGTCCGATGGGGCAGTGGAAGGCCAGGCCGAAGGGGTCAAAGCGGATGGATTAGATGGTAAGGGGATACAAACAGACTCAGGTGGCGTTTCTGCTGGGAGTGTGTCCCATGAGGTGTCTGTCGAAAGCAGACCCACAGAGAATCAAGAAGCAGGACAAACAAAAGTAGAAGAGAAAGAAACAGAGACTGTTGGCCAATCGAACAGCTCTTTGAAAATACAAGCAGAGGAGCCACTGAACAAGAAAGAAACTACAGAAGGCACTTCTGAAATAAAGGACAAACCAACAACAGGCGCAAACCAGAAAGCAGCATCCGTTCAGCCTATCAAAACTTCAGACAGCCGTGAGAACAGCATCCCTGTGGAGCCAGAAGCTACAACTCTTGGCAGTGTTGAGAAGAAATCACCTTTCCATGATACTCCAAATCGACGCAAGATTGCTGCCAATCTCTCAATGGATCATAGTTCATGTTCTGAAGCCAAAACTGCTACCCTATCAACAGGAAATGAACCCCCTCTTCAATCAGAAGACAAGAAAGACACAGTCCACGATATGACCGCAAGTAGCTGGTGTCAAACACAACTCCCAGAAGCAGTTGCAGAGAGGTCAGCAGAAGTTGGGGCACCTTCTGAGGTCAATCCCAAGAGCAAAGAGTTGAAGAAGGGTCGAGCAGACAAGGGTAGCCAATCGGTGAAAAACATCCAGTCAGTTTATGCAGGATTGGGATCTTCAAGTCTTGGCCAAGATCAAACTGTATTCGTGCAGGAGCTGCAGGAGATGGTCCATGGTGCATCGGGATATGGGAGTCCGTACTGTCCAACCTACTCTGTCGGGCAGTATGGAGGTCTCGATCCAGGAAGTGCAGCCAGTGCAGACTGGCAAATGGATTGCGTAATTGAACAAATTGAGAAGCAAATGGCTGCTGTGCTAGAGAAGATTGAGGGGGACATGCCTTCATTGCTGGAGCAGATCAGTGACCATCCTGAGACCCTACCAAGAGCAAAGAGTGCCAGCTCTTCCCCTTCACCTCGCCCTCGCTCATACCATCATTCGACCCCACCTCCCCTTCCCACCACCCCTCGCCCAGTAATGCCTTCTTTACCCCACCTGACCATTCCGCCCCCTTCATACCCACCACCTTCCCCACCCAGTCAAATCCAAGGTCACAGCCATCCAGCTCCCGAAGAGAGTACCAGTGATGGCCAGAAGTCTACAAAGCGGTCTGGCCAGTCACCAAGGGGAAGTGTGTCAGGAAAAGGGTTGTAAATATGCTAACAGGATGTGAACAGTCAAGAATAATGAAGGTACACTTTGTAACTGAATCTTTGGGATGTGGATTATGGATCCATTAGTACAGTATTCCTTTATGGGCTGTTCAAGTGGGCTCAAACATAAAAGAGCCTCGTTATTGATTGTATGTGATGGATAAGaagcttgtttttaaaatgtaaagaggTAAGTATCTAAGCTAGTT

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004683 calmodulin-dependent protein kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090311-58 Predicted to enable calmodulin binding activity and calmodulin-dependent protein kinase activity. Predicted to be involved in peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Is expressed in Purkinje cell.

Ensembl:

ensembl_id ENSDART00000146008

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042939 lncRNA upstream 47605 20513141 ~ 20516174 (+) True XLOC_021633
TCONS_00044813 lncRNA upstream 202353 20345310 ~ 20361426 (+) True XLOC_021628
TCONS_00042925 lncRNA upstream 585042 19977329 ~ 19978737 (+) True XLOC_021625
TCONS_00042921 lncRNA upstream 747409 19813711 ~ 19816370 (+) False XLOC_021624
TCONS_00042914 lncRNA upstream 785623 19776460 ~ 19778156 (+) False XLOC_021623
TCONS_00042946 lncRNA downstream 7856 20644596 ~ 20649116 (+) True XLOC_021636
TCONS_00042949 lncRNA downstream 50651 20687391 ~ 20693148 (+) False XLOC_021638
TCONS_00042950 lncRNA downstream 50719 20687459 ~ 20693145 (+) False XLOC_021638
TCONS_00042963 lncRNA downstream 624650 21261390 ~ 21277522 (+) True XLOC_021646
TCONS_00042966 lncRNA downstream 727334 21364074 ~ 21367221 (+) False XLOC_021647
TCONS_00042941 mRNA upstream 33723 20523617 ~ 20530056 (+) True XLOC_021634
TCONS_00042940 mRNA upstream 36063 20518504 ~ 20527716 (+) False XLOC_021634
TCONS_00042938 mRNA upstream 46087 20513104 ~ 20517692 (+) False XLOC_021633
TCONS_00042932 mRNA upstream 51825 20431388 ~ 20511954 (+) False XLOC_021631
TCONS_00042943 mRNA downstream 3744 20640484 ~ 20664621 (+) False XLOC_021636
TCONS_00042944 mRNA downstream 4135 20640875 ~ 20648942 (+) False XLOC_021636
TCONS_00042945 mRNA downstream 7771 20644511 ~ 20650839 (+) False XLOC_021636
TCONS_00042947 mRNA downstream 32409 20669149 ~ 20684086 (+) True XLOC_021637
TCONS_00042948 mRNA downstream 50600 20687340 ~ 20701863 (+) False XLOC_021638
TCONS_00042937 other upstream 91909 20471755 ~ 20471870 (+) True XLOC_021632
TCONS_00042936 other upstream 93184 20448905 ~ 20470595 (+) True XLOC_021631
TCONS_00042927 other upstream 376040 20187625 ~ 20187739 (+) True XLOC_021627
TCONS_00042920 other upstream 742042 19813705 ~ 19821737 (+) False XLOC_021624
TCONS_00042958 other downstream 430649 21067389 ~ 21114732 (+) False XLOC_021644
TCONS_00042986 other downstream 986995 21623735 ~ 21623849 (+) True XLOC_021656
TCONS_00043003 other downstream 1954318 22591058 ~ 22591155 (+) True XLOC_021666
TCONS_00043017 other downstream 2383969 23020709 ~ 23049140 (+) False XLOC_021673
TCONS_00043030 other downstream 3435289 24072029 ~ 24072110 (+) True XLOC_021680

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU18717 True 2539 lncRNA 0.43 2 CI01000001 6424442 ~ 6431183 (-)
bowfin (Amia calva) TU18717 False 757 TUCP 0.53 3 CM030122.1 27588479 ~ 27598648 (+)