XLOC_021673 (samd11)


Basic Information

Item Value
gene id XLOC_021673
gene name samd11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 23020709 ~ 23123901 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043017
GGAGACCCGTCATGCGAGCAGAGCACTGAGGAGAAGAGTGAAGTGGTGAATGGCTGAACTTAAGCGCTCTGCTGTCAGGCAGCGACGCGGGAGTCGTGCGTAAACACACCGGTGCGCCTGGAACTCCGCGAACAGGGACACAAGTTGGGACGCATGAACTGCTAATCACTCGTTGCCGGCGCTCCGCTTCGGGTAACATGCCTGCCATCAAAAAGGAGAGACTGGATGGAGAAGACATGGCATTAGCCGCCTTCAACCAGCCTGAATACCTGGCCCCTTTAAATGCCACCGCTATCCCCGTGGTGACCCCTCATCCGCCGCCGTACGATCACATTTTCGCCCATCACCAGCGCGCGTACTTGGGCTTTCGCGACACCGCGCTGCATCAGCAGCACCTTCACCACCACCCGGACGACTTCATGCTGGAGAGCTTCTCGTCTATCCCGGACTTTCAGCCGTTTTTCGACAACGGGGAGCCTTGTATCGAAGTGGAATGCGGGGAAAACAAAGCACTACTGTACATTAACAAACTGTGCCAGGGCAGCAAAGGGCCCTCCATCAAATACCGGACTGAGTGGCTCACCCCAAACGAGTTCCAGTTTGTCAGTGGAAGAGAGACAGCCAAAGACTGGAAACGCAGTATCAGGCACAAGGGTAAGTCAGTTGCCGGGTGCACACGCATGGATGTTACTTTTGAAACGGGGGTTAATTGAGCTTTAGTCCTCTTCTTGGGTTAACAGAAGAGCTTTTTTCTGGATAGAAATGTGGGTTACTCAACTGCTGTAACTTTAGTGCGTTGGGAACTAGAGCTCATTCTGCTTGGAGTCGAACGACTTTGGATTCTCACTGCTGGAACAAAAAGggaAAAGTCTGAAGACACTTATGTCCAAAGGAATCTTACAAGTACATCCGCCTATCTGTGACTGTCCCGGCTGTAGAATTTCATCTCCTGTGAACCGTGGGCGACTGGCAGAGAAACGCACCATCCCTTTGCCGCCAACACGGGTGCCCAAAAAGGAGCTGGCCTCCGTTTTCAGCAGTGACGACAGTGAGG
>TCONS_00043018
GGAGACCCGTCATGCGAGCAGAGCACTGAGGAGAAGAGTGAAGTGGTGAATGGCTGAACTTAAGCGCTCTGCTGTCAGGCAGCGACGCGGGAGTCGTGCGTAAACACACCGGTGCGCCTGGAACTCCGCGAACAGGGACACAAGTTGGGACGCATGAACTGCTAATCACTCGTTGCCGGCGCTCCGCTTCGGGTAACATGCCTGCCATCAAAAAGGAGAGACTGGATGGAGAAGACATGGCATTAGCCGCCTTCAACCAGCCTGAATACCTGGCCCCTTTAAATGCCACCGCTATCCCCGTGGTGACCCCTCATCCGCCGCCGTACGATCACATTTTCGCCCATCACCAGCGCGCGTACTTGGGCTTTCGCGACACCGCGCTGCATCAGCAGCACCTTCACCACCACCCGGACGACTTCATGCTGGAGAGCTTCTCGTCTATCCCGGACTTTCAGCCGTTTTTCGACAACGGGGAGCCTTGTATCGAAGTGGAATGCGGGGAAAACAAAGCACTACTGTACATTAACAAACTGTGCCAGGGCAGCAAAGGGCCCTCCATCAAATACCGGACTGAGTGGCTCACCCCAAACGAGTTCCAGTTTGTCAGTGGAAGAGAGACAGCCAAAGACTGGAAACGCAGTATCAGGCACAAGGggaAAAGTCTGAAGACACTTATGTCCAAAGGAATCTTACAAGTACATCCGCCTATCTGTGACTGTCCCGGCTGTAGAATTTCATCTCCTGTGAACCGTGGGCGACTGGCAGAGAAACGCACCATCCCTTTGCCGCCAACACGGGTGCCCAAAAAGGAGCTGGCCTCCGTTTTCAGCAGTGACGACAGTGAGGGCAGCGAACGGGCCAGCGGAGATCATGCAGACATCAAACAGGAAGAGCTGAATTTCACTATCATGAGAAAAAGTCGTGATAGTGATCTTTCAACGATCATCTCCAATCTGCACCACACCCGACAGCACGGCATGCCAGAGGGCCAGTCCTGCTCCGACCTCAGCCTCGCCTCCGCACACACAGatGACATTCTAGGCAAGAGGAGAGCCTACTCCCCCAACAGCAGCAGCGAGTGCCCATCTGACAGCAAGAAGTCCCGCAGCGTGTCACCTAAAGAAAACTCTCACACGCCTGCGCTGGAGCCGGGCAGTCACATGACCCCCGAGGAGCACTACAGGCGCATGATGTCAGCGCTGAACGAGCATGGCTCTTATGAGGAGCAGCAGCAGCGCCTCTACCAGCTGGCCAACAACATGGGCATCCCAAGCCATGAGCTGCTACATGTACGTCAGGAAGCCATGGTTGCTGTTAGAAATCCAGGAGGAATGGAAGCCCACGTCCCCTCTGCAGGCAGCTCCTCCAGCCAGCGGCGCAAACAGGGCCTGCCCCAGCACAGAGACGCACACTTCCCTGAGCGAGATATATCGCACCCTCCACCATTGCTGTCCCCACAGAATGCTCCTCATATTGCTCTGGGGCCTCACCTGCGTCCCCCGTTCCTGGGCATGCCTTCTGCCCTCTGCCAAGCCCCAGGTTATGGTTTTTTGCAGCCTGCTCAGGCGGAGATGTTCGCCCGTCAACAGGAGATTCTTCGTAAACAGAACCTTGCAAGGTTGGAAATGTCTGCTGAGTTGTTGAGACAGAAGGAGTTAGAGAACCTCCACAGGCAGCGACTGCTGGCGGACCCATTGGGCCTGCATCCCGGGCTCCCTGCAGAACACCCTGCCTTACGCAGCCTGCAAGAAATCCCAGAAGGCCACCCGCTCCGAGAGGAGCTCAATCGCCGCAATGCCATGCTGGTTTTGCGGCACAACAACACCCCATTACTCTCCCTCAACCACCAGGGGGCAGCAGCAGGCACTTCCTCTAAAGACCTTAGCAACAGGAAGAGCTTGAGGAAAGGAGGACCACTCCAAGGGGACCAACAGGGGGGTTCATCTGAAACAAAAGAGATGCTCAGAGAGGGCTGCGTGCGAGATGTAGAAACAGAGGGAATGGATGAAGACATGAAAGACTCTGAGAATGATGCAGAGGTTGGGGAAGACAGGCCGGAAAGGCTTTCCAAAGGGGACGGACATGGTCTCAGTTCAGAGGTGTGCCAAGGAAAGGACGTAACCAAGACTAGTGAAGCAATAAAAGAGCTAGGGGAAGGGTCAGGAAGGCTCAGTGTACCTTGTAGCTCCACAGGCCAAGAGTCACCAACTCACCACCTTTTCACATCAGGACTTGGCAAGAATGAGGCTAAATACCTGCCACCAGGAATCCCACCCTTACCCACTTTGCCTGGACAAATGCTGCCCTTCACTTTTCCGTACTCCAGTCCTTACTTTCACACTGGCGCCATGGGAGGTCTTTTCGTGGACGGAGAAGAGGCAGGAGCAGCCGAGGACATCAGCAAGTGGAGTGTGGAGGAGGTGTGCAGCTTCATCAGCAGCCTAGCAGGCTGTGGGGAGTACACACAGGTCTTCAGAGAGCAGGCCATTGATGGTGAGACTCTGCCACTGCTGACAGAAGACCACTTGCTTAACAACATGGGATTAAAACTGGGGCCTGCCCTCAAGATCCGTTCTCAgGTGGCGCGACGTATTGGCAGAATATTCTACATGACCAGCTTCCCGCTGGCCCTCCCGCTGCCACCATCTGCTCTGCGCCCTACAGACAGAGACCCCCTGCCCACTGAGACCCGCCCTCCTTCTACCAGCAGCACTTCCTCCCCATTCAGTGTGCCCCCTCCCGCCTGCCGCACCTCCCCTAAACAGGAGAACGGAAACCCCTCCTCAGCGGGAGCCTACGACTCCACTAAACCTCCCTCGTAGAATTGGCCATTAAAACTTTTGACTGCTTCTCCATATGGCAGAGGCAGCGCTTCAGGAAGGAGGTAAAGATGGAGAGAGGGCATGAAGGGGGCCCTCTTTGAACTATTCTTTCCTTCCTCTTACCCCCACTACCCTCCTCCCGAAATAAAAAGCAAACTTGAGGACCTTCATGCAGAGGCACTTAATCTTTTTTAGGAAAAGTGTGGAGAAATGTGCAGAAAGACGAGAGACACTGATGAAACGACTCTGGCTTAAACAGCTCCACCCTGTGCAGTGGTTGCGAGGATGCCAAAATCCAAAGATGTGCAAATAGGGACTCGGGGTTGAGACAGGAAGCGTTAAGAGTGTGTGAGAGATGAACGTGAGCCGACAGCTGCTCCTAAACAGCATGCTTGAAGGAAGAGAGTCATATTCAGTGAGGACACAAGGTACACATACAAGATTCTCTTGTGTCAGACATTGCAGGAAAGCACCATTCGCTGAGATATACTCTCGTGGTACCCAACATTCTCGGGGAACGGTGAACTTTGAGAGAGACTGTCTTTTCTGCTTTCATGCCACCACCTTCGCCAACTTCCAGCGGTTCCAGTTGGTTTAGCTTTGAAAGACTAAATCCTCCAAAGAGGAATACATACAATCTTGACTAGTGCAACTATGCATTCCACAGTCCAAAACcaaagatggatggatgtggAATATTCAAACGAGATCTAGCATTGATCTCACCAGTGACGAAACAAGGTACATATACAGGGCCATACTGAAGGAAGTGGGATGGGGAAAAGGAGACATTTAAAGCACTTAGACTTCCTGCGACCAAAAGCCATCAGCCAAAGCAATGGCCCTATCTCTCACCCAACAAACATCTGGGCCCGTTTTAGTTTTACAACCCCAGAAAAAAAGAGCATTAGGGTAGAACGTACATCCCTCTCAATGCCAGTCTGTAGATGGATTAATGCCACTGTGAGGTCACATTTACTGCTGTGGGAAAGACATATTATCCTGAATTGTACAGAAACATGCTCAAGATAAGAATATACTGAAGATGAAATAAGTGGTACGTTTTGTTAAATGTAGTTGCACGAGTTAAAAATCTTTATTACTGAACAAAATGTGACTGACTGGCTTGGTGGTACTTTTTGTTCCTATTTTTTTGCTGTGTATTCCACTTGTAATAATCATGAGCCCCAAACTTAAATGCCACTTCAGCATATAAatgagaaaaaatatttataggaattTGTTTGCTGTAGTTAGAGCTACAAAATATTCAATTGTCCTCAAATTGATCCCAAAGAACGATACTTTTCTCTTTGTTGCAGGGAAATGGAAGGCACAAAGCTCTTTATGCAAATTTTTGAAATGGTTTTTCCTTTTAAACATGTAagcaattaattaaaattgtCTCTAGATTTCCCATCAATGTTTTGTCTTCATCCTATTTTTCTATTCTCCGCTGGGTGAAATAAATCCTATTGAAAACTTA
>TCONS_00043019
ATGTCCAAAGGAATCTTACAAGTACATCCGCCTATCTGTGACTGTCCCGGCTGTAGAATTTCATCTCCTGTGAACCGTGGGCGACTGGCAGAGAAACGCACCATCCCTTTGCCGCCAACACGGGTGCCCAAAAAGGAGCTGGCCTCCGTTTTCAGCAGTGACGACAGTGAGGGCAGCGAACGGGCCAGCGGAGATCATGCAGACATCAAACAGGAAGAGCTGAATTTCACTATCATGAGAAAAAGTCGTGATAGTGATCTTTCAACGATCATCTCCAATCTGCACCACACCCGACAGCACGGCATGCCAGAGGGCCAGTCCTGCTCCGACCTCAatGACATTCTAGGCAAGAGGAGAGCCTACTCCCCCAACAGCAGCAGCGAGTGCCCATCTGACAGCAAGAAGTCCCGCAGCGTGTCACCTAAAGAAAACTCTCACACGCCTGCGCTGGAGCCGGGCAGTCACATGACCCCCGAGGAGCACTACAGGCGCATGATGTCAGCGCTGAACGAGCATGGCTCTTATGAGGAGCAGCAGCAGCGCCTCTACCAGCTGGCCAACAACATGGGCATCCCAAGCCATGGTGAGTGTCTGCTACATGTACGTCAGGAAGCCATGGTTGCTGTTAGAAATCCAGGAGGAATGGAAGCCCACGTCCCCTCTGCAGGCAGCTCCTCCAGCCAGCGGCGCAAACAGGGCCTGCCCCAGCACAGAGACGCACACTTCCCTGAAGATATATCGCACCCTCCACCATTGCTGTCCCCACAGAATGCTCCTCATATTGCTCTGGGGCCTCACCTGCGTCCCCCGTTCCTGGGCATGCCTTCTGCCCTCTGCCAAGCCCCAGGTTATGGTTTTTTGCAGCCTGCTCAGGCGGAGATGTTCGCCCGTCAACAGGAGATTCTTCGTAAACAGAACCTTGCAAGGTTGGAAATGTCTGCTGAGTTGTTGAGACAGAAGGAGTTAGAGAACCTCCACAGGCAGCGACTGCTGGCGGACCCATTGGGCCTGCATCCCGGGCTCCCTGCAGAACACCCTGCCTTACGCAGCCTGCAAGAAATCCCAGAAGGCCACCCGCTCCGAGAGGAGCTCAATCGCCGCAATGCCATGCTGGTTTTGCGGCACAACAACACCCCATTACTCTCCCTCAACCACCAGGGGGCAGCAGCAGGCACTTCCTCTAAAGACCTTAGCAACAGGAAGAGCTTGAGGAAAGGAGGACCACTCCAAGGGGACCAACAGGGGGGTTCATCTGAAACAAAAGAGATGCTCAGAGAGGGCTGCGTGCGAGATGTAGAAACAGAGGGAATGGATGAAGACATGAAAGACTCTGAGAATGATGCAGAGGTTGGGGAAGACAGGCCGGAAAGGCTTTCCAAAGGGGACGGACATGGTCTCAGTTCAGAGGTGTGCCAAGGAAAGGACGTAACCAAGACTAGTGAAGCAATAAAAGAGCTAGGGGAAGGGTCAGGAAGGCTCAGTGTACCTTGTAGCTCCACAGGCCAAGAGTCACCAACTCACCACCTTTTCACATCAGGACTTGGCAAGAATGAGGCTAAATACCTGCCACCAGGAATCCCACCCTTACCCACTTTGCCTGGACAAATGCTGCCCTTCACTTTTCCGTACTCCAGTCCTTACTTTCACACTGGCGCCATGGGAGGTCTTTTCGTGGACGGAGAAGAGGCAGGAGCAGCCGAGGACATCAGCAAGTGGAGTGTGGAGGAGGTGTGCAGCTTCATCAGCAGCCTAGCAGGCTGTGGGGAGTACACACAGGTCTTCAGAGAGCAGGCCATTGATGGTGAGACTCTGCCACTGCTGACAGAAGACCACTTGCTTAACAACATGGGATTAAAACTGGGGCCTGCCCTCAAGATCCGTTCTCAgGTGGCGCGACGTATTGGCAGAATATTCTACATGACCAGCTTCCCGCTGGCCCTCCCGCTGCCACCATCTGCTCTGCGCCCTACAGACAGAGACCCCCTGCCCACTGAGACCCGCCCTCCTTCTACCAGCAGCACTTCCTCCCCATTCAGTGTGCCCCCTCCCGCCTGCCGCACCTCCCCTAAACAGGAGAACGGAAACCCCTCCTCAGCGGGAGCCTACGACTCCACTAAACCTCCCTCGTAG
>TCONS_00043020
CCACCCTTACCCACTTTGCCTGGACAAATGCTGCCCTTCACTTTTCCGTACTCCAGTCCTTACTTTCACACTGGCGCCATGGGAGGTCTTTTCGTGGACGGAGAAGAGGCAGGAGCAGCCGAGGACATCAGCAAGTGGAGTGTGGAGGAGGTCTTCAGAGAGCAGGCCATTGATGGTGAGACTCTGCCACTGCTGACAGAAGACCACTTGCTTAACAACATGGGATTAAAACTGGGGCCTGCCCTCAAGATCCGTTCTCAgGTGGCGCGACGTATTGGCAGAATATTCTACATGACCAGCTTCCCGCTGGCCCTCCCGCTGCCACCATCTGCTCTGCGCCCTACAGACAGAGACCCCCTGCCCACTGAGACCCGCCCTCCTTCTACCAGCAGCACTTCCTCCCCATTCAGTGTGCCCCCTCCCGCCTGCCGCACCTCCCCTAAACAGGAGAACGGAAACCCCTCCTCAGCGGGAGCCTACGACTCCACTAAACCTCCCTCGTAGAATTGGCCATTAAAACTTTTGACTGCTTCTCCATATGGCAGAGGCAGCGCTTCAGGAAGGAGGTAAAGATGGAGAGAGGGCATGAAGGGGGCCCTCTTTGAACTATTCTTTCCTTCCTCTTACCCCCACTACCCTCCTCCCGAAATAAAAAGCAAACTTGAGGACCTTCATGCAGAGGCACTTAATCTTTTTTAGGAAAAGTGTGGAGAAATGTGCAGAAAGACGAGAGACACTGATGAAACGACTCTGGCTTAAACAGCTCCACCCTGTGCAGTGGTTGCGAGGATGCCAAAATCCAAAGATGTGCAAATAGGGACTCGGGGTTGAGACAGGAAGCGTTAAGA

Function

symbol description
samd11 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human SAMD11 (sterile alpha motif domain containing 11).

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060428-2 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human SAMD11 (sterile alpha motif domain containing 11).

Ensembl:

ensembl_id ENSDARG00000077852

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043017 False 1054 nonsense_mediated_decay 0.53 3 23020709 23049140
TCONS_00043018 False 4308 mRNA 0.51 13 23020709 23123901
TCONS_00043019 False 2130 mRNA 0.56 12 23022790 23122415
TCONS_00043020 True 848 mRNA 0.54 4 23119008 23122759

Neighbor

gene id symbol gene type direction distance location
XLOC_021672 AL928977.1 coding upstream 4408 22953379 ~ 23016301 (+)
XLOC_021671 NA coding upstream 79480 22940532 ~ 22941229 (+)
XLOC_021670 rerea coding upstream 94214 22785375 ~ 22926495 (+)
XLOC_021669 eno1a coding upstream 341827 22656477 ~ 22678882 (+)
XLOC_021668 slc2a5 coding upstream 387573 22616063 ~ 22633136 (+)
XLOC_021674 klhl17 coding downstream 58136 23182037 ~ 23214599 (+)
XLOC_021675 plekhn1 coding downstream 108235 23232136 ~ 23252668 (+)
XLOC_021676 agrn coding downstream 361957 23485858 ~ 23914687 (+)
XLOC_021677 ptpn11b coding downstream 794520 23918421 ~ 23995856 (+)
XLOC_021678 NA coding downstream 794747 23918648 ~ 23918969 (+)
XLOC_021666 NA non-coding upstream 427420 22572158 ~ 22593289 (+)
XLOC_021660 NA non-coding upstream 1105783 21906053 ~ 21914926 (+)
XLOC_021659 CR548634.2 non-coding upstream 1237259 21781577 ~ 21783450 (+)
XLOC_021679 NA non-coding downstream 899554 24023455 ~ 24071239 (+)
XLOC_021680 dre-mir-200b non-coding downstream 948128 24072029 ~ 24072110 (+)
XLOC_021681 dre-mir-200a non-coding downstream 948259 24072160 ~ 24072245 (+)
XLOC_021682 dre-mir-429a non-coding downstream 949914 24073815 ~ 24073896 (+)

Expression


Co-expression Network