XLOC_021682 (dre-mir-429a)


Basic Information

Item Value
gene id XLOC_021682
gene name dre-mir-429a
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 24073815 ~ 24073896 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043032
CTTGTTGATGGACGTCTTACCAGACATGGTTAGATGTAATAACTTGTGTCTAATACTGTCTGGTAATGCCGTCCATCACATG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000081438

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043032 True 82 miRNA 0.41 1 24073815 24073896

Neighbor

gene id symbol gene type direction distance location
XLOC_021681 dre-mir-200a coding upstream 1570 24072160 ~ 24072245 (+)
XLOC_021680 dre-mir-200b coding upstream 1705 24072029 ~ 24072110 (+)
XLOC_021679 NA coding upstream 2576 24023455 ~ 24071239 (+)
XLOC_021677 ptpn11b coding upstream 77959 23918421 ~ 23995856 (+)
XLOC_021678 NA coding upstream 154846 23918648 ~ 23918969 (+)
XLOC_021683 dre-mir-7149 coding downstream 187 24074083 ~ 24074155 (+)
XLOC_021684 ttll10 coding downstream 11635 24085531 ~ 24113207 (+)
XLOC_021685 si:dkey-21o19.2 coding downstream 50788 24124684 ~ 24131962 (+)
XLOC_021686 NA coding downstream 59885 24133781 ~ 24140410 (+)
XLOC_021687 CR925709.3 coding downstream 74159 24148055 ~ 24148771 (+)
XLOC_021672 AL928977.1 non-coding upstream 1057514 22953379 ~ 23016301 (+)
XLOC_021689 NA non-coding downstream 409416 24483312 ~ 24492037 (+)
XLOC_021691 BX957326.2 non-coding downstream 482559 24556455 ~ 24560873 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G132281 NA non-coding NC_035911.1 CM008314.1 15636898 ~ 15637590 (-)