XLOC_021679


Basic Information

Item Value
gene id XLOC_021679
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 24023455 ~ 24071239 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044823
GTCGACGTGTTCCTGAAAGAGACGCTGTTGTCGAGTTTGACAATGGCTCGTGGAGCTCAAACAGGTTGTTTGAGGATCTCCTCACTGCTTCACcctcatctgaaaaaaaaaactcgacCCTCTGGTACAATAAACCAAGATGTCATCTGAAACCTACAGTACCAGCCCTCATGTTAAACAGGTAGCATCACCTTGAGCTCTCGTCTTCATTGGGACAAAGACTAGCCTGATATGCCGCTCCGTTCATTTCTCCGCCTGACGTTGTGTTGGGAATCCGGTTTCCCGCCTCAAGATGGTCTCCTTCCTGGCTTTCGGTGGTGAAAAGCTTACAGGGCGTCGTTCAGCTGTAAAAAGAAGAGAAGGACGAGCTGGAGAACTGACGCAGTATCCAGTGGATCAACCAAGTAAgagaaGGCCTGCTGCACTGGTTTATAATGCTGATGATTAACCAAATAGAGGCTGCGGTCTGGGCGAGCAGGTCTGCTTGGGCTTTTCATTGCATGAGTCCTGATCGAACAAGAGGAAGCTGAAGCCTTTTTCAGCCACTTGCTGGACATTTTATGggtttttttgtctttcttttcccTCCTTACTAGCTTTTTTTGTTACTTTAGCAGGGTCTCTTTCATGACGGTAAGGTTACAggcactcactcactctctctctctctttccttacGTTTGCACTCTCTTTTTTCCCTCCCATTCTCTCGTCTTCTGCTCCCCCTTACAGACCTCATTTCTTCTTTTCTCACGAGATCTATCAATTCAGTTCTTTGTAACAATAATCGAACACTTTTATTTGCTTTGTGGAGATGGAAAAAGTTTGATTTTTGGTATTTTAAAAGACGTGCTACTTCACATTTATATATATCAAGAAAAAATTTATACTAGCCTTCTTAAGATTCATTATTAGAAGTGATTTATTTTACCATGTTTCTGTTATGCtaaaatttgttttttgattaataatttattacCTTGTGGAATAATTAGCATGATTTTGAGTCTGTTTTACACCTATAACTGGGTTTTTAAAAGAATTACTACTCTATTTCACAgtcttttaaaagtattttaggtCTACTCTTCGTTTACCACCTCTCTCCAATAATTAGCTATTATGCTAACATTTGTGACTGAATAAAGCAAGTTTAGGAGTCTCTCACTTCATGCAATAATTAATGTGATTTCTTGTTTGGGTGTTTAAAAAGTGTCAACAACTACTTAACTTTAAAACGAACATACTTTTTAGTCTATTTTTatcataaaatgtaattaatgcattatttttcCACCTCTCTCCAAGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044823 True 1309 lncRNA 0.39 3 24023455 24071239

Neighbor

gene id symbol gene type direction distance location
XLOC_021677 ptpn11b coding upstream 27599 23918421 ~ 23995856 (+)
XLOC_021678 NA coding upstream 104486 23918648 ~ 23918969 (+)
XLOC_021676 agrn coding upstream 108768 23485858 ~ 23914687 (+)
XLOC_021675 plekhn1 coding upstream 770787 23232136 ~ 23252668 (+)
XLOC_021674 klhl17 coding upstream 808856 23182037 ~ 23214599 (+)
XLOC_021680 dre-mir-200b coding downstream 790 24072029 ~ 24072110 (+)
XLOC_021681 dre-mir-200a coding downstream 921 24072160 ~ 24072245 (+)
XLOC_021682 dre-mir-429a coding downstream 2576 24073815 ~ 24073896 (+)
XLOC_021683 dre-mir-7149 coding downstream 2844 24074083 ~ 24074155 (+)
XLOC_021684 ttll10 coding downstream 14292 24085531 ~ 24113207 (+)
XLOC_021672 AL928977.1 non-coding upstream 1007154 22953379 ~ 23016301 (+)
XLOC_021671 NA non-coding upstream 1082226 22940532 ~ 22941229 (+)
XLOC_021666 NA non-coding upstream 1430166 22572158 ~ 22593289 (+)
XLOC_021660 NA non-coding upstream 2108529 21906053 ~ 21914926 (+)
XLOC_021686 NA non-coding downstream 62542 24133781 ~ 24140410 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G18513 NA non-coding CI01000001 null 8414953 ~ 8418574 (-)