XLOC_021680 (dre-mir-200b)


Basic Information

Item Value
gene id XLOC_021680
gene name dre-mir-200b
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 24072029 ~ 24072110 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043030
GGTAGTCGTCTCCATCTTACGAGGCAGCATTGGATTTCATTACTTTTTCTAATACTGCCTGGTAATGATGATGATTGCTGCC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000081868

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043030 True 82 miRNA 0.43 1 24072029 24072110

Neighbor

gene id symbol gene type direction distance location
XLOC_021679 NA coding upstream 790 24023455 ~ 24071239 (+)
XLOC_021677 ptpn11b coding upstream 76173 23918421 ~ 23995856 (+)
XLOC_021678 NA coding upstream 153060 23918648 ~ 23918969 (+)
XLOC_021676 agrn coding upstream 157342 23485858 ~ 23914687 (+)
XLOC_021675 plekhn1 coding upstream 819361 23232136 ~ 23252668 (+)
XLOC_021681 dre-mir-200a coding downstream 50 24072160 ~ 24072245 (+)
XLOC_021682 dre-mir-429a coding downstream 1705 24073815 ~ 24073896 (+)
XLOC_021683 dre-mir-7149 coding downstream 1973 24074083 ~ 24074155 (+)
XLOC_021684 ttll10 coding downstream 13421 24085531 ~ 24113207 (+)
XLOC_021685 si:dkey-21o19.2 coding downstream 52574 24124684 ~ 24131962 (+)
XLOC_021672 AL928977.1 non-coding upstream 1055728 22953379 ~ 23016301 (+)
XLOC_021671 NA non-coding upstream 1130800 22940532 ~ 22941229 (+)
XLOC_021666 NA non-coding upstream 1478740 22572158 ~ 22593289 (+)
XLOC_021686 NA non-coding downstream 61671 24133781 ~ 24140410 (+)
XLOC_021687 CR925709.3 non-coding downstream 75945 24148055 ~ 24148771 (+)

Expression


Co-expression Network