XLOC_021633 (dpm1)


Basic Information

Item Value
gene id XLOC_021633
gene name dpm1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 20513104 ~ 20517692 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042938
CTGATTTCCACGGACAGCAAATCTGATGTAAACATCCGGTGTTTACTATAGACGCCAACATGGCGAGCCGCAGAAGTAATGCGAAGAGTCGGGACAAACCTGACAAATATTCTGTCCTTCTGCCGACTTACAATGAGCGAGAAAACCTCCCGTTGATCGTCTGGTTGCTGGTGAAGTATTTCGGCGAAAGTGGCTACAACTATGAGATCATAGTCATCGATGATGGCAGTCCAGACGGAACACTGCAGATCGCCGAGCAGCTGCAGAAGATTTACGGCGCGGATAAAATTCTCCTGAGACCGCGAGCAGAAAAGCTGGGATTAGGTACTGCCTACATCCACGGCATTAAACATGCAACAGGAAACTTCGTTATCATAATGGATGCAGATCTGTCACATCATCCAAAGTTTATCCCACAGTTCATTGAAAAACAGAAAGAAGGTGGATATGACCTGGTGTCTGGCACAAGGTACAGAGGAGATGGTGGTGTGTATGGATGGGATCTGCGGCGAAAACTCATCAGtcgAGGGGCAAACTTTGTAACACAAGTTCTGCTCAGACCAGGAGCGTCTGATCTTACTGGGAGTTTTAGGCTCTATAAGAAAGAGGTTCTGGAAAAACTAGTGGAGCAGTGTGTGTCAAAAGGCTATGTGTTCCAGATGGAGATGATTGTCCGGGCCAGACAACTGGGCTATACAATTGGAGAGGTTCCCATTTCATTTGTGGACCGTGTTTATGGAGAGTCCAAATTAGGTGGAAATGAAATCGTCTCCTTCCTGAAAGGACTGCTCACTCTTTTTGCCACTACATGACCTTTGACCTATTTGGTTGCATTTAGTGTTGTGATGTATGATCAGCGCTTATTATCACTGCAGTGGAGCGAGAAGCTAGAATAATTACTTGATTACCAAGTAATGAGGTCATTATGCTTGGATTTACCACGTTCCTTCTACTTAGTTTTGTTAATTACTAGgcaatgtttagaaatgtacatTCAAATGTTCTGAATTGTAATAAAAGGACCAAACTGAGAGCTAGTTTTTGAAGTACTAACACTTATTTCATATGAACTATGTTTTTAGGCTATAAAAAGCATCATTGTGGTTCTATTAAGAAATGAACTCATCCCTACAAACTGGATTCATTCAATGACTGAAATGTTCTTCTCAAAATGCTTCTCAAACTGAATTTCTGTGAAAACCCTTTAAATATTCATTTGAGCATTCACATGTATTGTTTTGTACCTTTACGAATGGCAATagagatgtcttaaaataaaaaaaatattgttccaAAA
>TCONS_00042939
GGTGTTTACTATAGACGCCAACATGGCGAGCCGCAGAAGTAATGCGAAGAGTCGGGACAAACCTGACAAATATTCTGTCCTTCTGCCGACTTACAATGAGCGAGAAAACCTCCCGTTGATCGTCTGGTTGCTGGTGAAGTATTTCGGCGAAAGGTAATTGCGAAACCTGAATAAAACCAGCTGTCAGCTTGTAGAAGTCCTAATGATGAGCTGTCAGTGACGTCACGCTAGAAGAGgaactgtaattttttttatcggTTTTAAGtgctcatttatttcattaatgcAGTGGCTACAACTATGAGATCATAGTCATCGATGATGGCAGTCCAGACGGAACACTGCAGATCGCCGAGCAGCTGCAGAAGATTTACGGCGCGGATAAAATTCTCCTGAGACCGCGAGCAGAAAAGCTGGGATTAGGTACTGCCTACATCCACGGCATTAAACATGCAACAGGAAACTTCGTTATCATAATGGATGCAGATCTGTCACATCATCCAAAGTTTATCCCACAGTTCATTGAAAAACAGAAAGAAGGTGGATATGACCTGGTGTCTGGCACAAGGTACAGAGGAGATGGTGGTGTGTATGGATGGGATCTGCGGCGAAAACTCATCAGtcgAGGGGCAAACTTTGTAACACAAGTTCTGCTCAGACCAGGAGCGTCTGATCTTACTGGGAGTTTTAGGCTCTATAAGAAAGAGGTTCTGGAAAAACTAGTGGAGCAGTGTGTGTCAAAAGGCTATGTGTTCCAGATGGAGATGATTGTCCGGGCCAGACAACTGGGCTATACA

Function

symbol description
dpm1 Predicted to enable dolichyl-phosphate beta-D-mannosyltransferase activity and dolichyl-phosphate-mannose-protein mannosyltransferase activity. Acts upstream of or within muscle structure development. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane. Is expressed in brain; cloaca; pronephric duct; solid lens vesicle; and vertical myoseptum. Used to study congenital disorder of glycosylation type I. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ie. Orthologous to human DPM1 (dolichyl-phosphate mannosyltransferase subunit 1, catalytic).

GO:

id name namespace
GO:0035269 protein O-linked mannosylation biological_process
GO:0019348 dolichol metabolic process biological_process
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0061061 muscle structure development biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0004169 dolichyl-phosphate-mannose-protein mannosyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0004582 dolichyl-phosphate beta-D-mannosyltransferase activity molecular_function

KEGG:

id description
ko00510 N-Glycan biosynthesis
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-040801-115 Predicted to enable dolichyl-phosphate beta-D-mannosyltransferase activity and dolichyl-phosphate-mannose-protein mannosyltransferase activity. Acts upstream of or within muscle structure development. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane. Is expressed in brain; cloaca; pronephric duct; solid lens vesicle; and vertical myoseptum. Used to study congenital disorder of glycosylation type I. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ie. Orthologous to human DPM1 (dolichyl-phosphate mannosyltransferase subunit 1, catalytic).

Ensembl:

ensembl_id ENSDARG00000057011

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042938 False 1297 mRNA 0.41 9 20513104 20517692
TCONS_00042939 True 797 lncRNA 0.46 7 20513141 20516174

Neighbor

gene id symbol gene type direction distance location
XLOC_021631 slc35c2 coding upstream 1150 20431140 ~ 20511954 (+)
XLOC_021632 CR352228.2 coding upstream 41234 20471755 ~ 20471870 (+)
XLOC_021630 tnnc2 coding upstream 85805 20422661 ~ 20427299 (+)
XLOC_021629 TNNC2 coding upstream 92861 20408227 ~ 20420243 (+)
XLOC_021628 NA coding upstream 151678 20345310 ~ 20361426 (+)
XLOC_021634 adnpb coding downstream 812 20518504 ~ 20530056 (+)
XLOC_021635 camkvl coding downstream 46087 20563779 ~ 20636740 (+)
XLOC_021636 uba1 coding downstream 122792 20640484 ~ 20664621 (+)
XLOC_021637 arhgef3l coding downstream 151457 20669149 ~ 20684086 (+)
XLOC_021638 usp21 coding downstream 169648 20687340 ~ 20701863 (+)
XLOC_021627 AL953864.1 non-coding upstream 325365 20187625 ~ 20187739 (+)
XLOC_021614 NA non-coding upstream 1036953 19473396 ~ 19476151 (+)
XLOC_021613 CR388168.1 non-coding upstream 1294164 19217528 ~ 19218940 (+)
XLOC_021651 NA non-coding downstream 955410 21473102 ~ 21474482 (+)
XLOC_021656 CR847529.1 non-coding downstream 1106043 21623735 ~ 21623849 (+)
XLOC_021659 CR548634.2 non-coding downstream 1263885 21781577 ~ 21783450 (+)
XLOC_021660 NA non-coding downstream 1388361 21906053 ~ 21914926 (+)
XLOC_021666 NA non-coding downstream 2054466 22572158 ~ 22593289 (+)

Expression


Co-expression Network