Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00042939 |
| length | 797 |
| lncRNA type | retained_intron |
| GC content | 0.46 |
| exon number | 7 |
| gene id | XLOC_021633 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 20513104 ~ 20517692 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0035269 | protein O-linked mannosylation | biological_process |
| GO:0019348 | dolichol metabolic process | biological_process |
| GO:0006506 | GPI anchor biosynthetic process | biological_process |
| GO:0061061 | muscle structure development | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0004169 | dolichyl-phosphate-mannose-protein mannosyltransferase activity | molecular_function |
| GO:0016740 | transferase activity | molecular_function |
| GO:0016757 | transferase activity, transferring glycosyl groups | molecular_function |
| GO:0004582 | dolichyl-phosphate beta-D-mannosyltransferase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040801-115 | Predicted to enable dolichyl-phosphate beta-D-mannosyltransferase activity and dolichyl-phosphate-mannose-protein mannosyltransferase activity. Acts upstream of or within muscle structure development. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane. Is expressed in brain; cloaca; pronephric duct; solid lens vesicle; and vertical myoseptum. Used to study congenital disorder of glycosylation type I. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ie. Orthologous to human DPM1 (dolichyl-phosphate mannosyltransferase subunit 1, catalytic). |
| ensembl_id | ENSDART00000131388 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00044813 | lncRNA | upstream | 151715 | 20345310 ~ 20361426 (+) | True | XLOC_021628 |
| TCONS_00042925 | lncRNA | upstream | 534404 | 19977329 ~ 19978737 (+) | True | XLOC_021625 |
| TCONS_00042921 | lncRNA | upstream | 696771 | 19813711 ~ 19816370 (+) | False | XLOC_021624 |
| TCONS_00042914 | lncRNA | upstream | 734985 | 19776460 ~ 19778156 (+) | False | XLOC_021623 |
| TCONS_00042905 | lncRNA | upstream | 909233 | 19597676 ~ 19603908 (+) | True | XLOC_021616 |
| TCONS_00042946 | lncRNA | downstream | 128422 | 20644596 ~ 20649116 (+) | True | XLOC_021636 |
| TCONS_00042949 | lncRNA | downstream | 171217 | 20687391 ~ 20693148 (+) | False | XLOC_021638 |
| TCONS_00042950 | lncRNA | downstream | 171285 | 20687459 ~ 20693145 (+) | False | XLOC_021638 |
| TCONS_00042963 | lncRNA | downstream | 745216 | 21261390 ~ 21277522 (+) | True | XLOC_021646 |
| TCONS_00042966 | lncRNA | downstream | 847900 | 21364074 ~ 21367221 (+) | False | XLOC_021647 |
| TCONS_00042932 | mRNA | upstream | 1187 | 20431388 ~ 20511954 (+) | False | XLOC_021631 |
| TCONS_00042933 | mRNA | upstream | 1193 | 20431474 ~ 20511948 (+) | False | XLOC_021631 |
| TCONS_00042931 | mRNA | upstream | 66646 | 20431140 ~ 20446495 (+) | False | XLOC_021631 |
| TCONS_00042934 | mRNA | upstream | 69128 | 20431548 ~ 20444013 (+) | False | XLOC_021631 |
| TCONS_00042935 | mRNA | upstream | 74052 | 20431692 ~ 20439089 (+) | False | XLOC_021631 |
| TCONS_00042940 | mRNA | downstream | 2330 | 20518504 ~ 20527716 (+) | False | XLOC_021634 |
| TCONS_00042941 | mRNA | downstream | 7443 | 20523617 ~ 20530056 (+) | True | XLOC_021634 |
| TCONS_00042942 | mRNA | downstream | 47605 | 20563779 ~ 20636740 (+) | True | XLOC_021635 |
| TCONS_00042943 | mRNA | downstream | 124310 | 20640484 ~ 20664621 (+) | False | XLOC_021636 |
| TCONS_00042944 | mRNA | downstream | 124701 | 20640875 ~ 20648942 (+) | False | XLOC_021636 |
| TCONS_00042937 | other | upstream | 41271 | 20471755 ~ 20471870 (+) | True | XLOC_021632 |
| TCONS_00042936 | other | upstream | 42546 | 20448905 ~ 20470595 (+) | True | XLOC_021631 |
| TCONS_00042927 | other | upstream | 325402 | 20187625 ~ 20187739 (+) | True | XLOC_021627 |
| TCONS_00042920 | other | upstream | 691404 | 19813705 ~ 19821737 (+) | False | XLOC_021624 |
| TCONS_00042922 | other | upstream | 691678 | 19813719 ~ 19821463 (+) | False | XLOC_021624 |
| TCONS_00042958 | other | downstream | 551215 | 21067389 ~ 21114732 (+) | False | XLOC_021644 |
| TCONS_00042986 | other | downstream | 1107561 | 21623735 ~ 21623849 (+) | True | XLOC_021656 |
| TCONS_00043003 | other | downstream | 2074884 | 22591058 ~ 22591155 (+) | True | XLOC_021666 |
| TCONS_00043017 | other | downstream | 2504535 | 23020709 ~ 23049140 (+) | False | XLOC_021673 |
| TCONS_00043030 | other | downstream | 3555855 | 24072029 ~ 24072110 (+) | True | XLOC_021680 |
