RNA id: TCONS_00042934


Basic Information

Item Value
RNA id TCONS_00042934
length 2298
RNA type mRNA
GC content 0.42
exon number 10
gene id XLOC_021631
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 20431140 ~ 20511954 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAAACCTAACGCTCCGAGACGACTCGCGCGACCAAATGATGGTTACATAGTGTTTATTAGCAGCAGCTTCTCGTTTTGGAGGACTATGTAAACAGTGAGagtGTTAGCTGAGCCCTGTGGTATCCGGGTTGTCCAGGATGGCGTGCCCGACACACTTCCTCTGCAAGGCGCTGCGCACTGTGGGTCTGGTGCTTTTCTACTATGCGTTTTCTATTGGCATAACCTTCTACAACAAATGGCTCATGAAGGACTTCCACTTTCCTCTTTTTATGACCCTGGTCCATCTCACTATAATATTCTGTTTATCCACACTGACACGCTCTGCTATGCAGTGCTGGACAGGAAAGCCTCGAGTTACTCTTCCCTGGAAGGTCTACCTTTCTAAAGTAGCCCCTACAGCCCTGGCGACAACGTTGGATATTGGACTGTCCAACTGGAGTTTCCTTTTCATCACTATTAGTTTgTACACCATGACCAAGTCTTCAGCTGTTCTTTTCATTCTGTTTTTCTCCTTGCTATTCAAACTGGAGGAGCCGAATCCATTCCTGATCCTGGTGGTTGTCCTGATTTCCAGTGGTCTCTTCATGTTCACTCTCAAGTCCACTCAGTTTAATCTGGAGGGTTTCATCATGGTCCTGTTAGCCTCTTTTATCGGAGGAATCCGCTGGACTCTCACTCAGTTGCTCATGCAGAAAGCAGAGCTTGGTCTTCAGAACCCCATAGACACCATGTACCATCTGCAGCCCCTCATGTTCCTTGGCCTATTTCCCTTGTTTCTTCTTAATGAGGGACTGAGTGTGAGCACCACAGAGAAGCTGTTCAGGGTCAGTGAGCTCTCTCACCTGCTGTACTCTTTAGTCACTCTGTCTGTGGGTGGCATGCTGGCGTTCGGGCTCGGCTTCTCTGAGTTCCTGCTGGTGTCACGCACGTCCAGTCTTACACTGTCCATTGCAGGCATTTTTAAGGAGGTGTGCACTCTGCTGCTGGCAGTGGAGTTCTTGGGGGATAAAATGAGCACAGTCAACTGGCTTGGTTTTGCTGTGTGCCTGTCTGGGATATCACTTCATATTGGCCTAAAAACATACCGTAACAAAGTAGGAAATGGCCCCATGGTAAGAAACCTACAAGTCAGGGAGAACCCACACCTTGAGCTTCCACTTCTGCAGGCAAAAGATGACTACTGTGAAGACACAAATGACGAAGAGGAGCATGAGATTCTCTATTAGTCTGAGGAAGAAATGAGTGTCCTGAATGGGCTCATGGAATAGTCTTCTTTAAAGACTCATATCAGTGCTCCCATTGAACACAGGTACTGAACAAGCTCCAGAATATATGAGAATGAACTCAAAAAGATATTGAAGAGCTAATGTTTTTTATAGTTCGTCTCTGTGTTAATGAGAGAACAGAGAAATGCTCTTGGGAAAAGAGAACTCTAAAAGAAAGTGAGTTCATCCTAACATCGTCATCCATATCCAGGAGTTCATCCATATAATGAAAATGGATGGGGAAACGACCTGCTAAGGTATTAAAAAAGGACCATATATGTAGACCGACTGACTTGTGCACAATATTAAAGGTATTTTGATGCCATATGATAGACAAGGAATTCTGTCATAAAGCTTTTAGGACAAAGAGAGAATTGacatgtatgtaaaaaaaaatgccttcAACCATGCTTATGGCGTCGGTTGCATCACAGGACGAGTCTTAAGTGGCCTTACGATTCAAGCTTTTGCTAATAAAATTTCAGGTCAGTTATCAGTCGCTCACAATAATTTGTTTTCTAATTATGACGTAGAGATAATGAGTAAAttactttgtttttaataaaaagaagaaacTCTCCTGTGGATTCTTTTAATTTTGCAAGTCAATTTTATGAATTACAACTACAAGTATTtcatatgtatttaattttcagAATTCAGCCAATGTTATCAACTCTTTATTAAAAGAGGGAAGCATCTACTTCAGCAAAGCAGAGTAGATTATGCAGCCTCCAGTAATTAGATTTGTTTGGAGTATTGGTGCAGGTGGAGGGAAGCCTGTATAATTCTTGCTTTGATTGAGTTCATTGAGTTGGTTTAGTGGATTAATCTAAAGTCAGAGGGCTTCAGTTTCCAAGATCAAGAGTGAGCACATGGCTCTGAATTCACTTAAACGGAAAATGCCCTTCAGTTTGTACACTTTCTTCATCGAGATCATAGTGTATAGTGAACTTTTATGACACTTTTGCTGCtgatttttagtcatttttggctgaaaattatgattttattaaacagattttaaaagaa

Function

GO:

id name namespace
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-030131-2202 Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be part of collagen trimer. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in neuromast. Orthologous to human SLC35C2 (solute carrier family 35 member C2).

Ensembl:

ensembl_id ENSDART00000109899

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044813 lncRNA upstream 70122 20345310 ~ 20361426 (+) True XLOC_021628
TCONS_00042925 lncRNA upstream 452811 19977329 ~ 19978737 (+) True XLOC_021625
TCONS_00042921 lncRNA upstream 615178 19813711 ~ 19816370 (+) False XLOC_021624
TCONS_00042914 lncRNA upstream 653392 19776460 ~ 19778156 (+) False XLOC_021623
TCONS_00042905 lncRNA upstream 827640 19597676 ~ 19603908 (+) True XLOC_021616
TCONS_00042939 lncRNA downstream 69128 20513141 ~ 20516174 (+) True XLOC_021633
TCONS_00042946 lncRNA downstream 200583 20644596 ~ 20649116 (+) True XLOC_021636
TCONS_00042949 lncRNA downstream 243378 20687391 ~ 20693148 (+) False XLOC_021638
TCONS_00042950 lncRNA downstream 243446 20687459 ~ 20693145 (+) False XLOC_021638
TCONS_00042963 lncRNA downstream 817377 21261390 ~ 21277522 (+) True XLOC_021646
TCONS_00042930 mRNA upstream 4249 20422661 ~ 20427299 (+) True XLOC_021630
TCONS_00042929 mRNA upstream 4826 20422661 ~ 20426722 (+) False XLOC_021630
TCONS_00042928 mRNA upstream 11305 20408227 ~ 20420243 (+) True XLOC_021629
TCONS_00042926 mRNA upstream 318952 20110086 ~ 20112596 (+) True XLOC_021626
TCONS_00042924 mRNA upstream 449735 19977120 ~ 19981813 (+) False XLOC_021625
TCONS_00042938 mRNA downstream 69091 20513104 ~ 20517692 (+) False XLOC_021633
TCONS_00042940 mRNA downstream 74491 20518504 ~ 20527716 (+) False XLOC_021634
TCONS_00042941 mRNA downstream 79604 20523617 ~ 20530056 (+) True XLOC_021634
TCONS_00042942 mRNA downstream 119766 20563779 ~ 20636740 (+) True XLOC_021635
TCONS_00042943 mRNA downstream 196471 20640484 ~ 20664621 (+) False XLOC_021636
TCONS_00042927 other upstream 243809 20187625 ~ 20187739 (+) True XLOC_021627
TCONS_00042920 other upstream 609811 19813705 ~ 19821737 (+) False XLOC_021624
TCONS_00042922 other upstream 610085 19813719 ~ 19821463 (+) False XLOC_021624
TCONS_00042917 other upstream 623297 19801136 ~ 19808251 (+) True XLOC_021623
TCONS_00042916 other upstream 632509 19795438 ~ 19799039 (+) False XLOC_021623
TCONS_00042936 other downstream 4892 20448905 ~ 20470595 (+) True XLOC_021631
TCONS_00042937 other downstream 27742 20471755 ~ 20471870 (+) True XLOC_021632
TCONS_00042958 other downstream 623376 21067389 ~ 21114732 (+) False XLOC_021644
TCONS_00042986 other downstream 1179722 21623735 ~ 21623849 (+) True XLOC_021656
TCONS_00043003 other downstream 2147045 22591058 ~ 22591155 (+) True XLOC_021666

Expression Profile

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