RNA id: TCONS_00042929


Basic Information

Item Value
RNA id TCONS_00042929
length 954
RNA type mRNA
GC content 0.51
exon number 6
gene id XLOC_021630
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 20422661 ~ 20427299 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCTGTTGGGGTGCGAGCGTGTTGACCACTGCTTGTCTCGTGGATATAAGTGAGGGAAGCTAAACCACAATCATGgCCATCTGATACTAACCATTCATAATGTAACAACGTGTTGTTTCACAGACTGACGCGCAACAGGAGGCCCGCTCATATCTGAGCGAGGAAATGCTTGCCGAGTTCAAGGCTGCCTTCGACATGTTCGATACTGACGGTGGCGGTGATATCAGCACCAAGGAGTTGGGTACTGTCATGAGGATGTTGGGTCAGAATCCAACCAGAGAGGAGCTGGAAGAAATCATCGAGGAGGTCGATGAAGACGGCAGCGGCTCCATCGACTTTGAAGAGTTCTTGGTCATGATGGTGAGACTCCTTAAGGAGGACCAGGCTGGCAAGAGCGAGGAAGAGTTGGCCGAATGCTTCCGCGTGCTGGACAAGAACGGTGATGGCTACATCGACAGAGATGAGTTTGCTGAGATCATCCGCAGCACTGGTGAATCCATTTCAGAGGAGGAGATCGATGAGCTGCTTAAAGACGGAGACAAAAACAACGATGGCATGCTGGACTTTGATGAATTCCTCAAGATGATGGAGAACGTGCAGTAAAAACAGAGACTCATGGACATTCCTCTCCCCTTTCACCCCTGCCGACTGAATCCCTGCCCTCATAACGCCACCCAAACTCACTTTCCCCTTTTGTCCTCTTTCTGCCTCCATCTCACCTCCgcagcagacagacagatgaacactTGTGTGGGGTTTGCCAAGGCTGGGCTCCCACTGATCCTCATACGCAAGACCCAAGGAGCGAAGCTGTGGTGTGGTTCGCAGCTTCATGATGTTGATATGTTCGCTAGAAACACACGCCATGGTAGACCCCTCATTTGTGGGTGTCTTTAGTCTAGATTTAGTCTAGATCAGCAGCTTGTTATCGCTGCATAGACCAATGCCAAAGC

Function

GO:

id name namespace
GO:0014823 response to activity biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0005861 troponin complex cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function
GO:0051015 actin filament binding molecular_function

KEGG:

id description
ko04020 Calcium signaling pathway
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-000322-2 Predicted to enable actin filament binding activity; calcium ion binding activity; and calcium-dependent protein binding activity. Acts upstream of or within response to activity. Predicted to be part of troponin complex. Is expressed in fast muscle cell; head muscle; heart tube; skeletal muscle; and skeletal muscle cell. Orthologous to human TNNC2 (troponin C2, fast skeletal type).

Ensembl:

ensembl_id ENSDART00000144047

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044813 lncRNA upstream 61235 20345310 ~ 20361426 (+) True XLOC_021628
TCONS_00042925 lncRNA upstream 443924 19977329 ~ 19978737 (+) True XLOC_021625
TCONS_00042921 lncRNA upstream 606291 19813711 ~ 19816370 (+) False XLOC_021624
TCONS_00042914 lncRNA upstream 644505 19776460 ~ 19778156 (+) False XLOC_021623
TCONS_00042905 lncRNA upstream 818753 19597676 ~ 19603908 (+) True XLOC_021616
TCONS_00042939 lncRNA downstream 86419 20513141 ~ 20516174 (+) True XLOC_021633
TCONS_00042946 lncRNA downstream 217874 20644596 ~ 20649116 (+) True XLOC_021636
TCONS_00042949 lncRNA downstream 260669 20687391 ~ 20693148 (+) False XLOC_021638
TCONS_00042950 lncRNA downstream 260737 20687459 ~ 20693145 (+) False XLOC_021638
TCONS_00042963 lncRNA downstream 834668 21261390 ~ 21277522 (+) True XLOC_021646
TCONS_00042928 mRNA upstream 2418 20408227 ~ 20420243 (+) True XLOC_021629
TCONS_00042926 mRNA upstream 310065 20110086 ~ 20112596 (+) True XLOC_021626
TCONS_00042924 mRNA upstream 440848 19977120 ~ 19981813 (+) False XLOC_021625
TCONS_00042918 mRNA upstream 600438 19813677 ~ 19822223 (+) False XLOC_021624
TCONS_00042931 mRNA downstream 4418 20431140 ~ 20446495 (+) False XLOC_021631
TCONS_00042932 mRNA downstream 4666 20431388 ~ 20511954 (+) False XLOC_021631
TCONS_00042933 mRNA downstream 4752 20431474 ~ 20511948 (+) False XLOC_021631
TCONS_00042934 mRNA downstream 4826 20431548 ~ 20444013 (+) False XLOC_021631
TCONS_00042935 mRNA downstream 4970 20431692 ~ 20439089 (+) False XLOC_021631
TCONS_00042927 other upstream 234922 20187625 ~ 20187739 (+) True XLOC_021627
TCONS_00042920 other upstream 600924 19813705 ~ 19821737 (+) False XLOC_021624
TCONS_00042922 other upstream 601198 19813719 ~ 19821463 (+) False XLOC_021624
TCONS_00042917 other upstream 614410 19801136 ~ 19808251 (+) True XLOC_021623
TCONS_00042916 other upstream 623622 19795438 ~ 19799039 (+) False XLOC_021623
TCONS_00042936 other downstream 22183 20448905 ~ 20470595 (+) True XLOC_021631
TCONS_00042937 other downstream 45033 20471755 ~ 20471870 (+) True XLOC_021632
TCONS_00042958 other downstream 640667 21067389 ~ 21114732 (+) False XLOC_021644
TCONS_00042986 other downstream 1197013 21623735 ~ 21623849 (+) True XLOC_021656
TCONS_00043003 other downstream 2164336 22591058 ~ 22591155 (+) True XLOC_021666

Expression Profile

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