RNA id: TCONS_00042936


Basic Information

Item Value
RNA id TCONS_00042936
length 714
RNA type processed_transcript
GC content 0.50
exon number 6
gene id XLOC_021631
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 20431140 ~ 20511954 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGAAGTGAGTAACCGGGACTCAATGTGTTAACATCCCTTACCTGTGAGGAATGCGCCAGGTACAGGCTTCAGCTTCAGGTTTTTTAATTGGTACTAACACATTCACGATGGCCCACATCTCTCCTCTCGTCCTCCCAGAGCGAATGACAATCTTCCTGGTGACTGTTCTCCTGATACTGGTTTCTGAAGTTCAAACACAAGGCAGACTGAAGCTAACTGTTCTGTCTGAAGATCGGTTACAGATGAAATGGAAGGAGGCTGAAGGGCCGGTTCAGGGCTACAAGGTCCGTGTGCGACCCATTACAGAAGTTCCTCAGCCAGAGCTGATGCTGACAACCACACGTGGACGTGCCACAGTCGCTGGCCTGGACTCCAGACAGGAATACCTCCTTCAGGTTATGGCAATCAACGGGACACAGGAGAAGCTTATTGCAAAAAGACGCTTTACAATTGATGGGCTGCGTGAGGAAGAGTTGATCCGCAGTGGGAACCGGGAGCAGAAGAAGAAAACTCCCGCTATTGGCTCAGGCTCTGGAGAGGTGGATGACGTGACGGAGGCTTTAGAAGGCCTTCCCACTGTGCTCTACAGAGAACCAACCACTACAGAGCCTTCTGTTGTACCAGAGCTTGAGCCTGAAGCTGACCAAGGCACCaaagagaagaaaaagaagaaggacAAAAATCGATCCAAGGCTGAAGATAGAATTGATCAG

Function

GO:

id name namespace
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-030131-2202 Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be part of collagen trimer. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in neuromast. Orthologous to human SLC35C2 (solute carrier family 35 member C2).

Ensembl:

ensembl_id ENSDART00000137294

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044813 lncRNA upstream 87479 20345310 ~ 20361426 (+) True XLOC_021628
TCONS_00042925 lncRNA upstream 470168 19977329 ~ 19978737 (+) True XLOC_021625
TCONS_00042921 lncRNA upstream 632535 19813711 ~ 19816370 (+) False XLOC_021624
TCONS_00042914 lncRNA upstream 670749 19776460 ~ 19778156 (+) False XLOC_021623
TCONS_00042905 lncRNA upstream 844997 19597676 ~ 19603908 (+) True XLOC_021616
TCONS_00042939 lncRNA downstream 42546 20513141 ~ 20516174 (+) True XLOC_021633
TCONS_00042946 lncRNA downstream 174001 20644596 ~ 20649116 (+) True XLOC_021636
TCONS_00042949 lncRNA downstream 216796 20687391 ~ 20693148 (+) False XLOC_021638
TCONS_00042950 lncRNA downstream 216864 20687459 ~ 20693145 (+) False XLOC_021638
TCONS_00042963 lncRNA downstream 790795 21261390 ~ 21277522 (+) True XLOC_021646
TCONS_00042931 mRNA upstream 2410 20431140 ~ 20446495 (+) False XLOC_021631
TCONS_00042934 mRNA upstream 4892 20431548 ~ 20444013 (+) False XLOC_021631
TCONS_00042935 mRNA upstream 9816 20431692 ~ 20439089 (+) False XLOC_021631
TCONS_00042930 mRNA upstream 21606 20422661 ~ 20427299 (+) True XLOC_021630
TCONS_00042929 mRNA upstream 22183 20422661 ~ 20426722 (+) False XLOC_021630
TCONS_00042938 mRNA downstream 42509 20513104 ~ 20517692 (+) False XLOC_021633
TCONS_00042940 mRNA downstream 47909 20518504 ~ 20527716 (+) False XLOC_021634
TCONS_00042941 mRNA downstream 53022 20523617 ~ 20530056 (+) True XLOC_021634
TCONS_00042942 mRNA downstream 93184 20563779 ~ 20636740 (+) True XLOC_021635
TCONS_00042943 mRNA downstream 169889 20640484 ~ 20664621 (+) False XLOC_021636
TCONS_00042927 other upstream 261166 20187625 ~ 20187739 (+) True XLOC_021627
TCONS_00042920 other upstream 627168 19813705 ~ 19821737 (+) False XLOC_021624
TCONS_00042922 other upstream 627442 19813719 ~ 19821463 (+) False XLOC_021624
TCONS_00042917 other upstream 640654 19801136 ~ 19808251 (+) True XLOC_021623
TCONS_00042916 other upstream 649866 19795438 ~ 19799039 (+) False XLOC_021623
TCONS_00042937 other downstream 1160 20471755 ~ 20471870 (+) True XLOC_021632
TCONS_00042958 other downstream 596794 21067389 ~ 21114732 (+) False XLOC_021644
TCONS_00042986 other downstream 1153140 21623735 ~ 21623849 (+) True XLOC_021656
TCONS_00043003 other downstream 2120463 22591058 ~ 22591155 (+) True XLOC_021666
TCONS_00043017 other downstream 2550114 23020709 ~ 23049140 (+) False XLOC_021673

Expression Profile

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