RNA id: TCONS_00042921


Basic Information

Item Value
RNA id TCONS_00042921
length 887
lncRNA type retained_intron
GC content 0.40
exon number 5
gene id XLOC_021624
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 19813677 ~ 19822223 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGACACGCCCAGCTCAGGAAAGCGCCTTTTTAACGTTCTGGAATCATTTACGATATGTCGTCATTAAGTGTGAAATCGGATAAAGAGATCTGCCAGCTGCTGGATGAATATGGCATCAAACATGGACCCATAGTAGAATCCACAAGGAAGCTCtatgaaaaaaaactgaatgaggCCATGGCCAAAAAAACCAAGCCTTCCTCACCTGACAAAACATACTACAGAGAAGAACAGGAAGAAGTGGAATATGTTACCTATCATCAGCCCCAGCAACAAACAAGACACGAAGTATATGGTGATGTGTGagtaactttatttaattttttcgcAATACTAATATCTGTCAGtatcccctttcacacagtgataccggtaaatatccagaaaatttccataacgactttaccggtaaataaaaacaaaaaggtgtTCACACGGGCATGGACATTGCCttatttttccggaaaagaccattcacacattccAAAATGGCAgtttctgacatcattaaccaaaaatgacctataaacggctgcacttgtaaacatagaaggggcCGACCTTTTCtcgatggtttcacttttatctttagcattcatgcagctgctttgtgagACATCTAAAGGCAGAAGCACGAaccacagctaaatgtttacacacttgactacattacaaattctgtggatggataagtattgtcaACGACTTATataaaacatatggaggaacactttcacatatTGACATgctcataatatgtgtgtgtgctgacgctcaccggctgcttcacgtgcacatgtgaagcaactgaagcagagcttgaaggtaaacaaacagcggtttatcataaacacCTTATCGGtaattacacagttggcattaagaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko05410 Hypertrophic cardiomyopathy
ko05412 Arrhythmogenic right ventricular cardiomyopathy
ko05414 Dilated cardiomyopathy

ZFIN:

id description
ZDB-GENE-070501-2 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in heart. Human ortholog(s) of this gene implicated in Emery-Dreifuss muscular dystrophy; X-linked Emery-Dreifuss muscular dystrophy 1; and dilated cardiomyopathy. Orthologous to human EMD (emerin).

Ensembl:

ensembl_id ENSDART00000148237

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042914 lncRNA upstream 35555 19776460 ~ 19778156 (+) False XLOC_021623
TCONS_00042904 lncRNA upstream 209803 19594239 ~ 19603908 (+) False XLOC_021616
TCONS_00042905 lncRNA upstream 209803 19597676 ~ 19603908 (+) True XLOC_021616
TCONS_00042902 lncRNA upstream 212816 19594239 ~ 19600895 (+) False XLOC_021616
TCONS_00042903 lncRNA upstream 215390 19594456 ~ 19598321 (+) False XLOC_021616
TCONS_00042925 lncRNA downstream 160959 19977329 ~ 19978737 (+) True XLOC_021625
TCONS_00044813 lncRNA downstream 528940 20345310 ~ 20361426 (+) True XLOC_021628
TCONS_00042939 lncRNA downstream 696771 20513141 ~ 20516174 (+) True XLOC_021633
TCONS_00042946 lncRNA downstream 828226 20644596 ~ 20649116 (+) True XLOC_021636
TCONS_00042949 lncRNA downstream 871021 20687391 ~ 20693148 (+) False XLOC_021638
TCONS_00042913 mRNA upstream 4684 19759128 ~ 19809027 (+) False XLOC_021623
TCONS_00042915 mRNA upstream 15447 19790962 ~ 19798264 (+) False XLOC_021623
TCONS_00042912 mRNA upstream 101723 19701587 ~ 19711988 (+) True XLOC_021622
TCONS_00042911 mRNA upstream 117735 19691146 ~ 19695976 (+) True XLOC_021621
TCONS_00042910 mRNA upstream 135778 19675780 ~ 19677933 (+) True XLOC_021620
TCONS_00042924 mRNA downstream 160750 19977120 ~ 19981813 (+) False XLOC_021625
TCONS_00042926 mRNA downstream 293716 20110086 ~ 20112596 (+) True XLOC_021626
TCONS_00042928 mRNA downstream 591857 20408227 ~ 20420243 (+) True XLOC_021629
TCONS_00042929 mRNA downstream 606291 20422661 ~ 20426722 (+) False XLOC_021630
TCONS_00042930 mRNA downstream 606291 20422661 ~ 20427299 (+) True XLOC_021630
TCONS_00042917 other upstream 5460 19801136 ~ 19808251 (+) True XLOC_021623
TCONS_00042916 other upstream 14672 19795438 ~ 19799039 (+) False XLOC_021623
TCONS_00042898 other upstream 236465 19560074 ~ 19577246 (+) False XLOC_021615
TCONS_00042896 other upstream 594771 19217528 ~ 19218940 (+) True XLOC_021613
TCONS_00042887 other upstream 631323 19177891 ~ 19182388 (+) False XLOC_021608
TCONS_00042927 other downstream 371255 20187625 ~ 20187739 (+) True XLOC_021627
TCONS_00042936 other downstream 632535 20448905 ~ 20470595 (+) True XLOC_021631
TCONS_00042937 other downstream 655385 20471755 ~ 20471870 (+) True XLOC_021632
TCONS_00042958 other downstream 1251019 21067389 ~ 21114732 (+) False XLOC_021644
TCONS_00042986 other downstream 1807365 21623735 ~ 21623849 (+) True XLOC_021656

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_05942155_05943721.mRNA True 825 mRNA 0.39 5 CI01000001 5942155 ~ 5944019 (+)