Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00042905 |
| length | 954 |
| lncRNA type | retained_intron |
| GC content | 0.49 |
| exon number | 5 |
| gene id | XLOC_021616 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 19590006 ~ 19604413 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006936 | muscle contraction | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-040426-809 | Predicted to be involved in protein localization to plasma membrane; regulation of membrane depolarization during cardiac muscle cell action potential; and regulation of voltage-gated sodium channel activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in epidermis; median fin fold; nervous system; neural crest; and pharyngeal arch 3-7 skeleton. Orthologous to human SLMAP (sarcolemma associated protein). |
| ensembl_id | ENSDART00000140422 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00044812 | lncRNA | upstream | 121525 | 19473396 ~ 19476151 (+) | True | XLOC_021614 |
| TCONS_00042893 | lncRNA | upstream | 397483 | 19198361 ~ 19200193 (+) | True | XLOC_021610 |
| TCONS_00042889 | lncRNA | upstream | 415288 | 19177891 ~ 19182388 (+) | False | XLOC_021608 |
| TCONS_00042914 | lncRNA | downstream | 172552 | 19776460 ~ 19778156 (+) | False | XLOC_021623 |
| TCONS_00042921 | lncRNA | downstream | 209803 | 19813711 ~ 19816370 (+) | False | XLOC_021624 |
| TCONS_00042925 | lncRNA | downstream | 373421 | 19977329 ~ 19978737 (+) | True | XLOC_021625 |
| TCONS_00044813 | lncRNA | downstream | 741402 | 20345310 ~ 20361426 (+) | True | XLOC_021628 |
| TCONS_00042939 | lncRNA | downstream | 909233 | 20513141 ~ 20516174 (+) | True | XLOC_021633 |
| TCONS_00042897 | mRNA | upstream | 13862 | 19558574 ~ 19583814 (+) | False | XLOC_021615 |
| TCONS_00042899 | mRNA | upstream | 15273 | 19564392 ~ 19582403 (+) | True | XLOC_021615 |
| TCONS_00042895 | mRNA | upstream | 376649 | 19213472 ~ 19221027 (+) | True | XLOC_021612 |
| TCONS_00042894 | mRNA | upstream | 391257 | 19202636 ~ 19206419 (+) | True | XLOC_021611 |
| TCONS_00042892 | mRNA | upstream | 396348 | 19198244 ~ 19201328 (+) | False | XLOC_021610 |
| TCONS_00042906 | mRNA | downstream | 2383 | 19606291 ~ 19652915 (+) | True | XLOC_021617 |
| TCONS_00042907 | mRNA | downstream | 51393 | 19655301 ~ 19661674 (+) | False | XLOC_021618 |
| TCONS_00042908 | mRNA | downstream | 51448 | 19655356 ~ 19667758 (+) | True | XLOC_021618 |
| TCONS_00042909 | mRNA | downstream | 66177 | 19670085 ~ 19673769 (+) | True | XLOC_021619 |
| TCONS_00042910 | mRNA | downstream | 71872 | 19675780 ~ 19677933 (+) | True | XLOC_021620 |
| TCONS_00042898 | other | upstream | 20430 | 19560074 ~ 19577246 (+) | False | XLOC_021615 |
| TCONS_00042896 | other | upstream | 378736 | 19217528 ~ 19218940 (+) | True | XLOC_021613 |
| TCONS_00042887 | other | upstream | 415288 | 19177891 ~ 19182388 (+) | False | XLOC_021608 |
| TCONS_00042879 | other | upstream | 866277 | 18731322 ~ 18731399 (+) | True | XLOC_021602 |
| TCONS_00042875 | other | upstream | 906194 | 18688357 ~ 18691482 (+) | False | XLOC_021600 |
| TCONS_00042916 | other | downstream | 191530 | 19795438 ~ 19799039 (+) | False | XLOC_021623 |
| TCONS_00042917 | other | downstream | 197228 | 19801136 ~ 19808251 (+) | True | XLOC_021623 |
| TCONS_00042920 | other | downstream | 209797 | 19813705 ~ 19821737 (+) | False | XLOC_021624 |
| TCONS_00042922 | other | downstream | 209811 | 19813719 ~ 19821463 (+) | False | XLOC_021624 |
| TCONS_00042927 | other | downstream | 583717 | 20187625 ~ 20187739 (+) | True | XLOC_021627 |
