RNA id: TCONS_00042940


Basic Information

Item Value
RNA id TCONS_00042940
length 3636
RNA type mRNA
GC content 0.46
exon number 4
gene id XLOC_021634
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 20518504 ~ 20530056 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCTGGACCGGGTCGTATTGTTTAAGTGGATGGCAGATTGCGTTAATTGCAGTCAATTACATCGTCATCGCGCGTCTTGTAGACTGTGCATCATCGCAAACGCAGCGCGCGCTCGGCTTTTCGCGCTCTTAATCCCACCAGGACAGCCGTAGACCCGCACAGGCACTGTTTAGATGAGTTGCAGCAGCTCTTTCCCGGCAGACAGGCAGCTCTGGGTCGGCCCGTAACAGGAGGCGAGCTCCCTCTTTCGGCGTGGTGTGTTCGCCCGTAAAGCGGAGGACTGGTGGCTCGGTTCGGGAGGCGGGAAAGCGACATTACGGGCTGCGGTTTGCGGGAGCGCGGGACAGgTAGAAGAATGTTTCAACTCCCAGTGAACAACCTCAGCAGTCTAAGAAAAGCTAggaaaaatgtgaaaaaggtgCTGGGTGACATTGGCTTGGATTTTTGCAAGGAACATGTTGATgaCTACAAGGATTTTGTTCCCAATGAGTTCTACCTTAAGAACACCACATGGGATGATGTCTGCATGTGGGATCCCTCTATGACCAAATCACAAgatTACCGTTCAAAGCCGTTCTGTTGCTCAGGATGTACATTCTCCTCCAAGTTTTTCTCAGCCTACAAAAGTCACTTTCGCAATGTGCACAGCGAGGACTTCGAAAACCGTATTCTCCTGAACTGCCCCTATTGCACCTATAATGGGAACAAAAAGACTTTGGAGACACACATCAGGTTGTTTCATATGCCTAATGTTGTGCGTCAGAATACTGGAGGACTTCATGGGGCAGGGGTTGGTTTGAAAGATGGTGCTCGTCTGGAAAAGACACGTGATAATATAGAACAAGCAGTGTACTACTGCAAGAAATGCACTTACAGGGACCCACTGTATAATGTGGTACGAAAGCATATCTACCGGGAACATTTCCAACATGTTGCGGCACCATACTTGGTGAGGCCTGGCGAGAAGACAACAACACCAAATGGGACAACGGCAGGTTCTGGTACAGGGAGCACTACTGATGGTGGTGTTGCCAACAGTATGAGCACAGCCATCCACTGTAAACGGTGCCTCTTTGTTCCACGTACCTATGAAGCCCTTGTCCAACATGTCATTGAGGATCATGAGCGCATTGGTTATCAAGTAACTGCCATGATTGGACACACTAATGTAGTGGTACCTCGGGCCAAGCCTGTTATTATGGTCTCACCAAAATCTCAGAGCGAGAAAACTGTTGGTGGTGTAATGCCAAAGAGCGCAGTAGTGACTGGGGTAAGGCCTTTATCCACTCAGCAGTTAAGTCGAATTGTCATTCCTAAAGGGAGTTTGAACTCTAGTGGGCTCCTGTCAGGGGTTCACCTAAAACAGGGGGTATTTGGTTTGAAACCAGGGGCTACACAGTCCTTGTCGATTGGAGGACAACAAGTGCAACTCTCAATCCCTCAACAGTCTCAAACAAGCAAACCACAGCTCTCTGCTAGTCTCCGCAGCGCAGTTTCTGCATCTGCATCAACGTCCATACTAAAAATTCCACAATTGAACTCTCGAGTTCAGGCAGCAGCTACTACTGTGTCAGCCGTTACCTCCAAGAAGGGCAATTCTGTCATCGGCACATCTTACACTCAAAAATGGAAGATCTGCACTATCTGCAATGAACTCTTTCCAGAAAATGTGTACAGTTCACATTTTGAAAAAGAGCACAAAGCAGAAAAGGTTCCAGCAGTGGCCAATTACATTATGAAAATTCATAACTTTACCAGTAAATGCTTATACTGCAACCGTTACCTACCTAGTGACACACTTCTGAACCACATGTTGATACATGGCCTATCTTGCCCACACTGCAGGGCCACATTCAATGATGTGGAAAAAATGGTGACGCACATGCGAGGGGTGCATCCCAATGAATCTGTAGGGCCACGGACAGACTCCCCACTTACTTTTGACCTTACACTTCAGCAGGGAAATCCCAAGAATGTCCAGCTGATTGTCACCACATATAACATGCGGGATGCCCCAGAAGAATCTGTAGCATTCCATGCCCAAAATAATGCTTTACCACCATCATTGCAGGGGAATAAACAGGTTACGCCAACAATCCCAAAGATACCCTCAGATGCCTCAGGCGCCATGCCTGTTAAGGCTACGCCGCAAGCAGCTGTACCTTATAAGAAGGATATAGGAAAAACACTTTGTCCTTTATGCTTCTCGATTCTTAAGGGACCTATTTCAGATTCTCTTGCTCACCACTTGCGTGACCGCCATCAAGTTATTCAAACGGTTCACCCTGTGGAGAAGAAGTTGACCTACAAGTGCATCCATTGCCTTGGCGTCTACACTAGTAACATGACGGCTTCCACAATTACTTTGCATCTAGTGCACTGTCGTGGTGTCAGCAAAACTCAAAACGGCCGCCCTGCTCCCTCTGCAAGAGTTGTACAGGCTCAGGGGGCTGGTCTCAAACGTGCAGGTTTAGCAAACTTTGACCAAACTGAACCAAAGAGAAAAAAACCTGATGATCAGACCGGGCAGAGCCCATCACCTTCAACTGAGAAACACGAGGAGCCAGTAGTCTTTGCCTTGGATCCGAAGGGCTATGAGAATGAGTCCTACGAGACCCGAAAAGCTTTCCTCACTCAGTACTTCAACAAGCAGCCTTATCCCACTCGCCGGGAGGTGGAGAAGCTTGCGTCCAGCCTCTGGCTTTGGAAGTCTGACATTGCGAGCCACTTCTCAAATCGGAGGAGAAGATGTTTGCTGAATTGCGAAACTTTAAACACTCGGGTCCTGATGGGATTTAAAATGGAAGACGTTTTAAACTTGGATCATCCCTTGAACTTTGACTCAAAATGCTATTTCCAGAATCATAAACATGATCATAAAAGACGAACTACTCGATTTCGCATAGGTCGATCTGCCAATGCTATTCTCTTACGACAAAAAGCTACAACCAATGGTGACCTGCAGCAGAAGCATGAAATGCTACCAAGGGTTTCCAGCAAAGCTTTGCTCTACTCAAATGGTCAAAATGCTATCATAGGCAGCAACTGCTTTGATTCAGTAAAAAGCACCTTAAAATCTGGAGCGCTTGTCAATTCTGAACCAATTTCTGTAGACTCAGACAGTGATAATGAGGGGAATGTGCAGGATGCTAGTCTAACGGCTCTTTCGCTTAGCCATGAGGAACCAGCGACAAATGATAAAGTTGAAGGGAGTGACTCTGATGTCAGGGAGAATGCCCACAGCGAAAACGGTTACGGGTCAACAGACTTGTTAAATGAAACAAGCCAGCAAGATGACGAATGCCAGTCAGGTATCACAAACAAGCTTGAACAATCAGAGACTCAGTTAACCGAGCAACAGGTCTGATTTCTGCACAGGGTTAATAAAGTGCACACGTATCCTTTTGCGTTACATTTGTCGTACACCAACAGTGCTGCCTCATTGAACTTCTGGACCTTGGTTACAGATGGTAGCTATAAGGATCTGCTTTTATCTCTACTCCGAAAGCCATTTGAGAGAGgcaaaaaggtcatattttacaTATTGAAATATGAAGATGAACGCAAATTTTGTTTATGAATTTGGGAGCCACTTTTTCTCTGGATCGAAAAAGAAAACGCTCAACATTTAACAA

Function

GO:

id name namespace
GO:0043249 erythrocyte maturation biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6385 Predicted to enable DNA binding activity and metal ion binding activity. Acts upstream of or within erythrocyte maturation. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Helsmoortel-Van Der Aa Syndrome. Orthologous to human ADNP (activity dependent neuroprotector homeobox).

Ensembl:

ensembl_id ENSDART00000114246

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042939 lncRNA upstream 2330 20513141 ~ 20516174 (+) True XLOC_021633
TCONS_00044813 lncRNA upstream 157078 20345310 ~ 20361426 (+) True XLOC_021628
TCONS_00042925 lncRNA upstream 539767 19977329 ~ 19978737 (+) True XLOC_021625
TCONS_00042921 lncRNA upstream 702134 19813711 ~ 19816370 (+) False XLOC_021624
TCONS_00042914 lncRNA upstream 740348 19776460 ~ 19778156 (+) False XLOC_021623
TCONS_00042946 lncRNA downstream 116880 20644596 ~ 20649116 (+) True XLOC_021636
TCONS_00042949 lncRNA downstream 159675 20687391 ~ 20693148 (+) False XLOC_021638
TCONS_00042950 lncRNA downstream 159743 20687459 ~ 20693145 (+) False XLOC_021638
TCONS_00042963 lncRNA downstream 733674 21261390 ~ 21277522 (+) True XLOC_021646
TCONS_00042966 lncRNA downstream 836358 21364074 ~ 21367221 (+) False XLOC_021647
TCONS_00042938 mRNA upstream 812 20513104 ~ 20517692 (+) False XLOC_021633
TCONS_00042932 mRNA upstream 6550 20431388 ~ 20511954 (+) False XLOC_021631
TCONS_00042933 mRNA upstream 6556 20431474 ~ 20511948 (+) False XLOC_021631
TCONS_00042931 mRNA upstream 72009 20431140 ~ 20446495 (+) False XLOC_021631
TCONS_00042934 mRNA upstream 74491 20431548 ~ 20444013 (+) False XLOC_021631
TCONS_00042942 mRNA downstream 36063 20563779 ~ 20636740 (+) True XLOC_021635
TCONS_00042943 mRNA downstream 112768 20640484 ~ 20664621 (+) False XLOC_021636
TCONS_00042944 mRNA downstream 113159 20640875 ~ 20648942 (+) False XLOC_021636
TCONS_00042945 mRNA downstream 116795 20644511 ~ 20650839 (+) False XLOC_021636
TCONS_00042947 mRNA downstream 141433 20669149 ~ 20684086 (+) True XLOC_021637
TCONS_00042937 other upstream 46634 20471755 ~ 20471870 (+) True XLOC_021632
TCONS_00042936 other upstream 47909 20448905 ~ 20470595 (+) True XLOC_021631
TCONS_00042927 other upstream 330765 20187625 ~ 20187739 (+) True XLOC_021627
TCONS_00042920 other upstream 696767 19813705 ~ 19821737 (+) False XLOC_021624
TCONS_00042958 other downstream 539673 21067389 ~ 21114732 (+) False XLOC_021644
TCONS_00042986 other downstream 1096019 21623735 ~ 21623849 (+) True XLOC_021656
TCONS_00043003 other downstream 2063342 22591058 ~ 22591155 (+) True XLOC_021666
TCONS_00043017 other downstream 2492993 23020709 ~ 23049140 (+) False XLOC_021673
TCONS_00043030 other downstream 3544313 24072029 ~ 24072110 (+) True XLOC_021680

Expression Profile

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