RNA id: TCONS_00042963


Basic Information

Item Value
RNA id TCONS_00042963
length 4614
lncRNA type retained_intron
GC content 0.43
exon number 20
gene id XLOC_021646
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 21261313 ~ 21277522 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGCATCGGCGGTATTTGAAGACCAGGTTGGAAAGTTTGATTGGAGGCAACAGTACATCGGCAAGGTGCGTTTTGCCTTGTTTGATACTCATTCTCAAGCGTCTAAAAAGCTCCTGGTGGCCACCGACAAGAACGTGTTTGCTTCCCTAAACTCAAGGACTGGAGACCTGTTCTGGCGTCATGTGGACAAGACTGGACCCGAGGGCCATATTGATGCACTGCTTATGCATGGCCAGGATGCTGTTGTTGTTGTCGGGAATGGCCGTCTGCTTCGCTCCTGGGAGACTACAGTCGGAGGCTTGAAGTGGGAGACTGTGCTTGATTCTGGAagTTTTCAGGCCGCTGCTTTAGTTGGAGTTCAAGATTATGTGAAGTACGTTGCTGTGCTGAAGAAATCGACAATCGCTCTCCATGACCTTTCAAGTGGCAGCCAAACATGGGTGGAAAACCTACCTGACAGTGACACTGTTCAGTATCAAACCATTTACTCTGGGGGGAATGGCCTAGTGTTTGTTTTGGGAGTTTTGCCAAACTCTCACATTGTTATTGTTGAATACAAAATTGAAGATGGAGAAATCATGAACAAGaAATCAGTTGAAGCCGCCTGGATGTCTAGCCTGGAGAGCAGCTGTGTAGTGGTCAGCTCAGGGATCCTGATGTGTGTGGATCAGATCACACAGTCCCTGTACACTCAACCACTGCACTCTGCCGAACAAACAGAAATGAGACAGATCCATCTTCAGACGCTAGATTTGGAGGTGGCGTCTGGATTCCAGCCTGTTTTGACATCCACTCAGCCCAGTCCAGCACATCCTCCGCTGGCTGAGTTCATCCTGCAGCTCAGTCCAGAACATCACATCTTGCTGCAGCTCAAAGACGGACTTATCGCGCCGCTCCGAGACTTCAGTCCATCTTATCTTGCTGCTTTTGCCACATCTGGAGAGAAGACAGTTGTTGCTGTGATGTCCCCAAAGAATGATACTGCCTGCAGCATCAATCTGTTCAGTGCTGACACTGGCCGCAGGCACCTTGACACAACCATTATCTACCACACAGACCCTTACGGAGGAAAACCAAATAAATTGTATGTCCACGCCTTCCTAAAAAAAGATGACTCGGTGGGCTACAGAGTCATGGTACAGACGGAAGACCTTACACTCACATTTCTGCAGCAGCCTGGCAGGGTGGTCTGGATGAGGGAGGAGGCTCTGGCTGATGTGGTAAACATGGAGATGGTTGATCTGCCACTTACTGGGACACAGGCAGAGCTGGAAGGAGAGTTTGGGAAGAAAGCTGGTAAAGCGTAACAAATGGAAGATATTATGTGTTTTGTTCTTGCTTGCTAATTACATAATGCTTATAGGCATGTTTTTCCATCCTGTGATTTTGGAGCTATCCAGTTATGAAGCATTATTtcaaaaaatgaatacattttacagATAATGTTGAAAAGAAAGCATTTGAAAGCTGTTTTAATTCAGGTTTTATGTATGTATTGTGTGTatctgtatatttgtgtgtgttatttCAACCTGCACTATCTGTGTGTGATGTATGGCCAGTGTGTGTTGTTACCTGTGATGTTTCTGCTTTTTGCTTATCACTTGTCTCGCTCATCTGTCCTGTTTTCAGTGGCTTTCTTGCAATTTCTTTCTATATTTATTTCCTTGTGTGTTTTCTTTTGCCTATCTGCTGCATTCGGATCCAGCCATTCAAGGTATAGTAAAGAGCTTACTCTAATTTGCTGCTCTTCCTAATCacctttatgtatttatttttttttttcagtgtctcTTAACTTCTGGAAAAACGCATTTTGTCTCAAGAAGGTGTTTTCTTTGGTATGTCTGACACTCATCAGCGTGATCTCTTGTTTCCTGCAGACGGACTGTTACCCATGGTTCTCAAGCGTCTCTCTTCCCAGTTCATCTTGCTACAGGCCTGGATGGCTCATCTCTGGAAACTTTTCTATGATGCCCGAAAGCCCCGCAGCAGTGTGAAGAACGAGATCACCATAGACACACTGTCTCGTGACGAGTTCAACCTGCAGAAAATGATGGTAATGGTTACTGCCTCTGGGAAGCTCTTTGGCATCGACAGTAGATCAGGGACTGTTTTGTGGAAGCAGTATTTAGAAAACATCAAGCCCAATTCGTTTTTCAAGCTCATTGTGCAAAGGACTACTGCCCACTTTCCACATCCACCACAGTGCACACTTCTTATAAAGGACCAGgaTACAGGGCTTGGAAGCCTGTATGTCTTCAATCCCATCTTCGGCAAGAAAAGTCAAATTAGTGTCCCAGCGTTACCCAGACCTATCCTTCAGTCTCTTCTGTTACCTGTCATCGACCAGGACTATTCTAAAGTCCTTCTACTTATTGATGATCAGAACAAAGTCACAGCATTTCCATCTACTAAGAATATTCTGCAGCAGCTTCAGGAGACTGCATCTTCCATATTTTTCTACCTAGTGGACTCCAACCAGGGAAAGCTGTCGGGTTTTCGTCTGCGCACGGTTTGCATTCACCATCAGAATCAAGCATACAGATGGAAAACGCATTTAATGTTGGTGTTCATTAgtgattattcatttttttcgttCAGGATTTGTCTACAGAACTGATCTGGGAAGTTGTTATCCCTACCGAGGTGCAGAAGATAGTGGCTGTCAAAGGGAAGCGTGCAAATGAACACGTGCATTCCCAAGGCAGAGTCATGGGGGATCGTAGCGTGCTCTACAAATATCTGAACCCTAATCTCTTGGCTGTGATAACTGAAAGCACAGACACTCATCAGGAACGCAGCTTTGTTGGAATCTTCCTGATTGACGGTGTGACTGGCCGTATTGTGCATGAGGCTGTGCAGCGAAAGGCCAGAGGGCCAGTTCACTGTGTGCACTCTGAAAACTGGGTGATTTATGTGTACTGGAACTCCAAGTTTCGCAGGAATGAGTTTTCTGTGTTGGAGCTGTTTGAGGGAGCAGAGCTCTATAACAGCACGGTGTTCAGCTCTCTGGACAGACCTCATCCACCTCAGGTGCTGCAGCAGTCCTACATCTTTCCTGCTCCTATAAGCACTTTGGAGGCCACACTTACAGAAAAAGGCATCACCAGTCGACACCTTCTCGTGGGGCTGCCATCAGGCAACATTTTATCCTTACCAAAGATGTTTTTGGACCCCAGGAGACCAGAGGTGGTCTCAGAACAGAGTCGGGAGGAAAATCTTATACCATATGCTCCAGAAATGCCCATTCGTACAGAATGGTTCATTAACTACAACCAAACCGTATCAAGAGTAAGAGGCATCTATACTGCCCCATCTGGCCTGGAGTCAACCTGTTTGGTGGTTGCATACGGCCTTGACATCTACCAGACTAGAGTGTTCCCTTCCAAACAATTTGATGTCCTTAAGGATGACTATGACTATGTCTTAATCAGCAGTGTCCTCCTCGGTCTCTTCTTTGCCACCATGATCAGCAAACGTCTAGCGGAAGTGAAACTGCTCAATAGGGCATGGCGATAAGACTCATCCTGATGGCCTGTTGACTTCACTCTCGCCTTCACTGCAATGTGGTCGACACATTGATGGCAGAAGACCAGCTGGTGACCATGTCAAAACCGCAAGATCATTTGACGAGTTTGGTATCTTTTTGCAACCAGCTGTCTTGGGGATCTTGTGGTGTTTTGAGTGTAAGTGCAAAGATGGCCATGatcgtttttttttccccttttcagaGAGACATAATGATGTAGGTTTAGTTTTTACCCCCCTCAGCATTGAACAATTCACTgtctaatttgtttatttattgtgccTTTCGGGGTAACATTACTAATGTGATTTAAAGGTAGACTGACCAGGTATAACATAATAGCATTGTCGCATTTGATTCACTAAGTCTAGAGTCTGCCTTTCAAAAAGGTTGAAGGATAAATTCATGTATTAAAACTGAGGAGGAAATGCTGCAAAGGAACTGCCATTGTTATTTCAATTTATGAaaaggttgattgattgattgattgattgattgattgattgattgattgattgattgattgattgattgattttggggttttaagtttaattattcAAGTTACTATGTATGAGCTGACCCTAATGAATATATTGGCTCATCTCATGTACAGGATTTGAATGGACAAACATTAATGCACATGAGAAATGTAAAATTTCAAGCTGTCAAAGGTTCTGCGTTTGAAGGAGTTTGGGTAGTTTTATTTGTACTTATTTTATGGTATGTCAAATGCACTGGATGGTTTGGAGCCATTTTCTTACTTGATATTTATGAGCAAGATCCCAATATGCCAtatcatacatttattttgacTCATACACGTTACAAATCCCTGTGATTTTATTATTGTGTAAAATGTTTCTACTCATTTGATTTTCATAAATAATGAGCCTGTTTATATACATACTTTTGAAAGTGTCCCCTCTGCTGCAGATTAATGATGTCAgaagaataagtttattaatatttgtaacaAAAGGGTAGGCATTCAGTTAAGTTGGTAACCtgatgattttttaaaacatgcaTAAATTATTTGTTCTTTTATCCCTAATCGATAATAAAGAATACACCCTTA

Function

GO:

id name namespace
GO:0072546 endoplasmic reticulum membrane protein complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-060810-98 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of EMC complex. Orthologous to human EMC1 (ER membrane protein complex subunit 1).

Ensembl:

ensembl_id ENSDART00000141903

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042949 lncRNA upstream 568242 20687391 ~ 20693148 (+) False XLOC_021638
TCONS_00042950 lncRNA upstream 568245 20687459 ~ 20693145 (+) False XLOC_021638
TCONS_00042946 lncRNA upstream 612274 20644596 ~ 20649116 (+) True XLOC_021636
TCONS_00042939 lncRNA upstream 745216 20513141 ~ 20516174 (+) True XLOC_021633
TCONS_00044813 lncRNA upstream 899964 20345310 ~ 20361426 (+) True XLOC_021628
TCONS_00042966 lncRNA downstream 86552 21364074 ~ 21367221 (+) False XLOC_021647
TCONS_00042967 lncRNA downstream 93714 21371236 ~ 21373932 (+) True XLOC_021647
TCONS_00044814 lncRNA downstream 195580 21473102 ~ 21474478 (+) False XLOC_021651
TCONS_00042978 lncRNA downstream 195584 21473106 ~ 21474482 (+) True XLOC_021651
TCONS_00042989 lncRNA downstream 504055 21781577 ~ 21783450 (+) True XLOC_021659
TCONS_00042960 mRNA upstream 78124 21181074 ~ 21183266 (+) True XLOC_021645
TCONS_00042959 mRNA upstream 146900 21067684 ~ 21114490 (+) True XLOC_021644
TCONS_00042956 mRNA upstream 324545 20863145 ~ 20936845 (+) False XLOC_021643
TCONS_00042957 mRNA upstream 324545 20931030 ~ 20936845 (+) True XLOC_021643
TCONS_00042955 mRNA upstream 446906 20803270 ~ 20814484 (+) True XLOC_021642
TCONS_00042964 mRNA downstream 1426 21278948 ~ 21376367 (+) False XLOC_021647
TCONS_00042965 mRNA downstream 1469 21278991 ~ 21376847 (+) False XLOC_021647
TCONS_00042968 mRNA downstream 102557 21380079 ~ 21417936 (+) False XLOC_021648
TCONS_00042969 mRNA downstream 127679 21405201 ~ 21410836 (+) False XLOC_021648
TCONS_00042970 mRNA downstream 136483 21414005 ~ 21417872 (+) True XLOC_021648
TCONS_00042958 other upstream 146658 21067389 ~ 21114732 (+) False XLOC_021644
TCONS_00042937 other upstream 789520 20471755 ~ 20471870 (+) True XLOC_021632
TCONS_00042936 other upstream 790795 20448905 ~ 20470595 (+) True XLOC_021631
TCONS_00042927 other upstream 1073651 20187625 ~ 20187739 (+) True XLOC_021627
TCONS_00042920 other upstream 1439653 19813705 ~ 19821737 (+) False XLOC_021624
TCONS_00042986 other downstream 346213 21623735 ~ 21623849 (+) True XLOC_021656
TCONS_00043003 other downstream 1313536 22591058 ~ 22591155 (+) True XLOC_021666
TCONS_00043017 other downstream 1743187 23020709 ~ 23049140 (+) False XLOC_021673
TCONS_00043030 other downstream 2794507 24072029 ~ 24072110 (+) True XLOC_021680
TCONS_00043031 other downstream 2794638 24072160 ~ 24072245 (+) True XLOC_021681

Expression Profile

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