XLOC_021642 (zgc:154075)


Basic Information

Item Value
gene id XLOC_021642
gene name zgc:154075
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 20803270 ~ 20814484 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042955
TAAACAAGGAAGTGAAGGAGTCGTGGCTCGGTCTAAACTGTCGTGTTTCGTTTTACGTACACGAATGTAATCCCGAATGAAGTTTTATATTTATACTCACAACAATGCACTTATAGGATTGTGACCAGATTCTGAGACATATACTGTGTCTTGAATCAGGATTCGTGGTGTCAGTTTGTTATAAGATCCGCTAAAAATGCCGCCACCTGTGCAAGTCATCGTGGTTGGAGCTGGAAACAGAGGAGAAAACTATTCAGATTATGCTAAGATTTTTCCTGACCGCATGCAGGTAGTAGGAGTTGCGGACCCCAGAGAGTTTGTTCGAAAGAAACTTCAAGCACGTCACAAAATACCTGATCAAAACACATTCAAAGACTGGCGTTGTGTAGTGGAAAGAGAGAAGTTTGCAGATGCAGTGCTGATCTGCACTCCTGATCGCCTTCACAAGGACCCTGCAGTGGCGTTAGCTAAGAAAGGCTACCATATATTGCTGGAGAAACCAATGGCTGTAACAGAGCAGGACTGCACAGAGATTGTAGAAGCTATCATTCAGAATGGTGTCATATTTGCTGTGGGCCATGTTCTCCGATACGATCCCGTCATccacaaaataaaaCTGCTGATTGACAGTGGAGCGGTCGGAGACGTCATCCACATTCAACACTTGGAACCGGTGGGGTTCTATCATTTTGCTCACTCCTTTGTCAGAGGGAACTGGAGAAACGAGGCAGAAAGCTCTTTTGCGCTGTTAGCCAAATCCTGCCATGATCTGGATCTGATTCATCACTGGGCTGGAGGACGAAGGTGTATCAAAGTTTCATCATTCGGGTCGCTTAGCCACTTCACTAAAGAGAACAAGCCAAAAGAGGCTGCAAATCGCTGTTTAGACTGTCCTGTAGAGGGAGATTGTGCATACTCTGCAAAGAAAATCTACTTGGATCGAGTGAAAAAGGGTGCTGTTGGCTGGCCAGTGTCAGTGATTTGTTCCAACTCGCTTCCTGATATTGAATCAGTGACTGAAGCCCTGAGAACTGGACCTTATGGGCGCTGCGTCTACGACTGTGACAACGATGTGTGCTCAAATCAGGTAGTGAACATGGAGTTTGAAGGAGGCTTGACTGCCGCATTCACCATGGTTGCATTCACAAAGGAAATATGTAATCGCAAAACCACTATCTATGGTAGTAAGGGTGAACTGACCTGCGATGGACATGAGATCACAGTGTTCGACTTCCTCGGCAATAAAACCACAAAACACACCTCAGATGGGACAGTTCCAGGGAACTTTGCTAAAGGAGGTCACGGCTGTGCAGATTTTCATCTTATTGATTCCTTCATTTCAGCTGTGACGAATGGAGACCCAACTATGATCAGGTCTGGTCCTATGGAGACTTTAGTAAGCCATAAGCTAGTGTTTCAGGCTGAACGTGCCCGTTTGGAAAACAGAGTGGTGTTCTGTGAGAATCCCTGTGATGGAGAAAGCAGATGAGTGGATAGGGGAAACAAATCTGCAGGTtatggatttgttttattttacactaTAAATTTAAACTCTGTGTTGATCTAGATGTTCTTGCTGTACACACTTTTGTCATTGTGATTTTGAAATGATATCcaaatgttgtcttgttttttaaaatgaatgtaatcATTTATGAGTTATAAAACAGTAAATGTTGAAATGCCATTTAATGTAGCTAAAAAAATACTTGAATGTATtaatataaaatctttttttgactAGCTTTAGTTATCTGATTATGCAATCAAATTAATCATGTGGAATTATTaatcacttaaataaataaaaaatcacatatt

Function

symbol description
zgc:154075 Predicted to enable oxidoreductase activity.

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005575 cellular_component cellular_component
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-910 Predicted to enable oxidoreductase activity.

Ensembl:

ensembl_id ENSDARG00000067630

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042955 True 1821 mRNA 0.42 14 20803270 20814484

Neighbor

gene id symbol gene type direction distance location
XLOC_021641 ttc34 coding upstream 2312 20795781 ~ 20800958 (+)
XLOC_021640 si:ch211-112c15.8 coding upstream 22599 20771899 ~ 20780671 (+)
XLOC_021639 ccdc30 coding upstream 73115 20705849 ~ 20730155 (+)
XLOC_021638 usp21 coding upstream 101407 20687340 ~ 20701863 (+)
XLOC_021637 arhgef3l coding upstream 119184 20669149 ~ 20684086 (+)
XLOC_021643 pax7b coding downstream 48661 20863145 ~ 20936845 (+)
XLOC_021644 kcnab2b coding downstream 252905 21067389 ~ 21114732 (+)
XLOC_021645 si:dkey-201k7.1 coding downstream 366590 21181074 ~ 21183266 (+)
XLOC_021646 emc1 coding downstream 446829 21261313 ~ 21277522 (+)
XLOC_021647 ubr4 coding downstream 464464 21278948 ~ 21376847 (+)
XLOC_021632 CR352228.2 non-coding upstream 331400 20471755 ~ 20471870 (+)
XLOC_021628 NA non-coding upstream 441844 20345310 ~ 20361426 (+)
XLOC_021627 AL953864.1 non-coding upstream 615531 20187625 ~ 20187739 (+)
XLOC_021614 NA non-coding upstream 1327119 19473396 ~ 19476151 (+)
XLOC_021613 CR388168.1 non-coding upstream 1584330 19217528 ~ 19218940 (+)
XLOC_021651 NA non-coding downstream 658618 21473102 ~ 21474482 (+)
XLOC_021656 CR847529.1 non-coding downstream 809251 21623735 ~ 21623849 (+)
XLOC_021659 CR548634.2 non-coding downstream 967093 21781577 ~ 21783450 (+)
XLOC_021660 NA non-coding downstream 1091569 21906053 ~ 21914926 (+)
XLOC_021666 NA non-coding downstream 1757674 22572158 ~ 22593289 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_06541966_06547403 NA coding CI01000001 null 6541966 ~ 6547745 (+)