XLOC_021640 (si:ch211-112c15.8)


Basic Information

Item Value
gene id XLOC_021640
gene name si:ch211-112c15.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 20771899 ~ 20780671 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042953
TCTTACATTAAAGCTTTCTGGTTTGGTTACTCACCTTCCTGTATGAGCAGATACACAGACTGAGTGAGACAGAAGGTGGATGAAATCAAAGCTGACATGAAGCAGAGCTGGAAAAATTCATCTTTTCATCCATTTGTAAGTCTATGAGTTCTAATTTGATTGTTACCTGTCATTTACGAGCTGAAACGGAACATCTTCGCAGCATGATACTGTCAACACTGTTTCTGGATTTGGTCTTTATACAATTTATAGCCTCCCAAAGTATACGTACTAACTTGACAGATGGAAAGTGTACAGCAGGATTTTACAAAAGTGGTCAGGAATGCATTAGTTGTGAGAGTGGATACTACATGGACAGCACAAACATGCATGACAAATGTTTACCATGCATAACTTGTGATGagccagCTCATGAAGTGGAAGAGAAAAAATGCACATCAACGCAGAACAGGGTCTGCGTCTGTAAATCGGAGTTTATCAGAGTTGATCGTTTCTGTAAACCTAACCCAAACTTCACCGTATCTTTGAACCCGCAAACAACTATTGGAACCTCACCAGTAGTTTGTGGAAGTGGCTTTTTTCGGGATGGTAGAGAATGCAAAAGCTGTTTTAAGGTCAAATGCAAAAACGAGTCCTGTAAATCGTTTTGCTCCTCCATTAATAAAGAAGGTTTATCTGACACTCTGTTGCTGGTGTTTTTGATGATTGTGGCTTTTTTGGGTAGTCTCTTTCTCATCTGGTTCGGTAGACGCTTTTGCAGGAAAACCAAAAATTGTCCAAACTCTCAAAATCGATCAGATCAACCCAATGATGTAATCAACATTCACATACCAatgGGAAGAAATGTCTCAGCCCGTTATGAAACCACTATCAAAAGCTTACCCGGGACCAGCTACCCACACAACATCACGAGTGGAGATATACAGAGCATCATGACCCCCCTGATAGCACAAGGAAACCCAAAATTGATGCAGGTTTTGCAGAAGGAGTCGTGGCCGGCACCTGTACTCTACACTGTCATTAGAGAGATTCCCGTGTTGCGCTGGAAAGAGTTTCTGCGGCTGCTTTCTGTGTCGGATGATCAGATGGAGCGGATCGAACTGGAGGCAGGCCCGTCCTATCTGGAAAAGCAGTACCTGATGCTACGTCTGTGGAGTCAGAGCAGCGGAGCCAAAATGGAGAACATCTATTCGACATTACACTACATGAACCTGTCAGGCTGCGCACAAGAACTGCAAGAAAAGCTGGAGCAACTGCAAGTGTAAAAGCTGCCTCATCTTGACTCCATCTTTAGGAGTGTAAGATGCAGCACAGATGGATATCACAACCTTCTGTATGTTTAGCAGGAAACGCGTTGTTTTTCCACTGATAGTTACAACCAAAAGCTGCACAATGtggcatcactatttttgttttgGTAGCTACACACTGCACACCTAAAATAATGCACTAGCGTAGTTTAAGATaagttttcatatttttttgatGTGTTGTTTACTAAATATTTCAGTAAAAACCATCTTTATTTTAAACCATACTAGTCTTAATACCAGCGTTCTTTTTAAGCTCATCATCACATAGTTGTTGATTATAAACCTCATTTTCAGTCACATGAAATGGCTTTGTGTCATAGTACTGTACAAGTGTTTACTTTTAAAGGTAATTCACAAatttgaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

symbol description
si:ch211-112c15.8 Predicted to enable tumor necrosis factor binding activity and tumor necrosis factor-activated receptor activity. Predicted to be involved in inflammatory response. Predicted to act upstream of or within apoptotic process and signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in membrane raft and mitochondrion. Human ortholog(s) of this gene implicated in several diseases, including IgA glomerulonephritis; acne; allergic bronchopulmonary aspergillosis; autoimmune disease (multiple); and autosomal dominant familial periodic fever. Orthologous to several human genes including TNFRSF1A (TNF receptor superfamily member 1A).

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0007165 signal transduction biological_process
GO:0045121 membrane raft cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043235 receptor complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0043120 tumor necrosis factor binding molecular_function
GO:0005031 tumor necrosis factor-activated receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141211-78 Predicted to enable tumor necrosis factor binding activity and tumor necrosis factor-activated receptor activity. Predicted to be involved in inflammatory response. Predicted to act upstream of or within apoptotic process and signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in membrane raft and mitochondrion. Human ortholog(s) of this gene implicated in several diseases, including IgA glomerulonephritis; acne; allergic bronchopulmonary aspergillosis; autoimmune disease (multiple); and autosomal dominant familial periodic fever. Orthologous to several human genes including TNFRSF1A (TNF receptor superfamily member 1A).

Ensembl:

ensembl_id ENSDARG00000089868

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042953 True 1712 mRNA 0.41 10 20771899 20780671

Neighbor

gene id symbol gene type direction distance location
XLOC_021639 ccdc30 coding upstream 41744 20705849 ~ 20730155 (+)
XLOC_021638 usp21 coding upstream 70036 20687340 ~ 20701863 (+)
XLOC_021637 arhgef3l coding upstream 87813 20669149 ~ 20684086 (+)
XLOC_021636 uba1 coding upstream 107278 20640484 ~ 20664621 (+)
XLOC_021635 camkvl coding upstream 135159 20563779 ~ 20636740 (+)
XLOC_021641 ttc34 coding downstream 15110 20795781 ~ 20800958 (+)
XLOC_021642 zgc:154075 coding downstream 22599 20803270 ~ 20814484 (+)
XLOC_021643 pax7b coding downstream 82474 20863145 ~ 20936845 (+)
XLOC_021644 kcnab2b coding downstream 286718 21067389 ~ 21114732 (+)
XLOC_021645 si:dkey-201k7.1 coding downstream 400403 21181074 ~ 21183266 (+)
XLOC_021632 CR352228.2 non-coding upstream 300029 20471755 ~ 20471870 (+)
XLOC_021628 NA non-coding upstream 410473 20345310 ~ 20361426 (+)
XLOC_021627 AL953864.1 non-coding upstream 584160 20187625 ~ 20187739 (+)
XLOC_021614 NA non-coding upstream 1295748 19473396 ~ 19476151 (+)
XLOC_021613 CR388168.1 non-coding upstream 1552959 19217528 ~ 19218940 (+)
XLOC_021651 NA non-coding downstream 692431 21473102 ~ 21474482 (+)
XLOC_021656 CR847529.1 non-coding downstream 843064 21623735 ~ 21623849 (+)
XLOC_021659 CR548634.2 non-coding downstream 1000906 21781577 ~ 21783450 (+)
XLOC_021660 NA non-coding downstream 1125382 21906053 ~ 21914926 (+)
XLOC_021666 NA non-coding downstream 1791487 22572158 ~ 22593289 (+)

Expression


Co-expression Network