RNA id: TCONS_00042968


Basic Information

Item Value
RNA id TCONS_00042968
length 1500
RNA type mRNA
GC content 0.53
exon number 10
gene id XLOC_021648
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 21380079 ~ 21417936 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGATTTACCTCGTCGTTTTCCAGACCCGGTTCTCAACCCGATGCTGTTCACTGAATCCCCAGTGCCTCTCGGTATAAATGAAGCGTGCGCGGTCGGGAGCGGGTCTGGTCCCACGGCAACCAGCGCGTTGAGGAACGATTTGGGCTCCAACATTCATGTGTTAAAAACACTGAATCTCCGCTTCCGCTGCTTCCTTTCCAAAGTCCACGAATTGGAGCGCAGGAATAAGTTATTAGAGATCCAGCTGCAGCACGCCCAGGAGCAAGCCCGGTACCGACAGCTGTTTTCCCGGGAGCAGGCGGTCCAAACGAACCTCGAACAACTCCCCGGTAAAATCTGGAGCTTCTCGCACACCGCCAGGTACGGAGGGCGGTTCGAGACTCGCCAGGGGCCCGGAGTGTCCTGGACTCACCCTGACGGTGTCGGGGTTCAGATTGACACCATCACACCTGAACTCAGGGCCTTGTACAATGTTTTGGCCAAAGTCAAGCGCGAGAGAGACGAGTACAGGAGAAAATGGGAGGAAGAGGTTTCCAAACGTCAGCAGATGGAGTCTCTGGTGGAGACTTTACAGGAGACTGTTCAGTCGTCTGAAGTGGCACAAGGAGAACTGAATGAGAAGGTTGAGCGTCTTAAAACAGAGCTGGTGGTCTTCAAGAGCCTCATGCCTAATGATGTGATGTCTGACTTGGACAGTAAAATCCAGGAGAAAGCCATGAAGGTAGATATGGACATCTGCAGACGCATTGACATCACGGCCAAGCTGTGTGATGTGGCCCAGCAGAGAAACTCGGAGGACATGACTAAAATACTGCACGGCAGCTCATCCAGAGCTTCAGGGATGGTCGTATGCAGGAGAAAGGAGTGTAAGGGTGACTCAGAGGAGCAGAGAGTGGAGGCTGATGGTGATTGCACTCATCATGAGGAGGATGTGCCTGCTTCTCTCAACATCACTGATGAGATGAAGAGGATGCTCAACCAGCTGAGGGAAACATTTGAGTTCGATGATGACTGTGACAGCCTGGCGTGGGAAGAGACTGAGGAAACGCTTTTGCTCTGGGAGGATTTCAGTCACTACAACAGTCTGAACTCTAACACCACCAGCGctcacaccaccaccacctccacCGCCGCAGATCGAAGTCTGGGGAGCCTCATACATGAAACAGAGTCTCTGTTTAAAACCAGAGAGCAGGAGTATCAGGACACAATCGGACAGATTGAGCTGGAACTGGCCACAGCCAAGAATGACATGAACAGACACCTGCATGAGTACATGGAGATGTGCAGTATGAAGAGAGGCCTGGATGTCCAGATGGAGACCTGCCGGAGGCTCATCCAAAGCACGGCCCCAACCGGCAGACAATCGCCCTCTCTCAGCTCTGTGGCCAGCAGTGATTCAGGAAACACTGATGACATTCAGGATGAGCTGGAGCCCGATGGATTGAAAGACGGAGAAAAAGACGGAGAAGTGGAAATGAATGGAGAAGTCAGATGA

Function

GO:

id name namespace
GO:0005882 intermediate filament cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-342 Predicted to be located in intermediate filament. Orthologous to human IFFO2 (intermediate filament family orphan 2).

Ensembl:

ensembl_id ENSDART00000089379

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042967 lncRNA upstream 6147 21371236 ~ 21373932 (+) True XLOC_021647
TCONS_00042966 lncRNA upstream 12858 21364074 ~ 21367221 (+) False XLOC_021647
TCONS_00042963 lncRNA upstream 102557 21261390 ~ 21277522 (+) True XLOC_021646
TCONS_00042949 lncRNA upstream 686931 20687391 ~ 20693148 (+) False XLOC_021638
TCONS_00042950 lncRNA upstream 686934 20687459 ~ 20693145 (+) False XLOC_021638
TCONS_00044814 lncRNA downstream 55166 21473102 ~ 21474478 (+) False XLOC_021651
TCONS_00042978 lncRNA downstream 55170 21473106 ~ 21474482 (+) True XLOC_021651
TCONS_00042989 lncRNA downstream 363641 21781577 ~ 21783450 (+) True XLOC_021659
TCONS_00044671 lncRNA downstream 488117 21906053 ~ 21914926 (+) False XLOC_021660
TCONS_00044815 lncRNA downstream 488123 21906059 ~ 21909458 (+) True XLOC_021660
TCONS_00042965 mRNA upstream 3232 21278991 ~ 21376847 (+) False XLOC_021647
TCONS_00042964 mRNA upstream 3712 21278948 ~ 21376367 (+) False XLOC_021647
TCONS_00042961 mRNA upstream 102946 21261313 ~ 21277133 (+) False XLOC_021646
TCONS_00042962 mRNA upstream 103648 21261342 ~ 21276431 (+) False XLOC_021646
TCONS_00042960 mRNA upstream 196813 21181074 ~ 21183266 (+) True XLOC_021645
TCONS_00042971 mRNA downstream 6811 21424747 ~ 21433332 (+) False XLOC_021649
TCONS_00042972 mRNA downstream 6811 21424747 ~ 21440054 (+) True XLOC_021649
TCONS_00042973 mRNA downstream 37216 21455152 ~ 21461077 (+) False XLOC_021650
TCONS_00042975 mRNA downstream 37216 21455152 ~ 21461134 (+) False XLOC_021650
TCONS_00042974 mRNA downstream 37216 21455152 ~ 21461134 (+) False XLOC_021650
TCONS_00042958 other upstream 265347 21067389 ~ 21114732 (+) False XLOC_021644
TCONS_00042937 other upstream 908209 20471755 ~ 20471870 (+) True XLOC_021632
TCONS_00042936 other upstream 909484 20448905 ~ 20470595 (+) True XLOC_021631
TCONS_00042927 other upstream 1192340 20187625 ~ 20187739 (+) True XLOC_021627
TCONS_00042922 other upstream 1558616 19813719 ~ 19821463 (+) False XLOC_021624
TCONS_00042986 other downstream 205799 21623735 ~ 21623849 (+) True XLOC_021656
TCONS_00043003 other downstream 1173122 22591058 ~ 22591155 (+) True XLOC_021666
TCONS_00043017 other downstream 1602773 23020709 ~ 23049140 (+) False XLOC_021673
TCONS_00043030 other downstream 2654093 24072029 ~ 24072110 (+) True XLOC_021680
TCONS_00043031 other downstream 2654224 24072160 ~ 24072245 (+) True XLOC_021681

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_06893068_06917387.mRNA False 1932 mRNA 0.49 13 CI01000001 6893068 ~ 6917408 (+)
bowfin (Amia calva) AMCG00002175 True 945 mRNA 0.58 8 CM030136.1 6200862 ~ 6207882 (+)