G16687


Basic Information

Item Value
gene id G16687
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6455569 ~ 6456382 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU18694
AAAAAGTTATGTGCAAGTTCCTGAACCCAACCCATACAGAAGCCAGAGAGGCAGAGGGATGTTCCCACTGGGCCTATGGGAGAGCAGGAGTTCAGTAAGTGGACCAACTCGCTCCAAGACCTTGGCCAAAAAGAGCATTTCAAGTTACATTTAAACGTGACATCAAGCCAAGGAAGCGATTTGAAAAAAAATTAAGCAAACATAACTGATATTTTTCCTTTGTACTCCATTTTTTGGCATTAGTCAATATTTTTCTCCAGAATACAAAGCAACATGGTGCTGCCCAGAAATGTATCATGAGGACAGAAACAGAGATCAGTGCGAAAAAGATGATTGAGAGGGAGGGAGTGACAATCGGTGTACAGATTAATTCATACACTGAAGCTGTGTTACAACAACCAGTTCAAATAAGTTACAGCCAAAGATTCACATGCTCCCCTGTGTCATCATTGCAGCAGAGCTCAAAAACTAGTGCTTTAACATGCTTCCCCAGTTTCTTCTTGGACACCTTGGTCACAATCTCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU18694 True 525 lncRNA 0.39 2 6455569 6456382

Neighbor

gene id symbol gene type direction distance location
CI01000001_06307614_06307988 TAF13, TAF13.S coding downstream 147216 6307404 ~ 6308353 (-)
CI01000001_06285353_06286524 NA coding downstream 169045 6283778 ~ 6286524 (-)
CI01000001_06275328_06282035 NA coding downstream 173534 6273801 ~ 6282035 (-)
CI01000001_06209325_06237504 LAMB2L coding downstream 218065 6209311 ~ 6237504 (-)
CI01000001_06167374_06195286 LAMB2 coding downstream 259343 6166681 ~ 6196226 (-)
CI01000001_06507334_06512409 ZNF362B, ZNF362 coding upstream 49791 6506173 ~ 6512409 (-)
CI01000001_06756063_06798700 MEGF6A coding upstream 299656 6756038 ~ 6799081 (-)
CI01000001_06804031_06824280 NA coding upstream 346494 6802876 ~ 6824280 (-)
CI01000001_06932075_06937182 NA coding upstream 475239 6931621 ~ 6937231 (-)
CI01000001_06945753_06946316 NA coding upstream 489371 6945753 ~ 6946365 (-)
G16706 NA non-coding downstream 24386 6424442 ~ 6431183 (-)
G16666 NA non-coding downstream 100646 6354573 ~ 6354923 (-)
G16665 NA non-coding downstream 102801 6350395 ~ 6352768 (-)
G16660 NA non-coding downstream 136889 6318274 ~ 6318680 (-)
G16631 NA non-coding downstream 149405 6293266 ~ 6306164 (-)
G16710 NA non-coding upstream 14937 6471319 ~ 6471610 (-)
G16711 NA non-coding upstream 16132 6472514 ~ 6472927 (-)
G16730 NA non-coding upstream 80340 6536722 ~ 6536952 (-)
G16740 NA non-coding upstream 92362 6548744 ~ 6548957 (-)
G16753 NA non-coding upstream 126672 6583054 ~ 6615589 (-)
G16664 NA other downstream 107614 6344104 ~ 6347955 (-)
G16462 NA other downstream 1225984 5222777 ~ 5229585 (-)
G16332 NA other downstream 1497727 4950689 ~ 4957842 (-)
G15736 NA other downstream 1654174 4800901 ~ 4801395 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other downstream 1727362 4725927 ~ 4728210 (-)
G17789 NA other upstream 381143 6837525 ~ 6890414 (-)
G17911 NA other upstream 794929 7251311 ~ 7267952 (-)
G18023 NA other upstream 1300119 7756501 ~ 7757520 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G157022 NA non-coding NC_056721.1 CM032090.1 12173386 ~ 12174187 (-)