G16706


Basic Information

Item Value
gene id G16706
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6424442 ~ 6431183 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU18717
TGGTTTGATCTGAATTTTATTGAAATATTTGTGTAGAGAGTGCAAAAAATAACTTGGAAGAATATTCACATCACCAAAAACTATATAATATTTGGGGAGGTGGAAGCCACAGTTACAGTTCACAAACATTTGCGAGGAATTACATATAGACATTAGAGCTTACTTTAGGATATATTAGCAAAAGTACTATACAATGTAAAGATATACTAGTAGGCATCATAAATTGGGAAAGAGAGTGAGAGAATGAGAATTAAACAAACATGTATATGGACACATACAACAGCAAATAAATAAATAAATAAATAATAAAAAAAGGCCAGGAAAGAGAATATAGCTGTAAAGTAGTCTCAAAGTTATGATCGATTATCGCACTCTGAGCATTATTATTCTCAATCAATGAAAGACTGTCATGTTTGGCAGAGACTTATAGAAACTACTGTACAATGTGAGAATATACAATAAGAATGATAAATGAACTAGTCTTATTGGAAATACTACAGAAGGTAAATGATTGATGAGAGTACACAGATGCACTGCTTCAACTTCACTATCTCAGAGCAAAAATCCAAGATGGATGAAGTGACAAAAATCATAACACCCTCCAAAGTTCGTACCTGGTGAAGAGCAAATGCACAGCGGTTCTCCAAAACAGAGCAGGATGCCAACTTGTTTTAAGGGAACAAGTTTCATTAAAGGTGATTTTTTTTTCATATAAACTTTTGTATCCAAACTCTCCACAGATTCTACATTACAATTATGAAATTGTTATTTAGGAAACATATTAGTGTTTGCTATAATCTGGTAGTGTAAGAGCAGAACCATTTACAAGTGGGATAACCTTAACTGTTTCCTCTAATAATACAAAATGCTCAGTTCCTTTCCTCTTTACACATTAAAAAAAAGCTTCTTATCCATAACATACAATCAAAAACAAGGCTCTTTTGCATTTAAGCTCCAAAGACCATTGTACAGCCCCAAAAGGTATGCTTTACTCATGGATCCATAATCTATATCCCAAAGATTTTTTGTTACATGGTGCACCTACTTTATTCTTGAGCATTCACATCCTCTTAGCATATTTACAAGCCTTTTCCTGACACACTTCCCCTTGGTGATTGGCCAGACTGCTTTGCAGACTTCTGGCCATCGCTGTTACCCTCGTCAGCAGTTGGATGGCTGTGACCCTGGATGTGACTGGGAGGGGAAGGTGGTGGGTATGAAGGAGGCGGGATGGTCAGGTGTGGTAGAGAAGGCATTGCTGGGCGAGGTGTGGTGGGAAGGGGTGGCGGGGTTGAATGATGGTACGAGCGAGGTCGGGGTGATGGGGAAGAGCTGGCGCTTTTTGCTCTCGGAAGGGTCTCAGGATGATCGCTGATCTGCTCCAGCAAAGAAGGCATGTCCCCCTCGATCTTCTCTAGCACGGCAGCCATTTGCTTCTCAATTTGTTCGATTACACAATCCATTTGCCAGTCTGCGCTGGCTCCACTTCCTGGCTCTAGACCACTGTACTGTCCGACAGAGTAGGTTGGACAGTATGTGCTCCCGTACCCTGATGCACCATGGACCATCTCCTGGAGCTCCTGCTCAAATACCGTTTTATCATGGCCGAGACTTGAAGATCTCAATCCCGAATACGTACACTGGATGTTTTTCACTGATTGGCTCCCCTTGTCCGGTCGTCCTTTCTTCAACTCTCTGCTCTTGGGGTTGACCTCGCAAGTCGCCCCAACTTCTGCTGGCCTCTCTGCAACTGCTTCTGGGAGCTGTGTTTGACACCAGCTGCTTGCGGCCATATCGTGGACTGTGTCTTTCTTGTTTTCTGGTTGAAGAGGTGTTTCTTTTCCCACTGACAAGGTTCCGATTTTGGCATCTGAACATGAGGCATGATCCATTGAGAGATTGGCGGCAATCTTGCGTCGATTTGGAGTATCAGGGAGAGGTGATTTCTTCTCAACATTGCCAACAGTTGTGGCCTCCTGCTCTGTGGGGATGTTGTTCTCTCGGCTGTCTGAGGTCTTGATGGGCTGGATGGGTGCTGCTTTCTGGCTCGCTCCTGTTGATGATTTGTCTTCCATTTCAGAAGTGCTTTCGGTAGTCTCTCGCTTGTTCGGCTCCTCTGCTTGTACTTTTAAAGAGCTGTTTGATTGGGCAAGGGTCTCTGCCTTTTTCTCTTCTACTTTTATATGTCCTGCTTTCTCCTCTTCTTGATTCTTCATGGGTCTACTTTCGACGGACACCTCGTGGGACACGCTCATATTAGAAACGCCACCTGAGTCTGTTTGTATCCCCTTACCATCTAATCCATCTGCGTTGACCCTTTCTGCCTGGCCTTCTACTGCACTATCAGACGATCCAAGTTCAGAGGCTCTGAGGCGCTGCATGAATGTGGTGTCCCGCAGGGTTCAGTGATTGAGCCGTTCTCAAACCTGGACAGGTAGAAGTCCCGCAACACGACTTTGTTGTGGTTACTCTCTCTATAGTACATCAAGTTCTCCAGCTGAAATGACAGAAAAGGCAGAGAGGGTAAAGAACAAAAAAA

Function

NR:

description
hypoxia-inducible factor 1-alpha-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU18717 True 2539 lncRNA 0.43 2 6424442 6431183

Neighbor

gene id symbol gene type direction distance location
CI01000001_06307614_06307988 TAF13, TAF13.S coding downstream 116089 6307404 ~ 6308353 (-)
CI01000001_06285353_06286524 NA coding downstream 137918 6283778 ~ 6286524 (-)
CI01000001_06275328_06282035 NA coding downstream 142407 6273801 ~ 6282035 (-)
CI01000001_06209325_06237504 LAMB2L coding downstream 186938 6209311 ~ 6237504 (-)
CI01000001_06167374_06195286 LAMB2 coding downstream 228216 6166681 ~ 6196226 (-)
CI01000001_06507334_06512409 ZNF362B, ZNF362 coding upstream 74990 6506173 ~ 6512409 (-)
CI01000001_06756063_06798700 MEGF6A coding upstream 324855 6756038 ~ 6799081 (-)
CI01000001_06804031_06824280 NA coding upstream 371693 6802876 ~ 6824280 (-)
CI01000001_06932075_06937182 NA coding upstream 500438 6931621 ~ 6937231 (-)
CI01000001_06945753_06946316 NA coding upstream 514570 6945753 ~ 6946365 (-)
G16666 NA non-coding downstream 69519 6354573 ~ 6354923 (-)
G16665 NA non-coding downstream 71674 6350395 ~ 6352768 (-)
G16660 NA non-coding downstream 105762 6318274 ~ 6318680 (-)
G16631 NA non-coding downstream 118278 6293266 ~ 6306164 (-)
G16656 NA non-coding downstream 135450 6288787 ~ 6288992 (-)
G16687 NA non-coding upstream 24386 6455569 ~ 6456382 (-)
G16710 NA non-coding upstream 40136 6471319 ~ 6471610 (-)
G16711 NA non-coding upstream 41331 6472514 ~ 6472927 (-)
G16730 NA non-coding upstream 105539 6536722 ~ 6536952 (-)
G16740 NA non-coding upstream 117561 6548744 ~ 6548957 (-)
G16664 NA other downstream 76487 6344104 ~ 6347955 (-)
G16462 NA other downstream 1194857 5222777 ~ 5229585 (-)
G16332 NA other downstream 1466600 4950689 ~ 4957842 (-)
G15736 NA other downstream 1623047 4800901 ~ 4801395 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF other downstream 1696235 4725927 ~ 4728210 (-)
G16753 NA other upstream 153297 6583054 ~ 6615589 (-)
G17789 NA other upstream 406342 6837525 ~ 6890414 (-)
G17911 NA other upstream 820128 7251311 ~ 7267952 (-)
G18023 NA other upstream 1325318 7756501 ~ 7757520 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021635 camkvl coding NC_007134.7 CM002907.2 20563779 ~ 20636740 (+)
tiger barb (Puntius tetrazona) G157035 LOC107737586,LOC107672037,LOC107712704 non-coding NC_056721.1 CM032090.1 12151360 ~ 12156300 (-)