G17355 (LOC107653472)


Basic Information

Item Value
gene id G17355
gene name LOC107653472
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 5561906 ~ 5565965 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU25917
catcatcatttttattttatagtataaaaaCACGGCTGCACACATACACCACAATACGGTGACAGTGGAATTATGCCCtagcataaaaaatgtataaaaaatactctatttattttgaaaccTGTTTGATTTCCAGAAGACACACTCATTGACCGCTCTCTCTAAACATGtgaataaaatgctaatttatgaAAACATCTGAATAGTTGATTTAAGCTTGATTTTATACCAATATCAAATCATAAATCATGACTTTCTGCTTCAGTTTTATTAAAGCAGAAAAATCtgagttacattaaaaatggtcCTGGCTTCTCCAAGTGTTACGGGTGCGTGTATCAGTCGAACAGTCCAAcccatattaaaataaagcgaGTGCATCTATAATAAAACGTGCCTCACGTAGCTCTGGAGGTGAATGAAGGCCTACTGTAGTGAATCAGGCGTTTTTTGTAAGATAACCATACTTTAACTGTAAACACCGTTCTCTCAATTCTGCTGGCTGTCATATGATGGAGATGTGTTAGTCTCACGAGTCTCTTCACAGGAGCAAAGGAAGCAAACCAGCGTCAAAACCCTAGAACagttttctttacaaatccttgGTTTGCGCTTCAGTGTTTCTCAACCCTGGTCCTGACACATTATGTACGTCTCCCTCATCTGAAAAACCCAATTCAGGTCCTGGAGTTTCTTCTAGCGAGCTCACGAGTTAAATCAGATGTGCCTAGGATTGGGAAAGACTGCTCTAATTCACGAACAtcattctgttttcttttctctccatGTTTGTCACCGATCACCCAACGTTGACGTCTTTTCGTGGGTATTACAGTCAGATAAATtgagagaaaaatgtttattacatttgaaatacggatatttttttttcacaaaaatgcatgcatttgctACAGGAGGCTTTTATTCATACCCTTGAAGTTTATTAGATGTAAGTGAGAACAGCGATTGAATTTGTCAACAAGAATGATGGATCCATCTGaaataatgatcaaataaaatgttatgtccAGCCGTAGCTCACTGACAAGCCAGTCAATTTCACACGCAGTGTTGTGGTGCATCTTCAATGCCTCCAGCTCAAGTCTTTAGCCACTCTGTGTAAACTGATGAAAAAGTCCGGGAACTGGTCAAAAATCTTCTTCTCCTCAAATTCCTTTCTGACATTTCTGTTAGAAACAAAACGATAGCGTGAATTCATTgccaagtcaaaaaaaaaagcattacagtcACCAATGCATCAGTATTTCACGACCTATTTCCATGTCGATGAAAGCCAGCTGGAATGagcaaaaaaggttttttttctctcactcacGCATGCACCAGTTTGTTGCGCAAAACGCGCAGCAGGCCAAGAATGTCTTCTGGGAGCTTTTTGTTAATGTCTGGCCATATTTCTGTGAgctgccaataaaaaaaaaatactatgtttATGCACAGACTGTTAGCAGTTCTAACACGCCACTGAATGTTTCGTGTTTGGGTGTTTTACACTTTAACTCACCTGTGATTTCCAATTAGAAAAGCTTTTTCCTCTCGTGACCTCGTCTGCTGTGTTGAAGAGCTTCCAAAGATACTTTAAATCCACACCAACTATATTAAGGATGTCGTTTCTCCTAGAAGACAGAAACGAGCAAGCGATGCCATGCACACGATCCATATTTCATGCAAACTGTTATGCAAAtatcatttgttcatttaaatacgaagagtttatttgcaaaaatcatgtttttcatgtCATCGTGTTTTTTAACCTAGTCAAAACATCCCAACTACAGtctgattgagattaattggaatgcacaatgatgatttttgagaattttaaaaaacgttATCTTCTAAAAAGAGTTATCTTCTTTCGCAAATGAACTCTTTATATGCACTATTGGTCAAagttcagaaataataataataataataattcttataaGTCTTTTCTGATCACCAGGGTTGCTGCATTTGATAACTGTAATAGTGTGAATATTTGTCAACttttaataactgttttctattttgatatattttaaaaacgatatttattccagtgatgcaACGCtaaattactccagtctttagagTCACAGAAATCAACCTTCAGATGTTATTCTAAtgagctgatttgctgctcaaggtTTGTGGAATTCCTGATGCATTTCGttttgattgtttaaaaaacagaaatcttttaaatgtttgaaataaaaatcttttgcgatattataaatgtttttactgtcacttttagtcgatttaatgcatccttgttggATCCAAGTCTTAGGTCTTACCACAACATTTTAATGGTGTTTTATCaatgtttctataaaaatattaagcacagTGGTTTTTAATGTTGATAATAACTAATGTTTCTTAAGCAAGCAAATCAGAAtgcttctgaaggatcatgtgacactgatgactgaaataatgatgctaaaacatcataatgtaaaaacatttcacaatattactgtttttgttatatttgacCAAATGAGTGAAGCCAAAAGTGACTTCTTTCAGTAACTTACTTCTTTTCACTCTCTATTTTCAGTTCACCAAAGGCCTCATGAATGGTCAGTGTTCCTGCTGGGTCCGTTCCCTCTCTGTGCCCTTTTTCTTTGTAGAGTTTGTGAAGTTTTGCTAAAGTCTCATAGTTCTGGATTTCAGGCATGTCACCCAGCTTTCGAAGGACAGCATCTTTGCTGAAGGATATGAAAAAGTGCATTGGGCAGGTCATTCATCACAAGAGCGAACGTTCAGAAAGTGCACGTTTAACCCAGCATACGCTACATGCATGTTTCCGTGAAGTACGCTGCCGTGATAGTTCAATGAAAAATActattctgtcaccatttactcactTTCGTAATCTTTCAATCCGtaaagactttctttttttaatagaagaTGGTAATATTGAATATACCGGCACACATTATAATGGACCGAAACGCCGACCTAAAGAGTCCAAAATCTAGAAACAAGATCCTGGCAGAGACTCAGAGGAAAGTCAAGAGTTATCTCAGGCAAGAACAGCATCGGAAGAACTGGAAATAAACAGAAGAAGCTATCTCAAGCAAGCAAGATGAAAGGAGATTGTGTGTAAAGAAGTGCTCTTAGAAGCAGTCGTAATCAAGAACTgtaaaatgttcctttaaggCCCCGATATACTTCAAACAAACGTCTTTTTCATTCTTCGTTTGAGGGCAAAAAGAGAAGTTAGAAAAGGCTGATGGTAAACTGAATATTCTGAACAAACTCCAAAAGGTTTGCTCTGGTGAGCCGATTCGAACTCCAAAATAAACCGCCTGATTTTATTCGAAATGGCGTCGTTTCAGTTCGTTCTTTGATTTCGTTTGAAGTATATGGAGGCCTTTAGGGAGATTAATCAGATACATACTAGATTCACAGTGATAAAAACgtctattaaatataatttcttattcACCTGTCATCATCCCAGAAATAAGGATGTCGTAGGACCTCGTCAATGGTCAGTCTCTCTGATGGGTCTTTGTTGATCATCCATTCTATGAGATCCTTTGCTACTATATCTTGTAAACCTTCAAGAGAGTGCAGCCCTTTCTTGATGTTCTCCTCGCGATCCTTTGCGTCCTTTGTGTCCTTTGCGTCAAAGGGATGTTTCCCACCAGAGAGGATGTAGTACACCAACATCCCAGCAACCTGGAATAAACAGAGCAGACCGTGAAACTCAACAGTTTCAGAGCTcaaagtcttttatttattctacCTAAAAGAGAAGGCTGGTCCAGACCGGGCTAAAACACGCTCTCTGTCCAGATGCGGTAATATTTGGATAATGCAGATACAAACGAGCGCTGTGTCTGTCACATGACTCTGGTCCTCCTTCGAGTTTGAACTGAAGCTCGTGAGTTT

Function

NR:

description
PREDICTED: probable serine/threonine-protein kinase ireA isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU25917 True 3933 lncRNA 0.31 2 5561906 5565965

Neighbor

gene id symbol gene type direction distance location
zgc:63569 slc44a2,LOC107653473,LOC107659566,LOC107550258 coding downstream 10824 5534145 ~ 5551082 (-)
LOC122341970 rgl3,LOC107659568,LOC107718589,LOC107550259,LOC107653475,LOC107711125,LOC107563227 coding downstream 30603 5515549 ~ 5531303 (-)
LOC122334247 LOC107576129,LOC107550232 coding downstream 164040 5388396 ~ 5397866 (-)
tlcd4b tmem56b,LOC107661664,LOC107695723,LOC107715658,LOC107718582,LOC107550253 coding downstream 216530 5327851 ~ 5345376 (-)
cnn1b cnn1b,cnn1,LOC107715638,LOC107718633 coding downstream 234194 5313977 ~ 5327712 (-)
syce2 LOC107659571,LOC107550240,LOC107563245,LOC107653470 coding upstream 15056 5581021 ~ 5588600 (-)
farsa farsa coding upstream 26427 5592392 ~ 5598932 (-)
ilf3b ilf3,LOC107659573,LOC107550263,LOC107653468 coding upstream 33455 5599420 ~ 5615448 (-)
LOC122333799 NA coding upstream 78061 5644026 ~ 5650545 (-)
LOC122341448 LOC107550264,LOC107659563,LOC107718634,LOC107563254,LOC107653452,LOC107731471 coding upstream 169303 5735268 ~ 5741169 (-)
G17363 NA non-coding downstream 698 5558702 ~ 5561208 (-)
G17266 LOC107659565,LOC107550255,LOC107711126,LOC107718587,LOC107563256,LOC107656794 non-coding downstream 77756 5421009 ~ 5484150 (-)
G17268 NA non-coding downstream 87132 5415777 ~ 5474774 (-)
G17273 NA non-coding downstream 92830 5409686 ~ 5469076 (-)
G17274 NA non-coding downstream 93243 5409059 ~ 5468663 (-)
G17364 NA non-coding upstream 3479 5569444 ~ 5570269 (-)
G17367 NA non-coding upstream 7827 5573792 ~ 5574354 (-)
G17353 NA non-coding upstream 8666 5574631 ~ 5576063 (-)
LOC122341476 NA non-coding upstream 129025 5694990 ~ 5717058 (-)
G17458 LOC107661858,LOC107653464,LOC107718599,LOC107718623,LOC107753757,LOC107565613 non-coding upstream 361819 5927784 ~ 5928871 (-)
plppr2a plppr2a,LOC107715659,LOC107550254,LOC107695724,LOC107718583,LOC107661668,LOC108440982,LOC108274416 other downstream 173685 5346551 ~ 5388221 (-)
LOC122342176 nfia,nfixb,LOC107592693,LOC107599440,LOC107715650 other downstream 674740 4843954 ~ 4887166 (-)
G17167 ep300,LOC107695656,LOC106511457 other downstream 882123 4678584 ~ 4679783 (-)
LOC122341034 NA other downstream 911264 4602551 ~ 4650642 (-)
G17133 trap1,LOC107573746 other downstream 1108771 4450315 ~ 4453135 (-)
G17357 LOC107731470,LOC107659573,LOC107550263 other upstream 165407 5731372 ~ 5734483 (-)
G17457 jmjd8 other upstream 366929 5932894 ~ 6084545 (-)
G17468 si:dkey-117i10.1,LOC107753760,LOC107565612,LOC107661874 other upstream 388183 5954148 ~ 6105990 (-)
LOC122333912 LOC107565605,LOC107653436,LOC107693566,LOC107599328,LOC107660297,LOC107673775,LOC107693569,LOC107693570,LOC107572241 other upstream 750300 6316265 ~ 6343668 (-)
LOC122333927 LOC107599328,LOC107661850,LOC107602703,LOC107711190,LOC107599331,LOC107693566,LOC107722885,LOC107565605,LOC107673775,LOC107563216,LOC107599329,LOC107653436 other upstream 828082 6394047 ~ 6424285 (-)

Expression


Co-expression Network