LOC122341954


Basic Information

Item Value
gene id LOC122341954
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 17007395 ~ 17019304 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU30917
CGCGCCCGCACGTGCGCGGTTTTACATACCGCCGCCCATTGACGATCATTAATAGACCGGAGAACGTCGGCGAGGAATTTAGCGCACAATTTGGCGCGTGTTGCTGGGATCGGCATCTCCCCCTGCGCGGCCCCTCACCTAGCAGCGTGACCGCGAAGCGACGCGCGAGCAGAGAGATCTTAACATGCACGGAGTCAGTCCGCTGCTCATCTCACCAGCGGCGGCAGCACGTACGGCGCGCACTTAAAGAAACAACATCTGACTCGCACCGGCCACATGTTTCCTTCAACCCCGCGGCGCGTCTTTATTCGCTCGAGcttcCAGCAACCAGCTGCACTTCATGGCCATAGATAAAGAAAACCCCATGCGCAAGGAGTTAATAAGTCAAACAAGTAAGAGCATTGTCTACAATTTCAAGATGCTCTCGGAGGAAGTAAACAAGCAGAAATGCAGACGTGAAATTAAGAACCCTCTTCTTTACCCCCGTCCATGTGACAGCAGAGGCATATGACTTCCATAACTTCATTGCTCATTAACCGCTGATGCTAGGACACAATTGAGCGAGTGTTTGTGGAACTTACCCTAGATATTCAGATCTCAGTCCTTGGCTCTGGCTGTTGGGCAGATCTTCTCCTGTTTCAGATATCTTCACCCTGCCTGACAACAGACCGTGAGGACGCTCACATGAGAGCCCCTTGTGAGGAGTGAACTATGGGATACAAAGACCGGTTATGTCCATTTAAATCACTTAACAAACACCACAGCAAACAAAGACCGTGATTTACCATGGTGGCGTTATTAAATTACCTCTGCACATGAGCCAACAATTGAGTTATTTTTATAGACGTGTGCAGACAGTATAAGCGCTGTCTTTTGTTCCTTATTGACTTGGCCCACCAGATTTTGTATGTTCTTGAATAGAGCTAGCACCGGTTAGACCAAAAATACGCATAGGAAATAGTCATAGCAAAGGTATCCTTCAAAAACCAAATACTCCCTTTTAGCTAGGTTGCGCACGAACGACTTTAGGCTAGTCATTGTCTGGGCTTGACTGGGATGGGAAATGGTTTAAAAAGCCAATGcgtttataaaatatgtaattgaaatgttgattacatttgttgtatgttttaaaatgacgcTGATAACTATCAAACAATAAAGTGAAAACGATTAAAAACC
>XR_006250505.1
TTGTGCTCGTGACGTACAGCGCGGAAGAAGAGCGATAtagaaaatacacacactctACGAAGCGAGCCATCAACGCAGTTTAGTGCAAATGAATTTAACTAACATGAcattccagtaaaaaaaaaaaaaaacactaaatgcatgGACACCACGACGAAAACGCTGTTTTGCCGACAAAACGGTGAAAAGCAGTCAACGGCCATAACCGACTTGGGGGTTTCTAAGAACGTCCCTTCCTAGTTTCTATATTTGGGAACGACTTCTAGGAAAATAGAAACTGCCAGCTCCGTATCCAGTTCCACGTGTTTAACTTCGCTCCCTTTTAAAGCGAAAGAAAAGCTTCGAGCAGCAGCGCGCCCGCACGTGCGCGGTTTTACATACCGCCGCCCATTGACGATCATTAATAGACCGGAGAACGTCGGCGAGGAATTTAGCGCACAATTTGGCGCGTGTTGCTGGGATCGGCATCTCCCCCTGCGCGGCCCCTCACCTAGCAGCGTGACCGCGAAGCGACGCGCGAGCAGAGAGATCTTAACATGCACGGAGTCAGTCCGCTGCTCATCTCACCAGCGGCGGCAGCACGTACGGCGCGCACTTAAAGAAACAACATCTGACTCGCACCGGCCACATGTTTCCTTCAACCCCGCGGCGCGTCTTTATTCGCTCGAGcttcCAGCAACCAGCTGCACTTCATGGCCATAGATAAAGAAAACCCCATGCGCAAGGAGTTAATAAGTCAAACAAGTAAGAGCATTGTCTACAATTTCAAGATGCTCTCGGAGGAAGTAAACAAGCAGAAATGCAGACGTGAAATTAAGAACCCTCTTCTTTACCCCCGTCCATGTGACAGCAGAGGCATATGACTTCCATAACTTCATTGCTCATTAACCGCTGATGCTAGGACACAATTGAGCGAGTGTTTGTGGAACTTACCCTAGATATTCAGATCTCAGTCCTTGGCTCTGGCTGTTGGGCAGATCTTCTCCTGTTTCAGATATCTTCACCCTGCCTGACAACAGACCGTGAGGACGCTCACATGAGAGCCCCTTGTGAGGAGTGAACTATGGGATACAAAGACCGGTTATGTCCATTTAAATCACTTAACAAACACCACAGCAAACAAAGACCGTGATTTACCATGGTGGCGTTATTAAATTACCTCTGCACATGAGCCAACAATTGAGTTATTTTTATAGACGTGTGCAGACAGTATAAGCGCTGTCTTTTGTTCCTTATTGACTTGGCCCACCAGATTTTGTATGTTCTTGAATAGAGCTAGCACCGGTTAGACCAAAAATACGCATAGGAAATAGTCATAGCAAAGGTATCCTTCAAAAACCAAATACTCCCTTTTAGCTAGGTTGCGCACGAACGACTTTAGGCTAGTCATTGTCTGGGCTTGACTGGGATGGGAAATGGTTTAAAAAGCCAATGcgtttataaaatatgtaattgaaatgttgattacatttgttgtatgttttaaaatgacgcTGATAACTATCAAACAATAAAGTGAAAACGATTAAAAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU30917 False 1182 lncRNA 0.46 2 17007747 17019304
XR_006250505.1 True 1534 lncRNA 0.46 2 17007395 17019304

Neighbor

gene id symbol gene type direction distance location
trnat-cgu_1 NA coding upstream 1410 17005914 ~ 17005985 (+)
LOC122341973 NA coding upstream 71876 16934133 ~ 16935519 (+)
galr2b galr2b,LOC107674614,LOC107564701,LOC107753547,LOC107703387,LOC108433115,LOC107745605 coding upstream 104425 16895969 ~ 16902970 (+)
zfand2a zfand2a,LOC107703388,LOC107568938,LOC107674713,LOC107745591 coding upstream 125314 16876854 ~ 16882081 (+)
si:dkey-43p13.5 LOC107753516,LOC107581781,LOC107745606,LOC107674624,LOC107576997 coding upstream 237952 16756053 ~ 16769443 (+)
zc3h7a zc3h7a,LOC107727124,LOC107564690,LOC107674666,LOC107703382 coding downstream 5330 17024634 ~ 17037487 (+)
litaf litaf,LOC107727125,LOC107703380,LOC107674718 coding downstream 23745 17043049 ~ 17045292 (+)
LOC122341850 LOC107727127,LOC107674682,LOC107745580,LOC799265,LOC108433148,LOC105013234 coding downstream 70510 17089814 ~ 17097965 (+)
LOC122332748 NA coding downstream 362479 17381783 ~ 17384185 (+)
hs3st2 hs3st2,LOC107741797,LOC107550309,LOC107574133,LOC107703334,LOC107674621,LOC108433116 coding downstream 403984 17423288 ~ 17449492 (+)
G20744 NA non-coding upstream 220345 16786832 ~ 16787050 (+)
LOC122342129 NA non-coding upstream 410180 16596292 ~ 16597215 (+)
G20656 NA non-coding upstream 699377 16307798 ~ 16308018 (+)
G20647 NA non-coding upstream 714589 16292605 ~ 16292806 (+)
LOC122333245 NA non-coding upstream 1126726 15879468 ~ 15880669 (+)
G20797 snn,LOC107564698,LOC107703342 non-coding downstream 19887 17039191 ~ 17042404 (+)
G20801 NA non-coding downstream 38400 17057704 ~ 17062823 (+)
G20829 NA non-coding downstream 55318 17074622 ~ 17074824 (+)
G20830 NA non-coding downstream 56049 17075353 ~ 17075575 (+)
G20831 NA non-coding downstream 56484 17075788 ~ 17076174 (+)
micall2a micall2,micall2a,LOC107703317,LOC107745593,LOC107568921,LOC107674716 other upstream 222584 16770545 ~ 16784811 (+)
LOC122331507 psmg3,LOC107703392 other upstream 307913 16690703 ~ 16699482 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other upstream 799549 16179620 ~ 16207846 (+)
fscn1a fscn1a,LOC107703419,LOC107742378,LOC107581720,LOC107674660,LOC107720060 other upstream 1263201 15706936 ~ 15744194 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other upstream 1727282 15269800 ~ 15280113 (+)
nsmce1 nsmce1 other downstream 93744 17113048 ~ 17117041 (+)
LOC122341316 NA other downstream 118626 17137930 ~ 17200630 (+)
G20950 igfals,LOC107703367,LOC107719182,LOC107674637,LOC107565761,LOC107710645 other downstream 699878 17719182 ~ 17723423 (+)
mrtfbb LOC107725018,LOC107572174,LOC107703365,LOC107674669 other downstream 850873 17870177 ~ 17901491 (+)
polr3k polr3k,LOC107703329 other downstream 885280 17904584 ~ 17906643 (+)

Expression


Co-expression Network