G20908 (usp31,LOC107703377,LOC107550315,LOC107674671)


Basic Information

Item Value
gene id G20908
gene name usp31,LOC107703377,LOC107550315,LOC107674671
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 17503896 ~ 17516429 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU31064
ATGCAggtctatttttttaatcataattcaACCGCCAACTTACATTGGGGAGACAATGTTATGAATACAAATGATTCTTCAAAGAaatgcattctttaaaataataataaaaaaaaaacattcaaaataataaaaaaagtgcatacaCATAAAACgtacaaataaattaacaaaaaaagcatttgacgCAGTCTCATGCAACCAAACATTTACATGGTTTTCACTTTTTCTAACCAAATattattttcctcttttggTTGACCTAGACTGTtgttcatataataaaatgaaagccCAGTTTATTAGCCCACCAAAGCAGGTACCAGTTCGTGAACAATACTTGAAAACTGCTCTGGGCCGAAAGAAATCATTCAAGTCCAGTGTGTAAACCAAGAGAACGCATATTATACCATAAGACTGATACAGCTTCGTTATAATGATAAAATCATCCGTCCTATCCAAACGCTTGATAAGACCATGTCATATTAGCACTTGAGCCATTGAAAACATCCCATATGCAGTAAGACTATAAAGAGGGTAATAGCACTTCTCTGAATTCATGGTCCGAGAACTTCACAACTTAAAACatggaatgacatgaaaaacaaaGTGAATGTAGTGTTTAGTGTATCAGCATTGCAAGCGATGCGGGACTTGTGTGCACTGATTGAACGCTGACAGTAAAGTTACATAGCTGATATAATATACAACATTCCCTACAAACTACATGTGAAAGCATGAGCAGACCACATCACGCCAGCGAAATGTGAAAAACCAAAACAGGCTgcaactataaaaatataaaaagtaaatttatcACATGGAAACAGGGAGCTCTTACCTTAAAAAACAgcttatgaattaaaataatagttttaattattaaaaaaaaggacgAAAATACAACGCAGATTGCTAATTCTGGATTACATATGGTTAAAGCTAATAATTTATGTTCTCAtatcacaatatttaaaaacttaaaagttAGACAAGTGTgcaaaaaagcaagaaaatggAAACAATTCatgctgttttctttaaaaaataaaaattcagacATTAATAACCAGACTCCTCTTGTTTAGCAACAGTTACTTGCATAGTTAAGTGCATGCGTTAATGTTATCATGCAATACTGCTTTTTACAAATACTTTTTCAGTGCACACACAAAATGGGCCTGTCGCAAAAAATAAGAAGCGTGCTACACATTAGGTTCATTGTTGAATTATCTATTTTAAGATAAAGTGTGCTGAAAGAGATGGGTTTCTGAGACCGAAAAGGAGCATGAAAATGAGAACGGTTCAACGGTGGCGTCAGCAGCGCTtggattaatgttttaattacaggGCAGCAAGCTGAACAGCGGCCAACGTAATGACACTATTATGCAAATGTTACAATAATGACTTGCTTAACCTTACATTTCTCCTGTCATACATAACATTTTGTATTAGTCCAAATGAACTTGTCAGAGCTAAATCgagaagaaaatatatttaagtgaaGTCGATGGTGTTGACGAGTTTTCAATTGgatattaaatcacaaaaataaaaataaaaataaaaatatgaaacccATATTGTGGTGAGCCATTAATCCTGAAAATAAATTCTGATTTACATTGATTAAATGGTTTTATCGCTATTGCATATGCACAGTAtcgatatttaaaataattcgtTTCTATAACAGCAACATTATGTTCAACATGTTTCCCAAACACAGAAGGTCATATACCTGTTCCCCTACAAAGTGTTGAAAACTATTGCACTGGTTGTCCACAGATAAATATGGGAGATAAAAACCGTCGCGCAAGGGTTTAACCCCAGCTCGGAGCAAGCCAAATGAAAACCGCTCGTATATGTTGGCATCAGACTTGGCGGGCATGAAATGGTTCAAGTATGATTATGTGGCTTTTAAACgttcattataaaaacaaagatatacaaaacaaattcaTGCAGGGCTTACACGGCCTCTATTATTATCCAGATCACACAGCGTTTTGCTggaataaactaaatattgtgAGTTTAAAGATTGTCCTCCACTAATTTACCATTTGAAAGATCACATTCATTCAGCAACAATTCAGCTATCGGCCTGTAGTCGGCATTGTTGCGCATATTTCTAAGGGCAGTAATGCTACTGGAACACTTGTAACTGCTCTCgagtacaaaagaaaaaagtcgGGATAGGAGAGCAGGCTTTGAGAGGTACCAAAGAGATTGTTCCGACTCTGCCAAACCCCATCTACAAGTCTACAGACGCAAATTCAGCCAGGTTTCGTGATGTAACTCTTCTCAATCTCATGCTGTATCAGTGCCAGGGGAACACTGGACTGTAAATAGCACCAAGTGTAGATGTGGAGTGAATTGGTACAGTACTCCAAGGAATATCGCAAGAATCTAATTTCATCATAAGTGACTTGTCCAAATAAAAAGGTACGGTACCAAGTTAAAAATTATTGTACATAGTATCCATTACATCTAAGCATTATTCGagggagaaaaaatatatacaaagtGCTAAGTTAAAACATTCCTATTCAGAGTCGTGAACAGTAGTAGATTCATATACCATACCTTGCCAGAGGCAACGATTTGGTTCCATGGCAGGATAGAAAGGCGCTTTCTGATAATTGACATATTTTCTTTGAGAAAAGTAAAATACaggtatatactatatactttATATTCTTCTTAGGCACATCAAAAAATAGctgcattacagaaaataatggaACTGCTATTAAAATTTCATTGAGGCGTCTGTGTTGGCCGTGCAGAGGATTGCATGCTGGAAGAAAGCTTTTTAGAGGATGAGATCTTTTCAAGAGGCCTCTTCCCATTGATGGGAGACTGAAGGCTAGTCTCAGAATTGGAAGACTTGGACTTGCCTACTGGTAAGAGAGAGCGTTTGTTGGGGGTGGAGGTCTTTGATGACTCTTTCTCATTGGCAGCAGCCTTGCAGGAACGTGGCTCCGGAGAGACCTGCTGGGAAGAATTTCCCGAGCCTTCGCCCTCATCGGCATCAAGTCTGCACTGGCTGTTGGACTTGGCAGTCCTTTCGACAGCCTTCTTGGCGAGAATCGAGGCCTTGCCCAGATCGGCTGACCGCCGAGTCTCTTTCTGCCGAAGCGCACTCTTGAAGAACGAGAGTCCCTTGTCCTCGGATTTGCTGCTGCGCCGGAGGTCTCTCGAGGAGACGCTTGGGGAGCGCAGGCTGGTGACTGAGGAGCTACTGCTGGAGCTTCTCACTGGCCTCCTTTCAGGCCGGCTGGCCTCGGCAGTCTTGGGTTGGGATGTTCGAGGGGTGGCACTGACTCTGGACTTCTCTGCCAGGGGACTGGTATGCGCCAAGTCCTTGCTGGAGCCTCTCTCCACCAGCTTCTTCTTGCCAGACACAGAGTTCTTCTCAGCCACCGAGGAGCTCTTTTTGGATGTGGGTGATGGAGAGGCGGAGGACTGGGGTGTGGAAGTAAGGGACGGTTTCCCCTTCGTGCCTCCAGACTCCTGTGCCTGCAAAGACTCTTTCCTTCTAGAGGGCGTTCCTGAAGGTGTACCCTTGGTACTCTTGGGAGAATCGCTCTTCTCTTTTAGATTGGTCGCTTTGGTGCCCTTCACTTGAGGGCTGGAAGACACTTGGGATGATGGAGACTTGGTGACAGAAGAGGAGCTCTGGCGCTTCTTGGAGGACTTCTCTTGGTCGCTCTTGGTTTTGGTGGAGCTCTTCTTGCTGGAGCTCTTCTCATCTGCTTTCTTCTCCGACCCGGAGCTCTTATGCTTCTGCTCTTTGACGAGCACTCCGAGAGCATTCTGGTCCACTGCGTTAATCTGGTTGTTGTTGTCAACGGTCTCGCCTTTAGAGCTTTTTCTATCGGACTGTGTTGGAGCTCTGCAATAGGCCTCATCTAAGATTCGTTTACCACTGCCGTCATCACTGCCATTACCCTCCATCATGGCCAGCGGGGCCTTACTGCTGGGCTGCCGCTCATGTCTGCTGTAGCCGCCAAAGCAAGACGTGGACACTTTGTCATCACAAGCTTCACCTATCCTCTCGAGAGGAGGCGAAGATCGCGAGTCCAAAGAGAATCGCGAGGGGGAGTTGGATCTCATTTGTAGTTTCTGTGACAGGGACCAGGAAGGTTTCATCCCGTTTTCACTGAAAGCCAGAGGGCTGGTAACCGACGATCTGGAGGACAAGCTCTGGCGCTGGATGCTCCTCACGAAGGGCCGCTCTAGTTTAAA

Function

symbol description
usp31 Predicted to enable thiol-dependent deubiquitinase. Predicted to act upstream of or within protein deubiquitination and ubiquitin-dependent protein catabolic process. Orthologous to human USP31 (ubiquitin specific peptidase 31).

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 31-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU31064 True 4257 lncRNA 0.42 2 17503896 17516429

Neighbor

gene id symbol gene type direction distance location
hs3st2 hs3st2,LOC107741797,LOC107550309,LOC107574133,LOC107703334,LOC107674621,LOC108433116 coding upstream 54404 17423288 ~ 17449492 (+)
LOC122332748 NA coding upstream 119711 17381783 ~ 17384185 (+)
LOC122341850 LOC107727127,LOC107674682,LOC107745580,LOC799265,LOC108433148,LOC105013234 coding upstream 405931 17089814 ~ 17097965 (+)
litaf litaf,LOC107727125,LOC107703380,LOC107674718 coding upstream 458604 17043049 ~ 17045292 (+)
zc3h7a zc3h7a,LOC107727124,LOC107564690,LOC107674666,LOC107703382 coding upstream 466409 17024634 ~ 17037487 (+)
ube2ia ube2i,ube2ia,LOC105013396 coding downstream 49834 17566263 ~ 17570451 (+)
baiap3 baiap3,LOC107719179,LOC107550313,LOC107703313,LOC107674731,LOC107565767,LOC107749910 coding downstream 62311 17578740 ~ 17622221 (+)
gpr146 LOC107565765,LOC107710650,LOC107674685,LOC107703371,LOC107550312,LOC107719180 coding downstream 142005 17658434 ~ 17668692 (+)
gper1 LOC107703333,LOC107710646,LOC107579847,LOC107719188,LOC107565760,LOC107674622 coding downstream 162846 17679275 ~ 17685695 (+)
unkl unkl,LOC107550311,LOC107674636,LOC107565763,LOC107710649,LOC107703366,LOC106601098 coding downstream 175477 17691906 ~ 17715622 (+)
G20803 NA non-coding upstream 395202 17107992 ~ 17108694 (+)
G20831 NA non-coding upstream 427722 17075788 ~ 17076174 (+)
G20830 NA non-coding upstream 428321 17075353 ~ 17075575 (+)
G20829 NA non-coding upstream 429072 17074622 ~ 17074824 (+)
G20801 NA non-coding upstream 441073 17057704 ~ 17062823 (+)
G20915 LOC107550314,LOC107703374,LOC107719177,LOC107565769,LOC107741796 non-coding downstream 36945 17553374 ~ 17563364 (+)
G20927 NA non-coding downstream 55701 17572130 ~ 17572473 (+)
G20953 NA non-coding downstream 134338 17650767 ~ 17651301 (+)
G20951 h3f3b,H3F3A,LOC105909691,LOC101073377,LOC107388308,LOC102790198,LOC107572204,LOC106578873 non-coding downstream 172986 17689415 ~ 17690288 (+)
G20994 NA non-coding downstream 345638 17862067 ~ 17863081 (+)
LOC122341316 NA other upstream 303266 17137930 ~ 17200630 (+)
nsmce1 nsmce1 other upstream 386855 17113048 ~ 17117041 (+)
micall2a micall2,micall2a,LOC107703317,LOC107745593,LOC107568921,LOC107674716 other upstream 719085 16770545 ~ 16784811 (+)
LOC122331507 psmg3,LOC107703392 other upstream 804414 16690703 ~ 16699482 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other upstream 1296050 16179620 ~ 16207846 (+)
G20950 igfals,LOC107703367,LOC107719182,LOC107674637,LOC107565761,LOC107710645 other downstream 202753 17719182 ~ 17723423 (+)
mrtfbb LOC107725018,LOC107572174,LOC107703365,LOC107674669 other downstream 353748 17870177 ~ 17901491 (+)
polr3k polr3k,LOC107703329 other downstream 388155 17904584 ~ 17906643 (+)
si:ch211-66e2.5 si:ch211-66e2.5,LOC107572173,LOC107703361,LOC107596817,LOC107754045,LOC107735828,LOC107674574 other downstream 404488 17920917 ~ 17929634 (+)
LOC122341796 pde6g,LOC107690252,LOC107733865,LOC107685924,LOC107590586 other downstream 557646 18074075 ~ 18075616 (+)

Expression


Co-expression Network