LOC122341077 (LOC107553625,LOC107695676,LOC107601566,LOC101883507,LOC108431896,LOC103358698,LOC108275040)


Basic Information

Item Value
gene id LOC122341077
gene name LOC107553625,LOC107695676,LOC107601566,LOC101883507,LOC108431896,LOC103358698,LOC108275040
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4103239 ~ 4107748 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234413.1
AATGGTTAACTCCACCCCTCCTCCCCCACCTCCTTCCTGTTTGCGCTCCGCTGCCCAGTCTCATACTATGGCATTTTACGTCAGAGTGCAGCTGGAGCCAATCGGGAGCTCTGGGCCGCCCCCTCTGCAGCTCGACTCCACCCCTCCTTCTGGCCACATATATAGCAGCGCTCATTCTGTTGGCTCGAGTGTTCAACGTGCTGCTGTGGGCTCGAGAGACAGAGAGCCGTGGCACTGACAAAATCCACCGACATCGAGAGTGGATCTCCACGTTTCCTTGCCTAAATTGCCTTTCTTCCCAGAGCGTCTCGCTCATAACCCAGCGcatctttattgttttgttccCAGCATCCGGTCGCAAGATGGGATGCACCACAGGGCACTTCACTTGCCAACCGCAGACGACGGCGGCGGCCCCGAACCCCGAAGGCCAGCAGCAAGAAGGAGCACCCAAAGTCCCAGAGGTGCTGTCGTCCCTAGAGAGGCTCTCGCAAGCCACCGGAGGGATGGAGAAGTCTTGGTACCGCTGCATCTTTCCGTTCGGGATCATCTCGCTGGTGATCGGAGTGGCTGGAACCGGGGTGACGTACACGTACAACGATCTCCCGCAAACTAAGGTGGTTTCCGTGATCCTGTTGATTGCGGGGCTGGTCCTGGTAGTGATGGCGACCGCTTGCTGGACGGTCCATAAGAAGAAGCGCAGGAAAAAGAAGGAAGGGGGTTCCTTCAGCTCAGAACAGTGTCCCTTGTGAGAGAGCCCcccccccaaaacaaaacaagatctCTGTCCACTCAGGTATCCGTGAGGGACAAGTCGCAAAGTCGCCGAATCCCGTGGAAAGTACGGCGCAAGGCTGGCATGAGGGTTCAACCAGAGTCACGCATGCAGTTTACCGTCGCTCAGCAGGTGTCTGGTATCAAAACAAGCCTGGAGAgggacacacactcacacacacacacacaggacactTAACACTAGCCTGCGAGCCTCTCGCGGAGCCTCTGCTGTCGTCAACGCCGCTGTCAGTCTCCTGCATTCCTGTGACGCCGAAGAAGTGGGCCAGTGGCGGCAACCGGACACCGCGACGAAAGAGGAGTTCACCTCCGTCACCGTCGCACGTCATTCGCCCATCCAGTGACACCGTAGCAATGCGCGAGCTTTTTTACGGAGTGGAACCTGAACCAGCGTCTGCTAGCTAGAACCGGCAGCTGCGGATCAGGATAGGAAGAAAGCACGGACTGGCGAGGTCGAGAATGTGTCCGtccgcgcgtgtgtgtgtgtgtgcgtaatgTGTGCGCTGGATGGACTAGAGAGAGACAAGACACCTGCTCGGCCTCTTTCGCTGTCAGCCCTCCGTCAATCGTAGCCACTAATGATTTAGGACAGGGGTGCAGCGCCTGATTTGAAGGACGGAAAGATCCGAGCTTGATTTATTGGGAGTTTTACACAGTGTACAGTGTGTTGCAAGAGAGCTTTGCATTGGATTGTGTGCGCGTGCGACTGTATGTGAGTCTGTCTGGCAAATCCAAGACTCTTCAAGGACCTCATATAGACGGTATTCGGGAAAACGACAACAGAGGAGTTTTAAAACAGACACGGTGCAGAGAAAGGCAAGCAAGCCGAAGGTCCTTTTGTTCTGAGACAGCCAGAAAAGAAAACTCATTTCCTGTCTGACAGATGAGCAGGATTActaggggaggaaaaaaaagatgccacAAGGGTACACTAGAAGTCAAAAGTGTCAGTGGAgttttgttcttgtttcagTGCCTTGAGCAAGCAATAGGACTTAGCATGGTACCGTAGCTATGTTTTACCCCTCcgtctctcttttcctctcccaGTGCCAGCTTTAAAACTCAAACTCAGCTATTTTAGCACGGCCTTCTCGCCCCCAAAAACAACACGCATGAATACGTCGTCGCTTTGACCTGGTCAGAGCCCACAAAGGCTGGAGCTTACATCCGTTTTCACAATGGGAACACTGCTTATTTACACTGCCTTGATCTGGGAAGCATTTGGCACGTTTTGTTATGGATACAGTGGGTGGGTAGCAGATAATGAATTAAAGGGACAGGTCAgctaaaaatgaaacttctgtcatcCCTGTGTCGTTTTAAGTCTGTGCAGCTGACCTTCTTTTAAAGGAGGACAAAACGATGTATTGTGAAACTCGGTGGGGTCCAAAAAAGCTCTTTTGATGTTCTGCACattaacagaacagaaaaaaaaaacgtaccttcttttatgttccCTAGTAGAAAGGAAGTCGTACCAATTTGAGGGCGaggaaatgacagaattttcctttttgggaaAGTTTAGCCTTCAGATGTCTCGTAAATCCTGTTAACACTCTGTGTGAAGACTAAAATTCGGAGACGGGCAAAAATCCATACCAATTCAGAGGTTAATGCCCTTTTCCTTTCGCTAAAAGCTTATCGATCGAGATGTTTTCCGCGATGTTGAGGAGTGTATGTGAGAATCCTTGTGcataagagaaagaaaagaaacaggaTTAACAACCTTGAGTACTTGAAAAAGGCTGTTTTTGAAGCGTTTAGCTCTTAGCAGATGTGCTAAGCACGCCTTACCCAACTTGTCTGAGCCCCGAGGGAGATTTTATTGCTCTTTCATTGCTCAGATTTCATCTTCACTTATGTCTCGGATGCTTTACCTAAAATTACttccaacaaacaaaaatgcaggCAACTAGCGTTTAGAGCTCTAAAAGCAAATCCGGATATCTGAAGTAATTTGCCCTCGCGAGATAACATCTGTGTTCTTTTTGCGATCCCCGACTTCTGGTTGCACGTTTTGAGAAAACGCTGGTGAAATTACCGTCCATCTCTTAATCTCATTGGAGAAACGTTTTAAGATATCGACGAGATCTCAGTTGTGCTTAAATAGACGCAAGTTGAAGATTATGGCTTTTGTGACTACAAGCGTGTTTCTGGAGCGAACGCGGGCGCATGGCATGCACATCCAGGTGGAACTGATTTCTAACAGTGATGTCTGAACACACGTCTATGGATAAACACAGTGCCTTTTTGTCGACTGATGTACGTGCTGTAAAGCTGCCTGTGCCTCCTTAGCATTTTTCATTGCTTCACGCCAGAATGGGGTTTCTGTCCCTTTACAGAAACAGATAGCCCGCCTTGTTTTTTCCGCGGCGTGCTACGAGAAGTAACGAAGGGAGGGCGTCCAGAGTTTCAGACTGCATTTTAAACACCGTTCACAGTGCTCTTAACGAACAACGCGGACTAGAATCAGGGATGAGGCTGATATTCGAGCGGGAAAAGGGACCAGATGAGTTCAGTCGGGATATCAGTGACCGACCCTAATAGAGCGTCTGATCGTATCACGGAAAGCCAGTAATCCAAGATAGCTGTTTACACGAGCAAATCAAGATCAGACGCTCAGATCTGAGTCATCAGGAAAACATGGTGCTGCTCCCCCCTCGAAATCAAcgtttttgcctttatttttgCAGGGAAAATCCCTAATCGTCCTTAAAAGTAACACTGTGCGAGATTTAAAGGCGTCTTAAATAGGTTTATCCTATATTTATCTCGTTTTgagcataaatatataaaaagatatatgCTTTATATAGTCCTTAGCCAGCATTTAAAGTGGGCCAAAGTCGTCCTACAACCAAAACCACACTCGTTCTTGTCGTTATTGATgactttaatataataaacctCAATATGACTATAATGATGACTTTTTTTGATCCGCTTCcaaaatgttgactactgtatatgcatatattatacatataataagGACATCTGTAAATCTCCCAGCTTCTAAATGACCGAAAGTAAAGGATTTTTAGATAACACGGTCAAGAACAAATAGACGCAAACACGTGGCGTTTCTTTATTATTTCGTAACCCAGTTTTTCCCCAGATTGCTCCCATGCATATCTGGAAGCAGTTGTTCGCGTGATTTCCTCCAGATTTCAGATTCTCTCCAGccctttttcttcctttctttacGAGAGCTGGAAGGAGGGAGGTTTATAGAGGGTGAAGGCATTTGCAGAGTTGTGCAATTTCATTGAAAAATACGTGAGAGGAACGTGACGGGCCGAGCGGTCGCAGACGCACCGGACTCGTTAGATGCGCGCCCGGCTTCGTTCATCGCCTCGTAGTCTTCTGCTGTACATAAATCCACATCCGAACCCCTCGACGCACCCAACTGTTTTCGCTCTTGTTTAATGTCGAAGGCGTTACGACCGAGCGAGTCGTGAATGATTCGCCGGTTGTTTTCGTGTCGCGGAACGAGAAAGAGTAAATCTACCTCTCTAGTTCTGagagcgtgttttttttttccgccgTCCTTACATTCTCCAGAATGCTTTTTCTCTTTAACGAATGCCAAAATCTGTATTCCGTGTCAAACTGTGTGATGTAAATAGtagctatttatatttttacatttatattcatattaaaaaaaatgcttttgaaaagtTGTATTAAAGAACTGTTAACGTGA

Function

NR:

description
PREDICTED: transmembrane protein 100-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234413.1 True 4510 mRNA 0.47 1 4103239 4107748

Neighbor

gene id symbol gene type direction distance location
ccnf ccnf,LOC107718614,LOC107678263 coding downstream 7944 4079508 ~ 4095295 (-)
abca3b abca3,abca3b,LOC107742093,LOC107601545,LOC107718613 coding downstream 25516 4038547 ~ 4077723 (-)
LOC122340774 LOC107601586,LOC107553659,LOC107553662,LOC107742071,LOC107695651,LOC107678268 coding downstream 68141 4027890 ~ 4035098 (-)
LOC122340742 LOC107553662,LOC107553659,LOC107678269,LOC107742071,LOC107601586,LOC107742084,LOC107678268 coding downstream 78600 4021105 ~ 4024639 (-)
LOC122340716 cyp2k21,LOC107553659,LOC107678268,LOC107742084,LOC107553662,LOC107718554,LOC107742071,LOC107678269,LOC107601586,LOC107695651 coding downstream 83528 4011064 ~ 4019711 (-)
LOC122341056 LOC107742113,LOC107695706,LOC107601565 coding upstream 6631 4114379 ~ 4121527 (-)
dnaja3a LOC107742100,LOC107718562,LOC107601584,LOC107661643,LOC107553666,LOC107695654 coding upstream 38936 4146684 ~ 4153958 (-)
vasnb LOC107695709,LOC107715639,LOC107601582,LOC107718560,LOC107661641,LOC107553664 coding upstream 108103 4215851 ~ 4241696 (-)
glis2b LOC107661644,LOC107553665,LOC107695710,LOC107601579 coding upstream 170747 4278495 ~ 4314259 (-)
LOC122341001 LOC107718621,LOC107660259 coding upstream 441939 4549687 ~ 4568305 (-)
LOC122342142 NA non-coding downstream 316374 3783737 ~ 3786865 (-)
G16815 NA non-coding downstream 481370 3621489 ~ 3621869 (-)
G16779 NA non-coding downstream 576391 3503008 ~ 3526848 (-)
G16780 NA non-coding downstream 578001 3475325 ~ 3525238 (-)
G16901 NA non-coding upstream 29370 4137118 ~ 4138203 (-)
G16926 NA non-coding upstream 126627 4234375 ~ 4277855 (-)
G16930 NA non-coding upstream 157463 4265211 ~ 4267492 (-)
G16933 NA non-coding upstream 207433 4315181 ~ 4315571 (-)
G16949 NA non-coding upstream 261977 4369725 ~ 4371084 (-)
LOC122340684 cyp2k6,LOC107678271,LOC107553656,LOC107678272 other downstream 115808 3984656 ~ 3987431 (-)
LOC122341931 LOC107673185,LOC107720837,LOC107573119 other downstream 239388 3847980 ~ 3863851 (-)
LOC122341810 pctp,LOC107710979,LOC107695691,LOC107718942,LOC107567557,LOC107579518 other downstream 619790 3473444 ~ 3483449 (-)
LOC122333478 LOC107695702,LOC107724673,LOC107601588,LOC107553654,LOC107716264,LOC107673211 other downstream 784053 3314752 ~ 3319186 (-)
G16478 NA other downstream 1449209 2649842 ~ 2654030 (-)
G16953 adcy9,LOC107695715,LOC107718568,LOC107715643,LOC107553626,LOC107661757,LOC101884360 other upstream 295349 4403097 ~ 4407697 (-)
G17131 trap1 other upstream 339632 4447380 ~ 4448881 (-)
G17133 trap1,LOC107573746 other upstream 342567 4450315 ~ 4453135 (-)
LOC122341034 NA other upstream 494803 4602551 ~ 4650642 (-)
G17167 ep300,LOC107695656,LOC106511457 other upstream 570836 4678584 ~ 4679783 (-)

Expression


Co-expression Network