LOC122341001 (LOC107718621,LOC107660259)


Basic Information

Item Value
gene id LOC122341001
gene name LOC107718621,LOC107660259
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4549687 ~ 4568305 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234290.1
CCTAGACACTAGTGTGATTGGAGGAACTGTGCAATCACTTAAGATGTTCAGTGAAATGAGAAAGTGAAACTAAACCAGGAATCTTCTCCGTGTGATCGGAGCAGTCCACGTTGAAGTTAAGCATCCATGCTCTTCAAAGATGAAGTTCATTTGTTTGACCCTCCTGATTATTAGTGGAATTACTGATTCAAGAACAGAGCAGTATGAAGTAGTTGGTCCTGCAGATGCTGTTGCTGTAGCTGGTGAAGATGTGATTCTGCCCTGTTCAGTCAAACCCAGCATCAGTGTTGAGGACATGAGAGTGGAGTGGTTTAGATCTGACCTGAAAGACTCACAACTAGTGCATCTCTATGAGGATCAtgaagacagaaacacagagcagaTTGTATCCTACAGAGGGAGAACAGAACTGAATCATCAAGAACTACAGAGAGGAGATGCATCACTCAAACTCTCATCAGTCCGAGTCTCTGATGAAGGACGTTACAAGTGTTTTATTCAGTCCAAATCCTGGAACGATGATGCAACTGTTAATGTCAGAGTTGAAGTTGTAGGAACTCCCCCGGTGATCACTGTAGATGGGTTTGATCATTCAGGAGGACTTCATCTACAGTGTGACTCTGAAGGGTGGTATCCTGAACCTGTTCTTGAGTGGCTGAACAGAGAAGGAGTCAGTTTGAGTTCAGACACTAGAGTGACACACAGAAACCCAAAAGGATTCAGTGTGAAACACACCATCACTGTACGTCACAGAGACGACAAGATTCACTGCAGAGTCAGACTGAGACATCACATGCTGGAGACACAGATTATCACCACAAgtAAAAGGTTTAGTTCTTGGAGGACATCAATCATCCTGATTTCAGTAGCTGTTGTGCTCAGTGTGATTGCTGGAATACTGATAGCTGTGTTTGCTCAGAAAAACAGAGGACACAAAGAACTactaaagagaagaaaagaatacaaaatgAACTTGATCAACTAGTGAATCAGAAGAGAATACTACAAAATGCCCACAATCAACTACATAACGAGAAAGAGTAAACTGCAGAATGCACACAAGCAAGTACAAAATGAGAAGAGAAGAATCCAAGAGgAACGTGATCAACTTTTACAAAGTCAGAAGATGATTATACCAAAAGTGATCAcgcatttaaaa

Function

NR:

description
PREDICTED: butyrophilin-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234290.1 True 1159 mRNA 0.42 12 4549687 4568305

Neighbor

gene id symbol gene type direction distance location
glis2b LOC107661644,LOC107553665,LOC107695710,LOC107601579 coding downstream 235428 4278495 ~ 4314259 (-)
vasnb LOC107695709,LOC107715639,LOC107601582,LOC107718560,LOC107661641,LOC107553664 coding downstream 307991 4215851 ~ 4241696 (-)
dnaja3a LOC107742100,LOC107718562,LOC107601584,LOC107661643,LOC107553666,LOC107695654 coding downstream 395729 4146684 ~ 4153958 (-)
LOC122341056 LOC107742113,LOC107695706,LOC107601565 coding downstream 428160 4114379 ~ 4121527 (-)
LOC122341077 LOC107553625,LOC107695676,LOC107601566,LOC101883507,LOC108431896,LOC103358698,LOC108275040 coding downstream 441939 4103239 ~ 4107748 (-)
LOC122340945 NA coding upstream 5042 4573347 ~ 4588316 (-)
cactin LOC107662985,LOC107599251,LOC107698503,LOC107600224 coding upstream 217732 4786037 ~ 4792946 (-)
blvra blvra,LOC107599292,LOC107757787 coding upstream 252787 4821092 ~ 4827401 (-)
LOC122333724 hecw1b,hecw1,LOC107600217,LOC107662981,LOC108433086 coding upstream 262849 4831154 ~ 4842674 (-)
LOC122342113 LOC107715646,LOC107550238,LOC107718628 coding upstream 369115 4937420 ~ 4940603 (-)
G17142 NA non-coding downstream 89651 4458698 ~ 4460036 (-)
G17129 NA non-coding downstream 105763 4443698 ~ 4443924 (-)
G16974 NA non-coding downstream 106418 4442811 ~ 4443269 (-)
G16950 adcy9,LOC107695715,LOC107715643,LOC107661757,LOC107553626,LOC107718568 non-coding downstream 152654 4395201 ~ 4397033 (-)
G16949 NA non-coding downstream 178603 4369725 ~ 4371084 (-)
G17154 NA non-coding upstream 41428 4609733 ~ 4612198 (-)
G17127 NA non-coding upstream 97519 4665824 ~ 4666415 (-)
G17201 urgcp,LOC107662982,LOC107599277 non-coding upstream 234156 4802461 ~ 4812447 (-)
G17223 NA non-coding upstream 334389 4902694 ~ 4907908 (-)
G17245 NA non-coding upstream 419197 4987502 ~ 4991390 (-)
G17133 trap1,LOC107573746 other downstream 96552 4450315 ~ 4453135 (-)
G17131 trap1 other downstream 100806 4447380 ~ 4448881 (-)
G16953 adcy9,LOC107695715,LOC107718568,LOC107715643,LOC107553626,LOC107661757,LOC101884360 other downstream 141990 4403097 ~ 4407697 (-)
LOC122340684 cyp2k6,LOC107678271,LOC107553656,LOC107678272 other downstream 562256 3984656 ~ 3987431 (-)
LOC122341931 LOC107673185,LOC107720837,LOC107573119 other downstream 685836 3847980 ~ 3863851 (-)
LOC122341034 NA other upstream 34246 4602551 ~ 4650642 (-)
G17167 ep300,LOC107695656,LOC106511457 other upstream 110279 4678584 ~ 4679783 (-)
LOC122342176 nfia,nfixb,LOC107592693,LOC107599440,LOC107715650 other upstream 275649 4843954 ~ 4887166 (-)
plppr2a plppr2a,LOC107715659,LOC107550254,LOC107695724,LOC107718583,LOC107661668,LOC108440982,LOC108274416 other upstream 778246 5346551 ~ 5388221 (-)
G17357 LOC107731470,LOC107659573,LOC107550263 other upstream 1163067 5731372 ~ 5734483 (-)

Expression


Co-expression Network