tecra (tecra,LOC107661839,LOC107711203,LOC107602715,LOC107599304,LOC107670448)


Basic Information

Item Value
gene id tecra
gene name tecra,LOC107661839,LOC107711203,LOC107602715,LOC107599304,LOC107670448
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 6656406 ~ 6664148 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235361.1
AAAGACAGTAAATATACCAGATAGCTTTGCCTGTTTGTTTGATCTAATTACTGCTGACAGACACAAATGGCTTCTGTACGGAAACAACCTGCCCAAACCTAATGGGAATACCTCTAGGGACCTCAGAAGTGGCTTATTTATTGACTCCAAGCCACGGTCAAACTCAAATAGATGTCCTGACAGAGCCATTGCATGACTCTGCTTGCAAGGCAGATGTATTAATATTCCCCCGGACACACACTCCTGCTGTACAGATGCACGctatcctaaccctaattcaaaaAGAGACGGGGTGTGGAGGTAAGAGCCACGGCCAACTGGATTGGCCCGAATCCCACAAGGTCACGGGGCTGGTATTCAGCAAAGCAGGCATATAAATTTAGCTTCATGAAAAGCCACGGATTATGTCTTGGGACTCTCAGATTTCGTCTTCGGAGGAGTGGTTGTGATGGCCACCCCTCAGGTGTTAAGAGGTGGGCGATATTTCAGTGACACTGCACTCACTCACACCGTCCTGCTCCGTCGCCCCTCTTCCCCCGGGTGCATTGCGCTCAACGGAAAGAGCTGGATTTTGGATTTACTATTAAGAACTGAGGCTTGAGGACTTAGGAGAGATGTGTGGGGTGTGAAAAAGACCTACGGTGTGCAATAAGTTGGAAGAAGTATCATGGATGCATTAGCTTTAGAGGCAAAAGGGGCTAAGAGTGAAAGCGCACCAGCTCCTGCACCAGCATCGGCACCCGCCAAACCCAGAccaaaaccccccaaaaaagctaAACGAATTGTTTACTTCGAGGTGGAGATACTAGACATCAAAACCCGGGAAAAACTACTGCTTCTGGATAAGGTAGAGCCAACGGCCACTATTTTGGACATTAAGTCTTTGTTTCACAAATCAAATCCACACTGGTATCCTGCCAGACAGTCTTTATGCCTGGACCCAAAAGGAAAGCCCTTAAGAGATGAGGAAATCCTTCAGGAGCTGCCGGTGGGAACCACTGCGACCTTCTACTTCAGAGACTTGGGAGCCCAGATCGCCTGGGGAACTGTGTTCCTAATCGAGTGCATTGGACCACTTGTCATATatctgctgttttattttcGACTGCCTTTAATCTACGCTCCCAAGTACGAGTTCACTGCCAGTAAACATTTGGTCGTGCATATCGCCTGTGTGTGTCATTCCTTCCACTATGTGAAGCGAATCTTGGAGACGCTGTTTGTCCATCGCTTCTCCCATGGCACCATGCCATTTcgcaacatttttaaaATCTGTTCTTATTACTGGTGCTCTGCCGCATGGATGGCTTATTACATCAATCACCCTCTCTACACACCTCCATATTACGGGGAGAAGCAGGTGAAGGCAGCTTTGGGAATCTTTCTATTCTGTCAGCTCGGCAGCTTCTCGATTCACATGGCTCTGCGTAATCTCAAACTACCTGGCTGCAAGATGAAGAAGATTCCTTATCCAACCAAAAATCCTTTCACATGGATATTTGCTCTAGTCTCGTGCCCAAACTACACATACGAGCTCGGATCTTGGCTCGGTTTCACGCTCATGACCCAGTGCGTCCCCGTCTTGCTCTTCACCGTGGTGGGATTCATACAGATGACGGTTTGGGCCAAAGGAAAACATCGCAGCTACCTGAAGGAGTTCAAAGAATATCCCACTCTGCGCTCCCCCATCCTACCTTTCATCCTATAGCATACATTTAAAGCAAGTCTTAATATATACCCAAACGAATGACATAATAACTAGTAAACTACGAGACACTCTAAACGTCGTATTTGTCAAGAAAAGCCATTCTATTTTAATAGTCATAGATTGAAAATGTATATCGTATCGTTCAAATACATGAATATAATGATgcaaaaatatggaaataaaaagaTACCGAATTAGAACCTAGAAATAAAgcgatatataatatataaataaatctatcatttatttttccttcacttgaaaaaagaaaaactattatttcTAAGGATGCATTTGAAATTAAGTCTGGTttcttgctaaaaaaaaaaaaaaaaaaattttttgaatCACAATCAACTATGCTTTCTATCTGACTGTGGATGCCAATATGAAAGCTTCTCTCGGAGTAAATGCACTGGCTGTGCTGGAATCAAAACATCAGTAACTCGCTCCATATCTCTGCTTGGCAGGCTAAATGCACAACAGAAAAGACTGATGCCACAAATGCAGTTTCAGATTCTGAAACTGGAATTTATTTCCTAAATTTGCAGGTCCATTTTAAGACTGCTGTAAAACATCGCTGAACATCGCACATTTAATTGGACAAGaacaatgtttatataatattgcgACACCGTAAATcatttctgacaaaaaaaaaaacaaaacagtaggACGAAACACCGGTGAATAAAAAGCTCCAccgtagaaaaaaaaaaaa
>XM_043235362.1
AGAAGAGCTGATGGAAACTAAAGACAGTAAATATACCAGATAGCTTTGCCTGTTTGTTTGATCTAATTACTGCTGACAGACACAAATGGCTTCTGTACGGAAACAACCTGCCCAAACCTAATGGGAATACCTCTAGGGACCTCAGAAGTGGCTTATTTATTGACTCCAAGCCACGGTCAAACTCAAATAGATGTCCTGACAGAGCCATTGCATGACTCTGCTTGCAAGGCAGATGTATTAATATTCCCCCGGACACACACTCCTGCTGTACAGATGCACGctatcctaaccctaattcaaaaAGAGACGGGGTGTGGAGGTAAGAGCCACGGCCAACTGGATTGGCCCGAATCCCACAAGGTCACGGGGCTGGTATTCAGCAAAGCAGGCATATAAATTTAGCTTCATGAAAAGCCACGGATTATGTCTTGGGACTCTCAGATTTCGTCTTCGGAGGAGTGGTTGTGATGGCCACCCCTCAGGTGTTAAGAGGTGGGCGATATTTCAGTGACACTGCACTCACTCACACCGTCCTGCTCCGTCGCCCCTCTTCCCCCGGGTGCATTGCGCTCAACGGAAAGAGCTGGATTTTGGATTTACTATTAAGAACTGAGGCTTGAGGACTTAGGAGAGATGTGTGGGGTGTGAAAAAGACCTACGGTGTGCAATAAGTTGGAAGAAGTATCATGGATGCATTAGCTTTAGAGGCAAAAGGGGCTAAGAGTGAAAGCGCACCAGCTCCTGCACCAGCATCGGCACCCGCCAAACCCAGAccaaaaccccccaaaaaagctaAACGAATTGTTTACTTCGAGGTGGAGATACTAGACATCAAAACCCGGGAAAAACTACTGCTTCTGGATAAGGTAGAGCCAACGGCCACTATTTTGGACATTAAGTCTTTGTTTCACAAATCAAATCCACACTGGTATCCTGCCAGACAGTCTTTATGCCTGGACCCAAGAAAGCCCTTAAGAGATGAGGAAATCCTTCAGGAGCTGCCGGTGGGAACCACTGCGACCTTCTACTTCAGAGACTTGGGAGCCCAGATCGCCTGGGGAACTGTGTTCCTAATCGAGTGCATTGGACCACTTGTCATATatctgctgttttattttcGACTGCCTTTAATCTACGCTCCCAAGTACGAGTTCACTGCCAGTAAACATTTGGTCGTGCATATCGCCTGTGTGTGTCATTCCTTCCACTATGTGAAGCGAATCTTGGAGACGCTGTTTGTCCATCGCTTCTCCCATGGCACCATGCCATTTcgcaacatttttaaaATCTGTTCTTATTACTGGTGCTCTGCCGCATGGATGGCTTATTACATCAATCACCCTCTCTACACACCTCCATATTACGGGGAGAAGCAGGTGAAGGCAGCTTTGGGAATCTTTCTATTCTGTCAGCTCGGCAGCTTCTCGATTCACATGGCTCTGCGTAATCTCAAACTACCTGGCTGCAAGATGAAGAAGATTCCTTATCCAACCAAAAATCCTTTCACATGGATATTTGCTCTAGTCTCGTGCCCAAACTACACATACGAGCTCGGATCTTGGCTCGGTTTCACGCTCATGACCCAGTGCGTCCCCGTCTTGCTCTTCACCGTGGTGGGATTCATACAGATGACGGTTTGGGCCAAAGGAAAACATCGCAGCTACCTGAAGGAGTTCAAAGAATATCCCACTCTGCGCTCCCCCATCCTACCTTTCATCCTATAGCATACATTTAAAGCAAGTCTTAATATATACCCAAACGAATGACATAATAACTAGTAAACTACGAGACACTCTAAACGTCGTATTTGTCAAGAAAAGCCATTCTATTTTAATAGTCATAGATTGAAAATGTATATCGTATCGTTCAAATACATGAATATAATGATgcaaaaatatggaaataaaaagaTACCGAATTAGAACCTAGAAATAAAgcgatatataatatataaataaatctatcatttatttttccttcacttgaaaaaagaaaaactattatttcTAAGGATGCATTTGAAATTAAGTCTGGTttcttgctaaaaaaaaaaaaaaaaaaattttttgaatCACAATCAACTATGCTTTCTATCTGACTGTGGATGCCAATATGAAAGCTTCTCTCGGAGTAAATGCACTGGCTGTGCTGGAATCAAAACATCAGTAACTCGCTCCATATCTCTGCTTGGCAGGCTAAATGCACAACAGAAAAGACTGATGCCACAAATGCAGTTTCAGATTCTGAAACTGGAATTTATTTCCTAAATTTGCAGGTCCATTTTAAGACTGCTGTAAAACATCGCTGAACATCGCACATTTAATTGGACAAGaacaatgtttatataatattgcgACACCGTAAATcatttctgacaaaaaaaaaaacaaaacagtaggACGAAACACCGGTGAATAAAAAGCTCCAccgtagaaaaaaaaaaaa

Function

symbol description
tecra Predicted to enable oxidoreductase activity. Predicted to be involved in very long-chain fatty acid biosynthetic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human TECR (trans-2,3-enoyl-CoA reductase).

NR:

description
PREDICTED: very-long-chain enoyl-CoA reductase-like

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG:

id description
K10258 TER, TSC13, CER10; very-long-chain enoyl-CoA reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235361.1 False 2429 mRNA 0.43 11 6656406 6664129
XM_043235362.1 True 2445 mRNA 0.43 11 6656406 6664148

Neighbor

gene id symbol gene type direction distance location
zgc:103625 zgc:103625,LOC107673781,LOC107661844,LOC107722893,LOC107599339 coding downstream 180524 6473384 ~ 6475882 (-)
LOC122341443 LOC107599331,LOC107693566,LOC107599329,LOC107722885,LOC107565605,LOC107653436 coding downstream 217086 6435048 ~ 6439320 (-)
LOC122341433 NA coding downstream 264753 6375343 ~ 6391653 (-)
LOC122341427 LOC107602703,LOC107661850,LOC107599331,LOC107693566,LOC107653436,LOC107572241,LOC107722887,LOC107565605,LOC107661873 coding downstream 282366 6345041 ~ 6374040 (-)
kcnj2b kcnj2b,LOC107661877,LOC107565614,LOC107718639,LOC107653444,LOC107563240,LOC105894957 coding downstream 341679 6313405 ~ 6314727 (-)
LOC122335862 zgc:112146,zgc:123284,LOC107728679,LOC107661865 coding upstream 19777 6683925 ~ 6685766 (-)
LOC122335877 zgc:112146,zgc:123284,LOC107728679,LOC107661865 coding upstream 23640 6687788 ~ 6689533 (-)
LOC122341271 LOC107711211,LOC107602718,LOC107661825,LOC107711209 coding upstream 29427 6693575 ~ 6696105 (-)
LOC122341855 LOC107661829,LOC107711209,LOC107711211,LOC107711206,LOC107599345,LOC107670508,LOC107602719,LOC107728674 coding upstream 33552 6697700 ~ 6699695 (-)
LOC122341853 LOC107661829,LOC107711209,LOC107599345,LOC107711206,LOC107728674,LOC107670508,LOC107602719 coding upstream 47408 6711556 ~ 6715081 (-)
G17624 NA non-coding downstream 57493 6598710 ~ 6598913 (-)
G17603 NA non-coding downstream 188581 6467425 ~ 6467825 (-)
G17580 LOC107661876,LOC107602705,LOC107711171 non-coding downstream 206654 6447786 ~ 6449752 (-)
G17516 NA non-coding downstream 355036 6300730 ~ 6301370 (-)
G17496 NA non-coding downstream 391078 6251076 ~ 6265328 (-)
G17740 gipc1,LOC107670535,LOC107728688,LOC107599306,LOC107661840,LOC107711205,LOC107602717 non-coding upstream 5313 6669461 ~ 6674354 (-)
G17743 NA non-coding upstream 12685 6676833 ~ 6678717 (-)
G17752 NA non-coding upstream 151783 6815931 ~ 6818255 (-)
G17769 NA non-coding upstream 177846 6841994 ~ 6842284 (-)
G17773 NA non-coding upstream 183960 6848108 ~ 6848596 (-)
crb3a crb3,crb3a,LOC107599343,LOC107602711 other downstream 30875 6619217 ~ 6625531 (-)
LOC122341483 LOC107661847,LOC107711201,LOC107728682,LOC107670454,LOC107599341,LOC100536643,LOC107602685 other downstream 42084 6607952 ~ 6614322 (-)
LOC122333927 LOC107599328,LOC107661850,LOC107602703,LOC107711190,LOC107599331,LOC107693566,LOC107722885,LOC107565605,LOC107673775,LOC107563216,LOC107599329,LOC107653436 other downstream 232121 6394047 ~ 6424285 (-)
LOC122333912 LOC107565605,LOC107653436,LOC107693566,LOC107599328,LOC107660297,LOC107673775,LOC107693569,LOC107693570,LOC107572241 other downstream 312738 6316265 ~ 6343668 (-)
G17468 si:dkey-117i10.1,LOC107753760,LOC107565612,LOC107661874 other downstream 550416 5954148 ~ 6105990 (-)
LOC122341856 LOC107711206,LOC107602719,LOC107661829,LOC107711209,LOC107711210,LOC107661830,LOC107599345,LOC107602722,LOC107728674 other upstream 38355 6702503 ~ 6709381 (-)
LOC122331786 LOC107693569,LOC107722887,LOC107673775,LOC107563216,LOC107599327,LOC107572241,LOC107693566,LOC107661871,LOC107661873,LOC107599328 other upstream 1232454 7896602 ~ 7913434 (-)
LOC122341278 adgrl1,LOC107711219,LOC107599314,LOC107602690,LOC107661818,LOC107744976 other upstream 1256256 7920404 ~ 7945973 (-)
LOC122331739 NA other upstream 1346828 8010976 ~ 8014701 (-)
fam234b srebf2,fam234b,LOC107690127,LOC107676178,LOC107572757,LOC107745393,LOC107576065,LOC107574637,LOC107721680,LOC107714892 other upstream 1389891 8054039 ~ 8218088 (-)

Expression


Co-expression Network