G17773


Basic Information

Item Value
gene id G17773
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 6848108 ~ 6848596 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU26542
CgtttgatttttacatttttattattttttttcaattaacaaCACTTCTAATCGTCAGTCTCTGTGAAGCCAAATCACACCTTTTACAGATACTATATAGTGGAAATTGAAAGGGCAGGAAAATCCAGTCAAATAGCTTCCGCTTTCACCCTACCAAAACAGAAGAAAGCCTAATTATGCTAATGGTGCACATACACTTGATCATATGCACCCACAAATGAACTATACACGACACGTACGCACGCAAGAAAAGTCTCAGATTCAGTCCATTCAAAGCAGTTTCTGACATCGCAATATCAAATATCTTCTGACTACGCGAAACCACCAAACTCGATAATGTCATGAAAGTTTGATCCTACCAATTCGATTTGTCTAAATTGTGTTATGGTGCATGCgctgctgcttctgctgctgtgtTGGTTGGAATCTTCCATCGAGCTTGTTAGAGAAGCTTCGGTCTTGAGACGGACCGATCTGAGTCAGCGAAAC

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
TU26542 True 489 lncRNA 0.40 1 6848108 6848596

Neighbor

gene id symbol gene type direction distance location
tmed1a tmed1a,LOC107661822,LOC107711216,LOC107599309,LOC107602724,LOC107744983,LOC107670474 coding downstream 7218 6837465 ~ 6840890 (-)
qtrt1 qtrt1,LOC107744982,LOC107661875,LOC107670462 coding downstream 51895 6791981 ~ 6796213 (-)
LOC122342162 LOC565691,LOC107711212,LOC107599308,LOC107661824,LOC107602688,LOC108429693,LOC107670443,LOC108257500 coding downstream 57414 6727094 ~ 6790694 (-)
LOC122341854 zgc:163083,LOC107711208,LOC107602720,LOC107711209,LOC107599345,LOC107661829,LOC107711206,LOC107728674 coding downstream 127349 6717182 ~ 6720759 (-)
LOC122341853 LOC107661829,LOC107711209,LOC107599345,LOC107711206,LOC107728674,LOC107670508,LOC107602719 coding downstream 133027 6711556 ~ 6715081 (-)
tnfsf18 NA coding upstream 3629 6852225 ~ 6857949 (-)
adgrl1a adgrl1,LOC107711219,LOC107599314 coding upstream 73601 6922197 ~ 7068705 (-)
znf750 LOC107711220,LOC107602728,LOC107672510,LOC107670504,LOC107744962,LOC107599316 coding upstream 323558 7172154 ~ 7176859 (-)
atp5pd atp5h,LOC107672438,LOC107587968,LOC107670447,LOC107599347 coding upstream 417833 7266429 ~ 7269574 (-)
ndel1b ndel1b,LOC107744966,LOC107599320,LOC107670517,LOC107672491 coding upstream 433088 7281684 ~ 7294005 (-)
G17769 NA non-coding downstream 5824 6841994 ~ 6842284 (-)
G17752 NA non-coding downstream 29853 6815931 ~ 6818255 (-)
G17743 NA non-coding downstream 169391 6676833 ~ 6678717 (-)
G17740 gipc1,LOC107670535,LOC107728688,LOC107599306,LOC107661840,LOC107711205,LOC107602717 non-coding downstream 173754 6669461 ~ 6674354 (-)
G17624 NA non-coding downstream 249195 6598710 ~ 6598913 (-)
G17762 NA non-coding upstream 13866 6862462 ~ 6867181 (-)
G17829 NA non-coding upstream 340901 7189497 ~ 7194116 (-)
LOC122331317 NA non-coding upstream 371426 7220022 ~ 7233743 (-)
G17851 LOC107587965,LOC107672450,LOC107711223,LOC107744987,LOC107670478,LOC107599348 non-coding upstream 446438 7295034 ~ 7361176 (-)
G17882 NA non-coding upstream 562694 7411290 ~ 7411675 (-)
LOC122341856 LOC107711206,LOC107602719,LOC107661829,LOC107711209,LOC107711210,LOC107661830,LOC107599345,LOC107602722,LOC107728674 other downstream 138727 6702503 ~ 6709381 (-)
crb3a crb3,crb3a,LOC107599343,LOC107602711 other downstream 222577 6619217 ~ 6625531 (-)
LOC122341483 LOC107661847,LOC107711201,LOC107728682,LOC107670454,LOC107599341,LOC100536643,LOC107602685 other downstream 233786 6607952 ~ 6614322 (-)
LOC122333927 LOC107599328,LOC107661850,LOC107602703,LOC107711190,LOC107599331,LOC107693566,LOC107722885,LOC107565605,LOC107673775,LOC107563216,LOC107599329,LOC107653436 other downstream 423823 6394047 ~ 6424285 (-)
LOC122333912 LOC107565605,LOC107653436,LOC107693566,LOC107599328,LOC107660297,LOC107673775,LOC107693569,LOC107693570,LOC107572241 other downstream 504440 6316265 ~ 6343668 (-)
LOC122331786 LOC107693569,LOC107722887,LOC107673775,LOC107563216,LOC107599327,LOC107572241,LOC107693566,LOC107661871,LOC107661873,LOC107599328 other upstream 1048006 7896602 ~ 7913434 (-)
LOC122341278 adgrl1,LOC107711219,LOC107599314,LOC107602690,LOC107661818,LOC107744976 other upstream 1071808 7920404 ~ 7945973 (-)
LOC122331739 NA other upstream 1162380 8010976 ~ 8014701 (-)
fam234b srebf2,fam234b,LOC107690127,LOC107676178,LOC107572757,LOC107745393,LOC107576065,LOC107574637,LOC107721680,LOC107714892 other upstream 1205443 8054039 ~ 8218088 (-)
LOC122334075 NA other upstream 1210035 8058631 ~ 8171661 (-)

Expression


Co-expression Network