RNA id: TU26542


Basic Information

Item Value
RNA id TU26542
length 489
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G17773
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 6848108 ~ 6848596 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CgtttgatttttacatttttattattttttttcaattaacaaCACTTCTAATCGTCAGTCTCTGTGAAGCCAAATCACACCTTTTACAGATACTATATAGTGGAAATTGAAAGGGCAGGAAAATCCAGTCAAATAGCTTCCGCTTTCACCCTACCAAAACAGAAGAAAGCCTAATTATGCTAATGGTGCACATACACTTGATCATATGCACCCACAAATGAACTATACACGACACGTACGCACGCAAGAAAAGTCTCAGATTCAGTCCATTCAAAGCAGTTTCTGACATCGCAATATCAAATATCTTCTGACTACGCGAAACCACCAAACTCGATAATGTCATGAAAGTTTGATCCTACCAATTCGATTTGTCTAAATTGTGTTATGGTGCATGCgctgctgcttctgctgctgtgtTGGTTGGAATCTTCCATCGAGCTTGTTAGAGAAGCTTCGGTCTTGAGACGGACCGATCTGAGTCAGCGAAAC

Function

GO:

id name namespace
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26533 lncRNA downstream 5824 6841994 ~ 6842284 (-) True G17769
TU26511 lncRNA downstream 29853 6815931 ~ 6818255 (-) True G17752
TU26504 lncRNA downstream 143370 6704457 ~ 6704738 (-) False LOC122341856
TU26503 lncRNA downstream 144375 6703420 ~ 6703733 (-) False LOC122341856
TU26497 lncRNA downstream 169391 6676833 ~ 6678717 (-) True G17743
TU26525 lncRNA upstream 13866 6862462 ~ 6867181 (-) True G17762
TU26609 lncRNA upstream 340901 7189497 ~ 7194116 (-) True G17829
XR_006248150.1 lncRNA upstream 371426 7220022 ~ 7233743 (-) True LOC122331317
TU26628 lncRNA upstream 374188 7222784 ~ 7233604 (-) False LOC122331317
TU26637 lncRNA upstream 446438 7295034 ~ 7361176 (-) True G17851
XM_043234965.1 mRNA downstream 7218 6837465 ~ 6840890 (-) True tmed1a
XM_043229409.1 mRNA downstream 51895 6791981 ~ 6796213 (-) True qtrt1
XM_043235971.1 mRNA downstream 57415 6727094 ~ 6790693 (-) False LOC122342162
XM_043228996.1 mRNA upstream 3629 6852225 ~ 6857949 (-) True tnfsf18
XM_043228985.1 mRNA upstream 3629 6852225 ~ 6857942 (-) False tnfsf18
XM_043235353.1 mRNA upstream 73601 6922197 ~ 7068705 (-) False adgrl1a
XM_043235352.1 mRNA upstream 73601 6922197 ~ 7068705 (-) True adgrl1a
XM_043235195.1 mRNA upstream 323558 7172154 ~ 7176859 (-) True znf750
TU26334 other downstream 222812 6619253 ~ 6625296 (-) False crb3a
TU26337 other downstream 222812 6619288 ~ 6625296 (-) False crb3a
TU26094 other downstream 742118 5954148 ~ 6105990 (-) False G17468
TU27045 other upstream 1086121 7934717 ~ 7940991 (-) False LOC122341278
XR_006248283.1 other upstream 1162845 8011441 ~ 8014701 (-) True LOC122331739
XR_006248284.1 other upstream 1162855 8011451 ~ 8014701 (-) False LOC122331739
TU27061 other upstream 1359168 8207764 ~ 8209093 (-) False LOC122339740
XR_006250544.1 other upstream 1370306 8218902 ~ 8219055 (-) True LOC122342198

Expression Profile