ndel1b (ndel1b,LOC107744966,LOC107599320,LOC107670517,LOC107672491)


Basic Information

Item Value
gene id ndel1b
gene name ndel1b,LOC107744966,LOC107599320,LOC107670517,LOC107672491
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 7281684 ~ 7294005 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235621.1
ACCGACGTCAACATGACGCAATGACGCGGTGTCGTCATCTTACCGGAAGCTGAAGGGGAAATCAGTGGAGTCGCGTTGGCATTTCTCTCAGCCGACTCTCGAGCGCAGCAGACACCCAGCCTGTTCGCCGACTTCAGGAACAGGACATGATAAGGTCTCCACCATGGACACAGAGATGATGCCGAAATTCTCCTCGAAAGACGAGGAAATCGATTACTGGAAGTGCTTGTCTCTCAAATACAAGAAGAGTTATCATGACGCTCAGGAGGAGCTGCAGGAGTTCCAGGAGGGCAGTCGAGAGCTGGAGGCCGAGCTGGAGGCTCAGCTGGGGCAGGCCGAACACCGCATCCGAGACCTGCATTCAGAGAACCAGAGGCTGAAGAGCGAGGTGGACACACTCAAGGAGAAACTGGAGCAGCAGTACGCTCAGAGCTATAAGCAGATCTCCATGCTGGAGGACGACCTGGTCCAAACACGCGGCATCAAGGAGCAGCTGCACAAATATGTCAGGGAGCTGGAGCAGGCCAACGACGACCTGGAGAGAGCGAAGAGGGCCACCATCACATCTCTGGAGGACTTTGAACAGAGGTTAAACCAGGCGATAGAGAGGAACGCCTTCCTGGAGAGCGAACTGGACGAGAAGGAGTCTCTGCTGGTGTCTGTGCAGAGGCTGAAAGATGAAGCTAGAGATTTGAGGCAAGAGTTGGCAGTTCGAGAGAGGACTTCAGATGTTGCCAGGATGTCGGCCCCCAGCTCTCCCACCCTAGACATAGACAAGACAGACTCAGCCGTGCAGGCCTCTCTGTCCCTCCCAGCTACGCCTGTAGGGAAGAACATGGAGCATCCTTTCATTGCTTCTAAAGCGCTGACCAATGGCTGCGGAAGCTCCCCCCTCACACCGTCTGCACGGATCTCAGCCCTTAACATCGTCGGTGATCTTCTGCGGAAAGTTGGGGCTCTAGAGTCTAAACTAGCTGCCTGTAGGAACTTTGCCAAGGACCAGGCCGCAAGGAAAAATTACGCAACAGGAAATGGAAACCTCATCAGCAGCAACGCGACCAAGTTCTCTCATTCGCTCCACACTACGTATTTTGACAAGACGAATATGAATGGCCTGGATCCCGGCGGTCTGACGGCCATGGCTTCCCCTCGGACCGTGTCTCCTCCCGGCATGCTCCCTCTCAGCGTGTGAGAGACTTTCCCAGCGACCTCCACACAAGCTCGGACACAATGTGGAAACAGAGAGGACActtcagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagactgagatgACGTGCCTCAAGCGTGTCTGACAGATACATGTCAGGCGCGAGGGTCCGTTCCCGTGAGCGCGAGCTTCAGTTGACCTCCGTTATCACGAGGTCTCACCTAAAGCCAGCAAAACGACAAAGGTCTGAGTCGGGCCGCAGTTCTGTGAGTGTTTCAGCGTGTCGCACAATTTAAAGGGATTTTCTTTTGAGGTGGACGTCACTGTATGCTTGATCCAAATGCCATTGTTTTCAGCTTCAGCAAAGGGTCTAAATGTGGAGGtcagcagatgtttttttttttttttttttttttttttactggaatgAATGCCAAGAAAACTTGTTCAGTAGCATGGAAACATCGGCTACCTTAAAAAGCGCTCTAATGAATTATTAACCCAGTTACATCAGCTGACCGGTCACCAGTTTGCATGATGCAACCGCCATTTTAGGGCTTCAGAAGGTTTGTATGTACGTTTCTGAAACTGCACTTCAATATCCCACACTTAAGTGATGTTTGCGGTGTCTAGATTCACGAGTGGTCATGACCACAAATACTGTAGCTCTGTGCGGCGTGACCTTCCACACAGAACTTGTCAGTGGTTGTACGAACCTCATTCCTATCCCATGTGCCTCTGCTGGTGAGTTTGGCGTTCaccgtttatttatttcattcgtGGAACCCAAGCCAACTTTTGCCTATCACAGTGTTTAAGTTCAGTTCATTTACGCCAAACTTTAACATGGAGTGTAGGAGCACTTGTTCGTGTTAATTTCCCTCTATGAGTCTTTGATTTCACAGTTATCATGCACTTTGTtggccgttttttttttttttttttttgttgttgttgttgttgttgtatctCATGTATATAGATTTATAAACCTATAGCAGCGATGCCCGGTCTGTAGATAATAAAATTGGGCTGATGtgctgtttaatttatttgagaATCTTTATGGCATGTTTTGACACAATGAGTGAATTTTACATACTGTGcattggtttaaaaacatatattgagATGTAAAATTGGTTGTCTAatatgtgcaaataaataaagggaaaaatgag

Function

symbol description
ndel1b Predicted to enable microtubule binding activity. Predicted to be involved in several processes, including centrosome localization; microtubule cytoskeleton organization; and vesicle transport along microtubule. Predicted to act upstream of or within nervous system development and neurofilament cytoskeleton organization. Predicted to be located in cytoplasm; microtubule; and spindle. Predicted to be part of kinesin complex. Predicted to be active in centrosome and kinetochore. Is expressed in brain; hindbrain neural plate; notochord; somite; and trunk. Orthologous to human NDEL1 (nudE neurodevelopment protein 1 like 1).

NR:

description
PREDICTED: nuclear distribution protein nudE-like 1-B

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005819 spindle cellular_component
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16739 NDEL1; nuclear distribution protein NudE-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235621.1 True 2366 mRNA 0.48 9 7281684 7294005

Neighbor

gene id symbol gene type direction distance location
atp5pd atp5h,LOC107672438,LOC107587968,LOC107670447,LOC107599347 coding downstream 12110 7266429 ~ 7269574 (-)
znf750 LOC107711220,LOC107602728,LOC107672510,LOC107670504,LOC107744962,LOC107599316 coding downstream 104825 7172154 ~ 7176859 (-)
adgrl1a adgrl1,LOC107711219,LOC107599314 coding downstream 212979 6922197 ~ 7068705 (-)
tnfsf18 NA coding downstream 423735 6852225 ~ 6857949 (-)
tmed1a tmed1a,LOC107661822,LOC107711216,LOC107599309,LOC107602724,LOC107744983,LOC107670474 coding downstream 440794 6837465 ~ 6840890 (-)
arhgap44a si:ch211-114m9.1,LOC107599321,LOC107587964,LOC108432230 coding upstream 7525 7301530 ~ 7348021 (-)
pmp22a pmp22a,LOC107744969,LOC107711228,LOC107587961,LOC107670536,LOC107599349,LOC107672509 coding upstream 100719 7394724 ~ 7397302 (-)
cdc42ep4a cdc42ep4a,LOC107672486,LOC107711229,LOC107587960,LOC107744970,LOC107670511,LOC107599324 coding upstream 125121 7419126 ~ 7436717 (-)
sdk2a LOC107672436,LOC107744971 coding upstream 145246 7439251 ~ 7554448 (-)
aatka aatka,LOC107711236,LOC107587956,LOC107670475,LOC107567236,LOC107757347 coding upstream 431698 7725703 ~ 7763324 (-)
LOC122331317 NA non-coding downstream 47941 7220022 ~ 7233743 (-)
G17829 NA non-coding downstream 87568 7189497 ~ 7194116 (-)
G17762 NA non-coding downstream 414503 6862462 ~ 6867181 (-)
G17773 NA non-coding downstream 433088 6848108 ~ 6848596 (-)
G17769 NA non-coding downstream 439400 6841994 ~ 6842284 (-)
G17851 LOC107587965,LOC107672450,LOC107711223,LOC107744987,LOC107670478,LOC107599348 non-coding upstream 1029 7295034 ~ 7361176 (-)
G17882 NA non-coding upstream 117285 7411290 ~ 7411675 (-)
G17894 LOC107744988 non-coding upstream 289354 7583359 ~ 7583833 (-)
LOC122333960 NA non-coding upstream 302787 7596792 ~ 7601512 (-)
G17910 NA non-coding upstream 355611 7649616 ~ 7651713 (-)
LOC122341856 LOC107711206,LOC107602719,LOC107661829,LOC107711209,LOC107711210,LOC107661830,LOC107599345,LOC107602722,LOC107728674 other downstream 572303 6702503 ~ 6709381 (-)
crb3a crb3,crb3a,LOC107599343,LOC107602711 other downstream 656153 6619217 ~ 6625531 (-)
LOC122341483 LOC107661847,LOC107711201,LOC107728682,LOC107670454,LOC107599341,LOC100536643,LOC107602685 other downstream 667362 6607952 ~ 6614322 (-)
LOC122333927 LOC107599328,LOC107661850,LOC107602703,LOC107711190,LOC107599331,LOC107693566,LOC107722885,LOC107565605,LOC107673775,LOC107563216,LOC107599329,LOC107653436 other downstream 857399 6394047 ~ 6424285 (-)
LOC122333912 LOC107565605,LOC107653436,LOC107693566,LOC107599328,LOC107660297,LOC107673775,LOC107693569,LOC107693570,LOC107572241 other downstream 938016 6316265 ~ 6343668 (-)
LOC122331786 LOC107693569,LOC107722887,LOC107673775,LOC107563216,LOC107599327,LOC107572241,LOC107693566,LOC107661871,LOC107661873,LOC107599328 other upstream 602597 7896602 ~ 7913434 (-)
LOC122341278 adgrl1,LOC107711219,LOC107599314,LOC107602690,LOC107661818,LOC107744976 other upstream 626399 7920404 ~ 7945973 (-)
LOC122331739 NA other upstream 716971 8010976 ~ 8014701 (-)
fam234b srebf2,fam234b,LOC107690127,LOC107676178,LOC107572757,LOC107745393,LOC107576065,LOC107574637,LOC107721680,LOC107714892 other upstream 760034 8054039 ~ 8218088 (-)
LOC122334075 NA other upstream 764626 8058631 ~ 8171661 (-)

Expression


Co-expression Network