c3h16orf72 (zgc:66160,c2h16orf72,LOC107738628,LOC107590581,LOC107685917,LOC107690255,LOC105900007,LOC103025273)


Basic Information

Item Value
gene id c3h16orf72
gene name zgc:66160,c2h16orf72,LOC107738628,LOC107590581,LOC107685917,LOC107690255,LOC105900007,LOC103025273
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18124994 ~ 18129811 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235541.1
TCTGAAACTGCGCAGGGCAAAAGCGATCCTCAAACCGGGGTAGACAGCTACAGTCCTGGGTAATTAGATTTCGGCgtcacaaaagacaaaacattgCACCTCATTTCGTTTTAATCCAAACCCGCAGATCCAGAACTAAGGATATTAACCGGCGTTTATCTGGTATGTGATTTCAAGAACGCCAATCAACCCGCGAGAGCAAGAAATCACTCAGAAAAAGAGCAGAAGTTCACCGAAGTTTCTCAGTGTTCATCATGGAGGAGAAGAAGGAGGAGAGCGAAGCGGAGATCCACGAACACGGACCCGAACACTGGTTCTCCAAATGGGAGCGCCAGTGCCTCGCGGAGGCCGAGAGGGGAGAGCCGAGCGAGGAGGAAGTGGACCAGAACCAGGAGAAACTCTGGCATCTCTTCCAGAATTCCGCCACGGCGGTGGCGCAACTTTATAAAGATCGAGTCTGTCATCAGCAAGGACTGTCATTGTGGTCTCCATTTCAAAACGCTGCAACAGCGGTGACTAATCTTTACAAAGAAAGCGTTGATGCACACAAGAGGAGCTTTGACTTAGGAATCCAGATCGGTCATCAGCGACGTAATAAAGATGTTTTGGCCTGGGTAAAAAAGCGAAGGAGAACTATACGAAGGGAGGATTTGATAAGTTTCCTATGTGGTAAAGCGCCACCACCAAGGACTTCTAGAGCAGCCCCCAAACTGACTGTCATGTCTCCTAACCGACCACCTTCATCAGACACCGTATCATCTGTAGAGACTGATTTACAGCCCTTCTGTGAGGCCATAGCACTACATGGTTTAAGCGGAGCAATGGCCAGCATCAGCGTCCGCTCAAGCACTCCCGGCTCTCCAACGCATGTCAGCGGCAGCTCGAATGCAGGACGCAGAAGGAACGGACTGCACGATGTGGACTTGAACACTTTCATATCGGAGGAGATGGCTCTCCACCTCGGCAGCGCAGGCACCAGGAAGCGGACCTCGGTCCAGTGCACCGACGTCATCACAGACTCCCCAACCCATAAACGCAACAGAATGCTCTGAACTCTGAAGCTGTTGTTCTGTATGCtttgtgctgcttaaaataaaagccacttgatcCTCAACACTTGCGTTCCCTCAAAAGGAAACAAGGGGCGCAGTACACTTGCATATTCAGTACAGTATGCCATACAGTGGAGGCTAGTTCATGCTGCTCCATGCATGTTGACttactatttttgtttgtttttttttgcactcacCACACCACGTTATGAATTTTTTAGTTGTATGATGCTGTCAGTACccattttattgaaaacataTTAACTACTAGATTATAACATCtaaataggctttttttttctagttgaCAATATCTCCTAGACGCGCTTCCTAGTATTGCCAAGCTAATaactcaaatgtttgttttcagataACGACGTGAGCATCGGCCCATTTCCCATATTTTTTCAGTTCTCCTTCGCACTCATTGAATGGCAGTTCTGTTGTGACCGGTTTAGAAATGTGCAACGTTATTATTCATACTTGAAACTGCTGCTGATTTATACGTTTGTGTGCTCTTGAGAAGGTTGCAATAATGATTTTGCACTAACGcgttcagtttttttgttttttttaacgaaCCGTATAGACGTCGAGAGAAAGACGAGGGAAGTGAGGCTCGTGATACGATGGTGcaattttttgacatttttacatttcaaggCTGTTGTGATTTGGTTTTGGGGTTAGGCGAGTCTTTGTGCTGTAAGAACGGTGTTAAGCGGAGCTTTCTCTCAGGAGAGGTACTGAAGTAGAGAAAAACTGTGTCGTCTTGAAATTGAAGTGTCCTTTAAGTGCTTTCCAAATCCAGGTCAGAGGATTTGGAGAGCTGCACATGTACGGTCCAGCTTTGTGCTGATGTAAAGAAGTCAAGCTGGACTCGGAACCCcttaaaagtagaaatatatGATAATATGAGCTCCGGGGGAATGAAAGCGTGTGCTCTTTTGGCATTTGATGCACAAATATACCATTCTTGATTTAACgtgacagattttatttttgcccttgtcattttttacataatatacattaagTAGAAAGGCCAATTTAGTTGATGTGATCCTCACAATGACGCTTGCAGACTGAGTGTATGATATGTCAGGTAACTGGTGGTGGGGAATCATGATGTGGAGTGTATTTTCTGtgacatatttaattacaaatgttacaaaagtcttttttttttttttagtaatttgaaTACTGGATGTTTGGTTATTGATTTCATGACTAATtccataaacatttatttttcataaatgaaagCTAATATTGATTACTCCCGGAAGGAAGTGTTCGTCAGTGATCGAACTGACGTgtaatgcattttgttcatttaaaggtCAGGAGGTAAAAGATAACATTTTGCGGATGTTGGGTTGGAAAGTAAATTGTCTAGATTATCCAGAACAAACCGCAGTtgccatttttgaaaaaaaaaaaaatcagaaaaccTGCATAAGTTATAGGCTAAGTTATTAAAGATGCATTTGTATATTGACATCAATTGTGTACGTtttgtttacagtattttaacCAAAATAGAATTTGTCGCATCCAATTGAGCCTGATAACAGCCACTTGTACCTCTACTGATTAAAACAGTGATTCTTGTTTGTTCAGTAATTAAATGGATCTTTACACATCTGTTGTCATTGCAGTAGAATTTGGAGATAACTGCTTATATATGCAATGCGTTGGGagttatgtttaaaaaaaaaaaaaagagagaggcacAAGTCAGTGATTGTAAAAGCTTCTTCCTGACAATCTAAATCTTCTGGATGTACACCTGTCATGCAGAGATGGGAACTATTTCAAATCACTGTGATTCTTGTGACTTGTCATAGACGTGGACGGTGTTTGCTGTGAGGTGCTTCAGTAACTGATGCTCAGCTGCCCTCTTGTGGCAATtaatacaataacaaaaaaaataaaaataaaagatttccCTACCcaatttttgtgaaaatgaaaatatacacaaaaatacattaaatgaaaagctGCAATTCA

Function

symbol description
zgc:66160 Is expressed in female organism. Orthologous to human C16orf72 (chromosome 16 open reading frame 72).

NR:

description
PREDICTED: UPF0472 protein C16orf72 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235541.1 True 3074 mRNA 0.41 4 18124994 18129811

Neighbor

gene id symbol gene type direction distance location
dnase1 dnase1,LOC107733840,LOC107690335,LOC107568632,LOC107738635 coding upstream 89632 18032712 ~ 18035362 (+)
pde4a pde4a,LOC107596808,LOC107674699,LOC107703358,LOC108443456,LOC108257440,LOC106958375 coding upstream 98862 17980222 ~ 18026132 (+)
raver1 raver1,LOC107703359,LOC107587918,LOC107674651,LOC107596810,LOC107754048 coding upstream 154320 17954849 ~ 17970674 (+)
tyk2 tyk2,LOC107703360,LOC107587917,LOC107674650,LOC107596804 coding upstream 170662 17931705 ~ 17954332 (+)
unkl unkl,LOC107550311,LOC107674636,LOC107565763,LOC107710649,LOC107703366,LOC106601098 coding upstream 409372 17691906 ~ 17715622 (+)
atf7ip2 LOC107690257,LOC107733857 coding downstream 242946 18372757 ~ 18378482 (+)
ciita LOC107567931,LOC107733851,LOC107690261 coding downstream 296549 18426360 ~ 18437883 (+)
clec16a clec16a,LOC107690263,LOC107590577,LOC107567904 coding downstream 313560 18443371 ~ 18487548 (+)
pigq pigq,LOC107690265,LOC107733876,LOC107729199,LOC107590576,LOC107685906 coding downstream 365783 18495594 ~ 18504038 (+)
rab40c rab40c,LOC107685905,LOC107590575 coding downstream 377344 18507155 ~ 18517671 (+)
G21073 NA non-coding upstream 5568 18116538 ~ 18119426 (+)
G21045 NA non-coding upstream 57676 17980167 ~ 18067318 (+)
G21049 NA non-coding upstream 82373 18035539 ~ 18042621 (+)
G21050 NA non-coding upstream 83312 18038561 ~ 18041682 (+)
G20994 NA non-coding upstream 261913 17862067 ~ 17863081 (+)
G21076 NA non-coding downstream 28360 18158171 ~ 18158546 (+)
LOC122341661 LOC107601299,LOC107654457,LOC107720081,LOC107688136,LOC107721482 non-coding downstream 444876 18574687 ~ 18744585 (+)
LOC122331012 NA non-coding downstream 522550 18652361 ~ 18654715 (+)
G21180 NA non-coding downstream 572773 18702584 ~ 18703683 (+)
G21188 pigq,LOC107733876,LOC107690265,LOC107590576,LOC107568381,LOC107729199 non-coding downstream 724298 18854109 ~ 18854543 (+)
si:ch211-157c3.4 LOC107690254,LOC107733863,LOC107738629,LOC107568011,LOC107685921,LOC107590583 other upstream 23061 18097645 ~ 18101933 (+)
LOC122341796 pde6g,LOC107690252,LOC107733865,LOC107685924,LOC107590586 other upstream 49378 18074075 ~ 18075616 (+)
si:ch211-66e2.5 si:ch211-66e2.5,LOC107572173,LOC107703361,LOC107596817,LOC107754045,LOC107735828,LOC107674574 other upstream 195360 17920917 ~ 17929634 (+)
polr3k polr3k,LOC107703329 other upstream 218351 17904584 ~ 17906643 (+)
mrtfbb LOC107725018,LOC107572174,LOC107703365,LOC107674669 other upstream 223503 17870177 ~ 17901491 (+)
nubp1 nubp1,LOC107690260,LOC107685912,LOC107590599 other downstream 276155 18405966 ~ 18425076 (+)
G21124 rab40c,LOC107685905,LOC107590575,LOC107567894,LOC107690266,LOC103366693 other downstream 313579 18443390 ~ 18843419 (+)
G21173 LOC107601293,LOC107688129,LOC107720008,LOC107654513 other downstream 552543 18682354 ~ 18687853 (+)
G21182 LOC107654518,LOC107601298,LOC107721528,LOC107688135,LOC107720013 other downstream 596150 18725961 ~ 18732098 (+)
G21183 LOC107720013,LOC107721528,LOC107688135,LOC107654518,LOC107601298 other downstream 603354 18733165 ~ 18733765 (+)

Expression


Co-expression Network