LOC122342153 (c1qtnf6,c1qtnf6a,LOC107695119,LOC107723613,LOC107672153,LOC107583300)


Basic Information

Item Value
gene id LOC122342153
gene name c1qtnf6,c1qtnf6a,LOC107695119,LOC107723613,LOC107672153,LOC107583300
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 22912566 ~ 22918961 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235957.1
CCCAACTGCAGCTGCAAACGCAACAAGCACTATCACACAATGTTTGGGTCCCTCCTGCTCGCCTGTTTGTTTCTACATCCGGTAGTCTCCATACCTCAACCGGCCTGCCGTCGATGCTGTGACCACCTCCTACCACTTGATGACGCTGCCACGCTCAGAGAAAGCGTGCCTGCAATGCCCGAGGTCCGCACCTACATCAACATGACCATTCTCAAAGGTGACAAAGGTGATCGCGGAGAAAGGGGAACTCCTGGGAAGCCTGGGACTGAGGGTTCAGTGGGACCGCAAGGCACTGCAGGACTCAAAGGAGATAAAGGACAAGCCGGAGCTCCAGGAGATGCCTGCAAATCGCAGCATTCTGCTTTCTCAGTGGGCAGACGGAAGTCCCTTCACAGCATTGACAACTACCAGGCCCTGGTCTTCGACACCATCTTCGTGAACTCCCCCGAACACTTCGACATGTTTGCCGGGAAGTACCGCTGCCAAATCCCAGGAATCTACTTCTTCAACGTGAACATCCACACGTGGAACTTCAAGGAGACCTACCTGCACATCATGCAGAACAACAGCGAGAAGGCCATCGTCTACGCCCAGCCCAGCGACCGCTCCATCATGCAGAGCCAGAGCCTCATGCTGCCCCTGCGGGAGGGAGACGAGGTCTGGGTCCGCCTCTACAAGCGAGAGCGGGAGAACGCCATCTACAGCGACGACGTGGACATCTACATCACCTTTAACGGATACCTCATCAGACCGGAAACCGAGTGAGACCAGAAACGGGGGACGGGGGAGGAAGGCGAGGGTTTGAAAATGTGCCGAAGTGTTTGATCAGTGGAGCAGCTTTAACGAAACTGAAAAGCATCCAAACCGTTCATATTCGATTTCTGCAGTCCAAACTGAATCCCCTAATGCAGAGGAATCTGCTTTTTCTACTTCAGTGTGGGGTCTTGTGTGAAGAGAAGCGGGAAGGTTTCGCTCGGATTAGCAAAATGCTATTATATCACATTAGgacataaaactttaaaagctaGTATAGTATAAAACATCCTCAGCAGGCGTCGGCGGTAAACAAGATCCGAGCCTATCGTGCTTGGGCCGCTGTGGTTTGTTTTAAGCTTTAGCACTGTGTCATGTTGAGCAGTAGATCATTTCATTGGCTAGTTGGGTAGACATAGGTCACAGCAGCAAACACTGTGAGATTATCtaacactctcagaaaaatTTGGCGGTCTATTTCTGATCACAAGAAGGTGACTACATCCATCTTCCCTTCCCAGCACATGTTTGAGATGGTTTAAGCTTGTTTAGGACCAGCACTGAGGACCTGCTTCACTAtccatgcttcaaaacctac

Function

symbol description
c1qtnf6a Predicted to be located in extracellular region. Orthologous to human C1QTNF6 (C1q and TNF related 6).
c1qtnf6 Predicted to enable identical protein binding activity. Predicted to be located in extracellular space. Predicted to be integral component of membrane. Predicted to be part of protein-containing complex.

NR:

description
PREDICTED: complement C1q tumor necrosis factor-related protein 6

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K19470 C1QTNF1_6_8; complement C1q tumor necrosis factor-related protein 1/6/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235957.1 True 1351 mRNA 0.51 3 22912566 22918961

Neighbor

gene id symbol gene type direction distance location
hoxb1a LOC107687776,LOC107585038,LOC107717202,LOC107740618,LOC107662382,LOC107582890 coding upstream 129471 22779834 ~ 22783095 (+)
hoxb3a hoxb3a,LOC107687775,LOC107582888,LOC107740615,LOC107717222,LOC107662380,LOC107585040 coding upstream 147030 22713873 ~ 22765536 (+)
hoxb4a hoxb4a,LOC107740620,LOC107585041,LOC107662385,LOC107687779,LOC107582891 coding upstream 171895 22735939 ~ 22740671 (+)
hoxb6a hoxb6a,hoxb6,LOC107585042,LOC107662387,LOC107582892 coding upstream 190987 22719460 ~ 22721579 (+)
hoxb7a hoxb7a,LOC107740671,LOC107662388,LOC107717221,LOC107585088,LOC107687793,LOC107582958 coding upstream 200509 22707994 ~ 22712057 (+)
cbx1a cbx1a,LOC107585039,LOC107662389,LOC107687782,LOC107710057,LOC107582894 coding downstream 165185 23084146 ~ 23090936 (+)
copz2 LOC107740614,LOC107662379,LOC107585036,LOC105013247,LOC106607483,LOC106600844 coding downstream 184796 23103757 ~ 23114098 (+)
LOC122333434 LOC107710041,LOC107740651,LOC107585073,LOC107662378,LOC107687794 coding downstream 209823 23128784 ~ 23135038 (+)
atf4b atf4b,LOC107585034,LOC107740611,LOC107710053,LOC107662376,LOC107656792,LOC107582897 coding downstream 245401 23164362 ~ 23167244 (+)
LOC122341905 adsl coding downstream 252643 23171604 ~ 23181066 (+)
G22340 atp5g1,LOC107740625,LOC107662391,LOC107582887,LOC107585044 non-coding upstream 239655 22511428 ~ 22672911 (+)
LOC122341843 NA non-coding upstream 822635 22035882 ~ 22089931 (+)
G22201 NA non-coding upstream 1178144 21734138 ~ 21734422 (+)
G22198 NA non-coding upstream 1275996 21636123 ~ 21636570 (+)
G22197 NA non-coding upstream 1276487 21635744 ~ 21636079 (+)
G22554 ddx5,LOC107695114 non-coding downstream 21286 22940247 ~ 23028505 (+)
G22581 LOC107740652,LOC107662412,LOC107582935,LOC107687786,LOC107710056,LOC107578312,LOC107577241 non-coding downstream 170512 23089473 ~ 23095422 (+)
G22582 LOC107687786,LOC107710056,LOC107662412,LOC107740652,LOC107585075,LOC107582935,LOC105912825,LOC103364773 non-coding downstream 181983 23100944 ~ 23148618 (+)
G22584 NA non-coding downstream 195317 23114278 ~ 23116840 (+)
LOC122341922 LOC107695122,LOC107583308 non-coding downstream 477540 23396501 ~ 23400922 (+)
LOC122341356 il2rb,LOC107695139,LOC107583317 other upstream 4431 22899333 ~ 22908135 (+)
hoxb2a hoxb2,hoxb2a,LOC107585087,LOC107662381,LOC107582889,LOC107687781 other upstream 141964 22765647 ~ 22770602 (+)
hoxb5a hoxb5a,LOC107717200,LOC107662384,LOC107687777,LOC108413114,LOC107740619 other upstream 186408 22722022 ~ 22726158 (+)
G22329 LOC107585049,LOC107740630,LOC107662396,LOC107582928,LOC107717208 other upstream 365358 22546158 ~ 22547208 (+)
G22344 rapgefl1,LOC107585050,LOC107662398,LOC107740631,LOC107717207,LOC107667751 other upstream 382506 22528989 ~ 22530060 (+)
prr15la prr15la,LOC107710040,LOC107585086,LOC107662431,LOC107582938,LOC108412372 other downstream 239258 23158219 ~ 23163716 (+)
dnal4a dnal4a,dnal4,LOC107662365,LOC107585028,LOC107690743,LOC107740666,LOC107710037 other downstream 419418 23338379 ~ 23343640 (+)
LOC122341898 LOC107662363 other downstream 425003 23343964 ~ 23361942 (+)
LOC122341907 NA other downstream 484480 23403441 ~ 23408814 (+)
zmp:0000000912 LOC107748810,LOC107695116,LOC107583322,LOC107695109,LOC107583307,LOC107709636,LOC107672113,LOC107602301 other downstream 505660 23424621 ~ 23431766 (+)

Expression


Co-expression Network