LOC122341907


Basic Information

Item Value
gene id LOC122341907
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 23403441 ~ 23408814 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235600.1
GTATTTGGTGAGACAGTTtaaatttcagtttcatttccaTGTATCTGAGACAAATACGGTGCAAGAACGTCTCCTGTAGGCGCTCTTTTGCGCAACAAAGGGGAGGATTTGTACTACAGTCGGTTCAAaGGAAGAGTGAGGCGGTCGCTGCTGAAAGGTGTGGTTAGGtggagtgtgtttgtatgttcaTGATGATCTGTGCTTAGAGCGAGGAAACAGACAGCAAGTCATCAACACAGCAAGAGAAGCGCAGGACATGGAAGGAGAGTCGGACACAGACACGACCTCTGACTCAAAATCTGAATCAGATTATGATTTCGAGAGCAGCACAGAATCTGACAGTCTGAGCGAGAACGACAGCGCAGGAGGGAACAAGAGGAAACTGAGGCCATCTTCCCACTGTACGCCCAAGAAGAGAAGATCTGATGACTACAGCCAGTATTTGAAACGACAAATCGGAAACAAATCTGAGCTTCCCGTCACATGTGGAGATAAAGACGGCATCCTGCATGTGGACATGTATAACGACTTGAAGAAGTGCATCTTCAGCGAAGACCAGTGGTTCAAGCCCAGCGAATTTGAGAGGTTTGGAGGAAAAGAGAGGAGCAAAAAATGGAAGGCTAGCATCTTTTGTGAAAATATTCCACTCCAGAAACTCATAGAGGCTGGACTTTTGTCATCCTTTAAGAAAAGCCAGTCTCCGAATAAACAGATCGATTCTCCTGACTCCTCTGACGCTGACTCTCCTGACTCCTCAACTGTTGCTAACAGACTCAGAAAAGGAAAGaaacAGCTGTTGCCCTCCTGCTCCGAATCAAACAGCAGGACCAGTGATGACGATAACGATATCACCGACATGAGTGCGTTTGAAGGTTCATTTTTACCTGTCACCTGTGGTTCTGGCTCTGGCATCCTGCACAAATATCGCTTCGCCACAGGGCGTTGTGGGAGATGCATAAGAACAAAAGACTTCTGGCTGACACCTGAGGATTTCATCAGACTGAACAAGCCAGGTGGAATGTGGAGAAGAGACATTTTATCCAATGGGATACCTCTGGGAAAACTTATAATGaaaaaagttttgcaaCTGCATATGATCGCCTGCGATTGTAAGATGTGTAAAGACCAGGACCAGGACCTACAGAACGATGACGTGTGTCACGTGTGTGACTCTGAGGGAGATCTCGTGTGTTGTGACGAGTGTCCGCGAGCTTTTCATTCGCTCTGTCACCTGCCTGCCGTACAAGAAGACTCGTTAGGAAACCAATGGAGCTGCACTTTTTGTGTGATGAAGAAGATGGGAGGCTCCGATCAAAAGACCACGCGGGACGTTTTGAGCAGTCCGGTCTCTCAGTACACGCTGCACTGCCAGTACCTGCTGTTACACCTGCTACACGAGAGCAAGACCAATGTCCCAGGATTCAGTCAGAACATTACTGCTCTGGACAGAATGAAGATGAACTTGGCGAATAATACTTATCAAACAGTACAAGCGTTTGTCACAGATACCGAACTGGTTTTCAACAGCTGGGACACTTCCAGTGAAGACAGCGACTTGAGCAGAAAGGCCTCGAGGCTGAAGGAAGCGTTCAAGAGGGAGTTTGAAACCGTCTTCAAGCTCCTTTAGCATCAGGCTGTGGGTTGTTTGTTAACACAACTGACAGCTAAATCAGTAAATGTACATCAGCAAATTAACCCAAAATTGTCTGATTTATAGTGATATATTTCTAAACTGAGatagaattaatttaaacatgaaaaataacatacttGATTTAGTTTTGTCActtgttgtattttttcttattattattttttaaacttcaataaactatttgttttgtatta
>XM_043235602.1
GTATTTGGTGAGACAGTTtaaatttcagtttcatttccaTGTATCTGAGACAAATACGGTGCAAGAACGTCTCCTGTAGGCGCTCTTTTGCGCAACAAAGGGGAGGATTTGTACTACAGTCGGTTCAAaGGAAGAGTGAGGCGGTCGCTGCTGAAAGGTGTGGTTAGGtggagtgtgtttgtatgttcaTGATGATCTGTGCTTAGAGCGAGGAAACAGACAGCAAGTCATCAACACAGCAAGAGAAGCGCAGGACATGGAAGGAGAGTCGGACACAGACACGACCTCTGACTCAAAATCTGAATCAGATTATGATTTCGAGAGCAGCACAGAATCTGACAGTCTGAGCGAGAACGACAGCGCAGGAGGGAACAAGAGGAAACTGAGGCCATCTTCCCACTGTACGCCCAAGAAGAGAAGATCTGATGACTACAGCCAGTATTTGAAACGACAAATCGGAAACAAATCTGAGCTTCCCGTCACATGTGGAGATAAAGACGGCATCCTGCATGTGGACATGTATAACGACTTGAAGAAGTGCATCTTCAGCGAAGACCAGTGGTTCAAGCCCAGCGAATTTGAGAGGTTTGGAGGAAAAGAGAGGAGCAAAAAATGGAAGGCTAGCATCTTTTGTGAAAATATTCCACTCCAGAAACTCATAGAGGCTGGACTTTTGTCATCCTTTAAGAAAAGCCAGTCTCCGAATAAACAGATCGATTCTCCTGACTCCTCTGACGCTGACTCTCCTGACTCCTCAACTGTTGCTAACAGACTCAGAAAAGGAAAGaaacAGCTGTTGCCCTCCTGCTCCGAATCAAACAGCAGGACCAGTGATGACGATAACGATATCACCGACATGAGTGCGTTTGAAGGTTCATTTTTACCTGTCACCTGTGGTTCTGGCTCTGGCATCCTGCACAAATATCGCTTCGCCACAGGGCGTTGTGGGAGATGCATAAGAACAAAAGACTTCTGGCTGACACCTGAGGATTTCATCAGACTGAACAAGCCAGGTGGAATGTGGAGAAGAGACATTTTATCCAATGGGATACCTCTGGGAAAACTTATAATGaaaaaagttttgcaaCTGCATATGATCGCCTGCGATTGTAAGATGTGTAAAGACCAGGACCAGGACCTAAACGATGACGTGTGTCACGTGTGTGACTCTGAGGGAGATCTCGTGTGTTGTGACGAGTGTCCGCGAGCTTTTCATTCGCTCTGTCACCTGCCTGCCGTACAAGAAGACTCGTTAGGAAACCAATGGAGCTGCACTTTTTGTGTGATGAAGAAGATGGGAGGCTCCGATCAAAAGACCACGCGGGACGTTTTGAGCAGTCCGGTCTCTCAGTACACGCTGCACTGCCAGTACCTGCTGTTACACCTGCTACACGAGAGCAAGACCAATGTCCCAGGATTCAGTCAGAACATTACTGCTCTGGACAGAATGAAGATGAACTTGGCGAATAATACTTATCAAACAGTACAAGCGTTTGTCACAGATACCGAACTGGTTTTCAACAGCTGGGACACTTCCAGTGAAGACAGCGACTTGAGCAGAAAGGCCTCGAGGCTGAAGGAAGCGTTCAAGAGGGAGTTTGAAACCGTCTTCAAGCTCCTTTAGCATCAGGCTGTGGGTTGTTTGTTAACACAACTGACAGCTAAATCAGTAAATGTACATCAGCAAATTAACCCAAAATTGTCTGATTTATAGTGATATATTTCTAAACTGAGatagaattaatttaaacatgaaaaataacatacttGATTTAGTTTTGTCActtgttgtattttttcttattattattttttaaacttcaataaactatttgttttgtattaa
>XR_006250499.1
GTATTTGGTGAGACAGTTtaaatttcagtttcatttccaTGTATCTGAGACAAATACGGTGCAAGAACGTCTCCTGTAGGCGCTCTTTTGCGCAACAAAGGGGAGGATTTGTACTACAGTCGGTTCAAaGGAAGAGTGAGGCGGTCGCTGCTGAAAGGTGTGGTTAGGtggagtgtgtttgtatgttcaTGATGATCTGTGCTTAGAGCGAGGAAACAGACAGCAAGTCATCAACACAGCAAGAGAAGCGCAGGACATGGAAGGAGAGTCGGACACAGACACGACCTCTGACTCAAAATCTGAATCAGATTATGATTTCGAGAGCAGCACAGAATCTGACAGTCTGAGCGAGAACGACAGCGCAGGAGGGAACAAGAGGAAACTGAGGCCATCTTCCCACTGTACGCCCAAGAAGAGAAGATCTGATGACTACAGCCAGTATTTGAAACGACAAATCGGAAACAAATCTGAGCTTCCCGTCACATGTGGAGATAAAGACGGCATCCTGCATGTGGACATGTATAACGACTTGAAGAAGTGCATCTTCAGCGAAGACCAGTGGTTCAAGCCCAGCGAATTTGAGAGGTTTGGAGGAAAAGAGAGGAGCAAAAAATGGAAGGCTAGCATCTTTTGTGAAAATATTCCACTCCAGAAACTCATAGAGGCTGGACTTTTGTCATCCTTTAAGAAAAGCCAGTCTCCGAATAAACAGATCGATTCTCCTGACTCCTCTGACGCTGACTCTCCTGACTCCTCAACTGTTGCTAACAGACTCAGAAAAGGAAAGaaacAGCTGTTGCCCTCCTGCTCCGAATCAAACAGCAGGACCAGTGATGACGATAACGATATCACCGACATGAGTGCGTTTGAAGGTTCATTTTTACCTGTCACCTGTGGTTCTGGCTCTGGCATCCTGCACAAATATCGCTTCGCCACAGGGCGTTGTGGGAGATGCATAAGAACAAAAGACTTCTGGCTGACACCTGAGGATTTCATCAGACTGAACAAGCCAGGTGGAATGTGGAGAAGAGACATTTTATCCAATGGGATACCTCTGGGAAAACTTATAATGaaaaaagttttgcaaCTGCATATGATCGCCTGCGATTGTAAGATGTGTAAAGACCAGGACCAGGACCTACAGAACGATGACGTGTGTCACGTGTGTGACTCTGAGGGAGATCTCGTGTGTTGTGACGAGTGTCCGCGAGCTTTTCATTCGCTCTGTCACCTGCCTGCCGTACAAGAAGACTCGTTAGGAAACCAATGGAGCTGCACTTTTTGTGTGATGAAGAAGATGGGAGGCTCCGATCAAAAGACCACGCGGGACGTTTTGAGCAGTCCGGTCTCTCAGTACACGCTGGTGATGTTTATCACTGCCAGTACCTGCTGTTACACCTGCTACACGAGAGCAAGACCAATGTCCCAGGATTCAGTCAGAACATTACTGCTCTGGACAGAATGAAGATGAACTTGGCGAATAATACTTATCAAACAGTACAAGCGTTTGTCACAGATACCGAACTGGTTTTCAACAGCTGGGACACTTCCAGTGAAGACAGCGACTTGAGCAGAAAGGCCTCGAGGCTGAAGGAAGCGTTCAAGAGGGAGTTTGAAACCGTCTTCAAGCTCCTTTAGCATCAGGCTGTGGGTTGTTTGTTAACACAACTGACAGCTAAATCAGTAAATGTACATCAGCAAATTAACCCAAAATTGTCTGATTTATAGTGATATATTTCTAAACTGAGatagaattaatttaaacatgaaaaataacatacttGATTTAGTTTTGTCActtgttgtattttttcttattattattttttaaacttcaataaactatttgttttgtattaaaa

Function

GO:

id name namespace
GO:0002376 immune system process biological_process
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235600.1 False 1848 mRNA 0.44 15 23403441 23408811
XM_043235602.1 False 1846 mRNA 0.44 15 23403441 23408812
XR_006250499.1 True 1862 transcript 0.44 15 23403441 23408814

Neighbor

gene id symbol gene type direction distance location
LOC122341912 LOC107695123 coding upstream 2519 23397759 ~ 23400922 (+)
LOC122341358 LOC107585025,LOC107716530,LOC107662363 coding upstream 11254 23372660 ~ 23392187 (+)
LOC122341901 LOC107740603,LOC107662366,LOC107690737,LOC107602322,LOC107585068 coding upstream 66956 23326597 ~ 23336485 (+)
LOC122341903 LOC107740604,LOC107662367,LOC107585029,LOC107710048,LOC107602318,LOC107690738 coding upstream 83609 23310836 ~ 23319832 (+)
pvalb6 LOC107585030,LOC107662370,LOC107690741,LOC107602319,LOC107710050,LOC108258409,LOC108412390 coding upstream 102684 23262991 ~ 23300757 (+)
si:dkey-68o6.8 NA coding downstream 1805 23410619 ~ 23412806 (+)
sp100.4 LOC107748809,LOC107583267 coding downstream 6613 23415427 ~ 23420974 (+)
slc25a17 slc25a17,LOC107748783,LOC107672147,LOC107709637,LOC107695117,LOC107602302 coding downstream 29584 23438398 ~ 23444074 (+)
mrtfaa LOC107695127,LOC107723606,LOC107602328 coding downstream 36172 23444986 ~ 23480291 (+)
cbx7a LOC107695130,LOC107748788,LOC107583303,LOC107602332,LOC107672137,LOC107723608 coding downstream 173617 23582431 ~ 23587628 (+)
LOC122341922 LOC107695122,LOC107583308 non-coding upstream 2519 23396501 ~ 23400922 (+)
G22582 LOC107687786,LOC107710056,LOC107662412,LOC107740652,LOC107585075,LOC107582935,LOC105912825,LOC103364773 non-coding upstream 254823 23100944 ~ 23148618 (+)
G22584 NA non-coding upstream 286601 23114278 ~ 23116840 (+)
G22581 LOC107740652,LOC107662412,LOC107582935,LOC107687786,LOC107710056,LOC107578312,LOC107577241 non-coding upstream 308019 23089473 ~ 23095422 (+)
G22554 ddx5,LOC107695114 non-coding upstream 374936 22940247 ~ 23028505 (+)
LOC122341920 LOC107672134,LOC107602299 non-coding downstream 3999 23412813 ~ 23414909 (+)
G22754 NA non-coding downstream 154226 23563040 ~ 23563246 (+)
G22757 NA non-coding downstream 166084 23574898 ~ 23578241 (+)
G22758 NA non-coding downstream 169662 23578476 ~ 23646166 (+)
G22800 NA non-coding downstream 259091 23667905 ~ 23672990 (+)
LOC122341898 LOC107662363 other upstream 41499 23343964 ~ 23361942 (+)
dnal4a dnal4a,dnal4,LOC107662365,LOC107585028,LOC107690743,LOC107740666,LOC107710037 other upstream 59801 23338379 ~ 23343640 (+)
prr15la prr15la,LOC107710040,LOC107585086,LOC107662431,LOC107582938,LOC108412372 other upstream 239725 23158219 ~ 23163716 (+)
LOC122341356 il2rb,LOC107695139,LOC107583317 other upstream 495306 22899333 ~ 22908135 (+)
hoxb2a hoxb2,hoxb2a,LOC107585087,LOC107662381,LOC107582889,LOC107687781 other upstream 632839 22765647 ~ 22770602 (+)
zmp:0000000912 LOC107748810,LOC107695116,LOC107583322,LOC107695109,LOC107583307,LOC107709636,LOC107672113,LOC107602301 other downstream 15807 23424621 ~ 23431766 (+)
c1qtnf6a c1qtnf6,c1qtnf6a,mgat3a,LOC107695119,LOC107723613,LOC107672153,LOC107583300,LOC107748818,LOC107580620,LOC107695120 other downstream 300689 23709503 ~ 23721719 (+)
LOC122342055 pik3r6,LOC107719336,LOC107703883,LOC107563351,LOC107728708,LOC107583295 other downstream 631088 24039902 ~ 24051913 (+)
G22958 NA other downstream 686210 24095024 ~ 24097159 (+)
G22996 LOC107703883,LOC107563351,LOC107719336,LOC107583295 other downstream 1025241 24434055 ~ 24439463 (+)

Expression


Co-expression Network