LOC122341358 (LOC107585025,LOC107716530,LOC107662363)


Basic Information

Item Value
gene id LOC122341358
gene name LOC107585025,LOC107716530,LOC107662363
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 23372660 ~ 23392187 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043234706.1
AGGTCAACATTCGCTTTCCCTACATCACTTCCGTACTCTTCTGTCTTTATGAGGCAGATTGTCCCATACATCTAGGCGGGAGATTTGGAAAGAGACCTTTCTGTTTCACCACTCTTCGTGTCAAATACACAGACCTGTTGAAACGGCTCGGGCGGTGACAGATCGAATTAATGGGAGTCGGCACCCAAATGGACCCGTTAGACTTTCTAACGAATGAAGAGTTGCTGCCTTTCTTCCACCGGAAAAAGACAGAGATTTCGTGCTTAGAAGAACCGCACAGACTTCTCACTCAGCTGCGAGACCACGATCTGGTGCCGGAGAAACTTTACGAGAGTGTGAAAAAGATGCGTTCTCGTAAGCAAAAGGAGAAGGGCTTCTATGAGGTTCTGGACTGGGTGGAGAAAAACAGATCTGAGTATATACATCGGTTCTGGCGCTGTGTGTTTGAAGATCATATCCTGCAGCTGTATCCAACACTACGCATCCTCAGAAACAGTCTGCAGGAcgGCACTTTCAAACTCTATGAGAAACCTCCGGATATCGAGACAGCGGAGGAGTGTGAAAGAAAGGCAGAAAAAGGAAAGGAGAAGAGCTACAAAAGAAGGAGAAGTAAAGATGATAGAAGTAGTGAGAATAGTGATGATCCTGGTCCTTCCTCTGCGTCCACACCCAAGCGAAAGAAACCGGACAAAAAACCCTCGTTCTcatCTCCTGTGAAGAAAGGTGACAAGCAAGAAATTTGGACATGGCCTATTTATAAAACTCAGCTGCCTGTAACCTGTGGGGATAAAGAAGGCACTCTCTATCGGGAGAAACTGCCCAGAGGGGAAGAGTGTATCTTGTCCCAGGGACTCTGGTTCACCCCAAATGACTTTGAGAAGTTTGCAGGGAAGGAAAAGTGCAAAAACTGGAAAGTCAGCATCCGCTGCAGAAACACGCCGCTTAAGAAACTCATCGAAGAGGAGCATCTTCGGTGTCCACCGATGGAGAGAAGAACGAGAACATGTGTCCAAACAAACACGAATGGGAGGTTTCCTGTCAGCTCATCTGAGAGCTCCGGTGCAGATACGAGCTCTGGTTCAAGGGAGgaaagtgatgatgatgatttccAGGAGCAGGGAGGGAGAAGAGGAGGAACAGAGTTAAGAGAGAGAGTTGAAGAAGAAGACATGTCAgatctgtctgtttttcaggCTCCCTCTTTACCGGTCACCTGTGCTTCACTTACTGGGACTCTGTACAAAAACAGGTTTGCGTCAGGGTATCGTGGGAAGTGTATACGTACTGAGGAAAGATGGTTCACTCCGGAGGAATTTGTAAAGCAGGAGCCGACTCTCACTGATGGACACTGGAAGAAAGACATACTGTGCCATGGAAAAACACTCAACTTTTTACTCCAGAAAGACATCTTGTGCATCCATTCacttctgtgtgtatgtgtgaaatgCAGTATTCGAAAGGAAGATATGATGGCCCAGAACAATGATGATGAGTGTTATGTGTGTCGCTCTATGGGAGATCTCGTGTGTTGTGACGAGTGTCCACGAGCTTTTCATTCAGACTGTCACCTACCTGCTGTACCTGAAGACTCATCTGgGGAATGGATTTGTACCTTCTGCGTGTTCAGAAACAGCCAGCAATGGCGTGACTCCAGTAACGTGTCTGAACAAGAAGCTTTCGACGCCCCAATCTCTCAACACATATTGCACTGCCACTACCTCCTGTTATGTGTGTACAGACAGGACATCCAGAAGGTGTTTGTTGAGGACCCACGACCAACGGTGCCCAGATACTCTGAGTTCATAACTCAGCCGATGTGGCTGGACAGAATAAAGCAGAAGTTGGAAAGTGGCGAGTATCGGACGATAGAAGCGTTCGTCTCTGACTTTCGACTCATTTTCAGCAACTGCAGCAAGTTCAATAAGGACAATGACTTTGGCCGAATGGGTGCCAGCCTGAAGCAAATATTTGAGGAAGAGTTCAGGAAAATCTTCAGTATTCAAATCAATGGCTGTGGCAGGATGGATGATGAATCATTTCCAGATTCAAAGAAGGATGGGAGAAGCTCATCAGAATCTGACTGGATTGAGGAGAcggaaaaaataaaaggaacacAAGgggtaaaaagaaagaagaatcaACAAAATGGTAACAAGAAGAAAATAGCCCGATGTAGAAACTCTAGGCTTTCGGTGGCAGACCTAACAGATGTCTTTCAAGAGGCCAGAAACAAGGACCAGATGGCTGTCCATTGTGGAAAAATGGCAGGatgtctgtacagaataaaatatgacaatgGAGAGGAGTGTATTTCATGTAAAGAGAAATGGTTTACTCCCGCACAGTTTGAGAAGTTCGCAGGAAAAGGGCATTATAAGAAGTGGAAGGATAGCATCTATTACAAGTCATCACATGGCCTTCAAGTTAGATTACAGAAACTCATACAAAGTGGGAGTCTTTCAGAGTTTGGACAACACAAGGAGTCAGTTAGAGAGGGGACACAGACAGAATCCAGTACAGGATTGTTTTCCAAGACTCTGACAACACCTGGAATTGAAAAGGAAATAAACCTGCCGGACAATTCTTCAGATGAGTCTGTATCTGTAAGGCTCAAAATGGTGACACAGACAGAATCCCGTAAAAGATTGTTCTCCAGGAGTCtgaaaaaaactgtgtgtggAATTGAAGGGGAAACAATAGAGCTGGACAGTTCTTCAGATGAGTCTGTATCTGTTGCTGAAAGAGTTAAAAAGAACAGGAGAGAATCTGTCATTTCAGCTCAAGAATATATTGTCATTGTTGAAGATACAGACAGTTCTTCGGATGAGTCTGTGTCTGTTGCTGAAAGAGTCAAAATGAACAGGAGAGAATCTGTCATTTTAGCTAGACCAGTccataaaaacataacagaaCCGGCAAAATTTCCTGCCAGTACTAGAGATTCACCTGCACTCCCCACTGTTGCTTCAGAAACTGCAGAATCAAGACCACTGAGGGAGTCAACTAGAGAGgcccagaaaatacagttttccaAGAGTTTGAAAATACCCGTGTGTCGAATTGAAGAGGAGGCATTCCAGCTGAATAAGTCTGGATCTGTTGCTGAAAGAGTCAAAATGGCACGGAACAGGAGAGAATCTGTGATTATAGCTGAACCAGTAGAACCGGTAGAATCTACTGCCAGTGCTAGAGATTCCCCATCACCTTCCACTGATGCTACAGAACCTGCAGTATCTTCTGTCGTAGAGGATGCAGATCAGATCACAGATGAAGAAGCAGatgaagcagcagcagctcagCTTGACTTCAACGATTCTCCTGCTGATGCTACAGAACCTGTAGTATCTTCATTTGTAGAGGAGCCTGATCAGACCCCAGATGAAGCAGCAGCACATCAGCTGAACTTTAGTGAATCTCCTACTGATGTTAAAGAACCTGCAGTATCTTCTGTTGTAGAGGAGGCCAGTAAGACAACAAATAAACCAGCAGAAGCTCAGCTTAACGTCAGCGATTCTCCTGTTGATGCTACAGAACCTGCAGTATCTTCTGTCGTAGAGGAGGCTAATCAGATCACAGATGAAGCAGgtgaagcagcagcagctcagCTTGACTTCAACGATTCTCCTGCTGATGCTACAGAACCTGCAGTATCTTCACTTGTAGAGGAGCCTGATCAGACCACAGATGAAGCAGCAGCACATCAGCTGAACTTCAGTGAATCTCCTACTGATGTTAAAGAACCTGCAGTATCTTCTGTTGTAGAGGAGGCCAATAcgaaaacaaataaaccagCAGCAGCTCAGCTTAACTTCAACGATTCTCCTGTTGATGCTACAGAACCTGCAGTATCTTCTGTCGTAGAGGATGCAGATCAGATCACAGATGAAGAAGCAGatgaagcagcagcagctcagCTTAACTTCAACGATTCTCCTGTTGATGCTACAGAACCTGCAGTATCTTCACTTGTAGAGGAGCCTGATCAGACCACAGATGAACCAGCAGCATCTCAGCTTAACTTCAACGATTCTCCTGCTGATGCTACAGAACCTGCAGTATCTTCTGTCGTAGAGGAGGCTAATCAGACCACAGATGAAGCAGCAACAGATCAGCTGAACTTTAGTGATTCTCCTGCTGAAGCTACAGGACCTGTAGTATCTCCTATAGAGGAGCCTGATTGGATCGCAGATGAAGCAGCGGGTGAAGCTGCAGCTCCTCAGATGAATTTCAGTGGTTCTTCTGCTGAATGGCAGGACCCTGTTGTTTCTGAAGGGACTGAGAGGACAGACCAGATGcagttatttacatttctaGGAAATCAGTTCAATACCATACACGAGACCCTAAAATCAATTGATTTGTCTTTAAAGAAGCTGATGGAAAAACAGTCACAAGACACACTGCCTCAATATAGGTATCTAATTCCTGATTTTATTGGAAATTCACAAATTCACTCCTTAGTCAAGAAGGAGCCAGTCATTGAGGAATCAATACTGTGATCTAATAGaggttataaataaataaatattattattatat

Function

NR:

description
PREDICTED: nuclear body protein SP140-like protein isoform X3

GO: NA

KEGG:

id description
K24504 SP140; nuclear body protein Sp140

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043234706.1 True 4539 mRNA 0.45 32 23372660 23392187

Neighbor

gene id symbol gene type direction distance location
LOC122341901 LOC107740603,LOC107662366,LOC107690737,LOC107602322,LOC107585068 coding upstream 36175 23326597 ~ 23336485 (+)
LOC122341903 LOC107740604,LOC107662367,LOC107585029,LOC107710048,LOC107602318,LOC107690738 coding upstream 52828 23310836 ~ 23319832 (+)
pvalb6 LOC107585030,LOC107662370,LOC107690741,LOC107602319,LOC107710050,LOC108258409,LOC108412390 coding upstream 71903 23262991 ~ 23300757 (+)
pdgfbb LOC107710051,LOC107582898,LOC107740670,LOC107656789,LOC107585031,LOC107662372 coding upstream 140360 23221703 ~ 23232300 (+)
tmem150b tmem150b,LOC107662375 coding upstream 175566 23193030 ~ 23197094 (+)
LOC122341912 LOC107695123 coding downstream 5572 23397759 ~ 23400922 (+)
si:dkey-68o6.8 NA coding downstream 18432 23410619 ~ 23412806 (+)
sp100.4 LOC107748809,LOC107583267 coding downstream 23240 23415427 ~ 23420974 (+)
slc25a17 slc25a17,LOC107748783,LOC107672147,LOC107709637,LOC107695117,LOC107602302 coding downstream 46211 23438398 ~ 23444074 (+)
mrtfaa LOC107695127,LOC107723606,LOC107602328 coding downstream 52799 23444986 ~ 23480291 (+)
G22582 LOC107687786,LOC107710056,LOC107662412,LOC107740652,LOC107585075,LOC107582935,LOC105912825,LOC103364773 non-coding upstream 224042 23100944 ~ 23148618 (+)
G22584 NA non-coding upstream 255820 23114278 ~ 23116840 (+)
G22581 LOC107740652,LOC107662412,LOC107582935,LOC107687786,LOC107710056,LOC107578312,LOC107577241 non-coding upstream 277238 23089473 ~ 23095422 (+)
G22554 ddx5,LOC107695114 non-coding upstream 344155 22940247 ~ 23028505 (+)
G22340 atp5g1,LOC107740625,LOC107662391,LOC107582887,LOC107585044 non-coding upstream 699749 22511428 ~ 22672911 (+)
LOC122341922 LOC107695122,LOC107583308 non-coding downstream 4314 23396501 ~ 23400922 (+)
LOC122341920 LOC107672134,LOC107602299 non-coding downstream 20626 23412813 ~ 23414909 (+)
G22754 NA non-coding downstream 170853 23563040 ~ 23563246 (+)
G22757 NA non-coding downstream 182711 23574898 ~ 23578241 (+)
G22758 NA non-coding downstream 186289 23578476 ~ 23646166 (+)
LOC122341898 LOC107662363 other upstream 10718 23343964 ~ 23361942 (+)
dnal4a dnal4a,dnal4,LOC107662365,LOC107585028,LOC107690743,LOC107740666,LOC107710037 other upstream 29020 23338379 ~ 23343640 (+)
prr15la prr15la,LOC107710040,LOC107585086,LOC107662431,LOC107582938,LOC108412372 other upstream 208944 23158219 ~ 23163716 (+)
LOC122341356 il2rb,LOC107695139,LOC107583317 other upstream 464525 22899333 ~ 22908135 (+)
hoxb2a hoxb2,hoxb2a,LOC107585087,LOC107662381,LOC107582889,LOC107687781 other upstream 602058 22765647 ~ 22770602 (+)
LOC122341907 NA other downstream 11254 23403441 ~ 23408814 (+)
zmp:0000000912 LOC107748810,LOC107695116,LOC107583322,LOC107695109,LOC107583307,LOC107709636,LOC107672113,LOC107602301 other downstream 32434 23424621 ~ 23431766 (+)
c1qtnf6a c1qtnf6,c1qtnf6a,mgat3a,LOC107695119,LOC107723613,LOC107672153,LOC107583300,LOC107748818,LOC107580620,LOC107695120 other downstream 317316 23709503 ~ 23721719 (+)
LOC122342055 pik3r6,LOC107719336,LOC107703883,LOC107563351,LOC107728708,LOC107583295 other downstream 647715 24039902 ~ 24051913 (+)
G22958 NA other downstream 702837 24095024 ~ 24097159 (+)

Expression


Co-expression Network