sp100.4 (LOC107748809,LOC107583267)


Basic Information

Item Value
gene id sp100.4
gene name LOC107748809,LOC107583267
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 23415427 ~ 23420974 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235605.1
GCCAAAATAATGATATGCTTTTGTGTGGATGTTTTCTGAGGTTATAGTTTCTTCAGTGGACCGGGTGGCTGCTTTCAGTTTCGATAGCGCGTTAGAGTGGGACGTACACTTCCTGCTGTTCAAATAATGCGAAAGATACCACAGTCTCCTTCGTGAAATGACGCTTTTAAAACATCCAAGAATCAGACTGACTGAAATGAAGCGATGAAACACAGCAGGATGAAGAAACGAAGCTGTAAGAAGAGAAAGCAGACggggtcttcctcccactctAAACATAAGAAGAGGAAACGAGTCGAGAGACAAAACTGCCCTAaaACACTGCCAGCACAAAACAACACTCTGAACAAAAACCAGCTTCCCGTTACGTGTGGCTATAAAGAAGGTGTCCTGTATTTGAAGAAGTTTTATAATAAGCAGAAGTGCATCTTCAGTGAGGAACAGTGGTTCAAGCCCACTGAGTTTGAGAGGTTTGGTATGAAGGAGAAGAACAAAAAGTGGAGGACCAGCATCCTTTGCAGTGGGATTCCACTCCAGAGACTCATAGAGGATGGATTTCTTTCAGctacaacctttaaaaaaagcagagtTCAGGATGCAAAGaaaaATAGAAGTCAAGTGGGTTTGAAAAAACAGGAATCACATGAAAGGATTGAAAACAATCAAGACGACGATgacaataatgatgatgatgatgatgatgatgatgatgatgatgatgaagctACTGACATGGGCGTCTTTGAAGGTCCAGTCCTACCTGTTACCTGTGGTTCTGATTCTGGCATTCTACACAAGTATCGATTTTCCACAGGGCGCTGTGGGAGATGCATAAGAACAGAGAACTTCTGGCTGACGCCTGAGGATTTCATCAAATTGGGCAAACCAGAGGGAACATGGAAGAAAGACATCGTGTCCCACGGAGTGCCTCTTGGGAAGCTTATAacgAAGAGAGCTTTGGAGCCACATGCAGTTAACTGTGATTGTGAGATCTGCCAAGAACCGGATCAGAACCTACTGAATGATGACGTGTGTTTCGAGTGTAATTCTGAGGGAGATCTTGTGTGTTGTGACGAGTGTCCGCGAGCTTTTCATTCGCTCTGTCACATACCGGCTGTACATGGAGACTCATccggAAGCCAATGGAGCTGCACATTTTGCGTGATGAAGACTGCGAAAAGATCTGCTCAGAGGACCCAACAGGATGTTTTGAGCAGTCCAGTCTCTCAGTACACACTGCACTGCCAGTATCTGCTGCTACACCTGCTACctcTTGGTGTGCATGCGTGTGACGTCTACACTGCTGGTGCCCAGGGTCCGGGAGACAGTGAGAACATCTGTGGTCCCATGATGCTGGGCAGAGTGAAGCTGAACCTGGAGAACAACGACTATCAAACAGTGCAAGAGTTTATCAAAGCTATTGAATACGTGTTCCACCACTGCACCGCCAACAGGGATAATGACTTCAGTAGGATGACATCTAGGCTTAAGGAACTGTTTGAAAGCGTCTTTGAGCCCTTGTGATATCACGCTCTAAAAAGCAGTCCTTTGTATAAATACAGTACGACAAATATTTATAGAGCATCACAAAGGCTTTCAGTTGTAAACAATTACTTGCAGTGCATTCAACTCACcgccttttgaaaaaaaaagtttaattccAAGTATATGATGTACATGATGGGTCCAAAACCGATATGTTTTTCgttgttgctgctgttgtttgTGTCTTGCATTGAATGTGGTGAGGTGGGGaatatttattagtattctTCTCATTAAggtaaataaaacagcaatggTTATctcataaaacagaaaaagagaatgtctgttagtgtgtgtgtgtgtttcggcTTTTTAAATATGCCAAAAGTAttacttatgtttttataatcGCCTCTCATTTGATGCTGTCAAAAAATATGGCACTTCCCTGACTAGGTTTTTCTGTGTCAGAAGTGTGTAGGACGGAGATACCAACCAGTAGATACCATTTCTATTCAAGTAATACAgacgtttcttttaaaaatttgttttgcaatttatttctaaTGCCAGTGGCAGGAAATGCGCGCCTTAATgactgtgtcatttttttttctgtgaaacaaagGTTAAATATGTCCGGAATACCtataatgaagaaaaattaatttctgttcCTCTGTAAGGTAGTGATTTTCTATTAGTTTGCCTAGCGGTCAAAATGAGATATCACCAGGGGTCCTGGAAGAAAAAGTCATATGTACCTTAAATATACAGGATGGGGATTCACAAGAAACCATATAGTGAGGTGTTTTCAAGTTGCTTTCCTTTTGTGGAAGAGTACAGCTGTTATCGGTTTGTAACCTTGGGTGAGACTAAGATGAAAAAAAGTGGAGGACCATGCAGCAAACTGTGTATTTCTGTATGGCTGTCTGACCTTCTTTGCGAcgaataaaatctttaa
>XM_043235606.1
CTTTTGTGTGGATGTTTTCTGAGGTTATAGTTTCTTCAGTGGACCGGGTGGCTGCTTTCAGTTTCGATAGCGCGTTAGAGTGGGACGTACACTTCCTGCTGTTCAAATAATGCGAAAGATACCACAGTCTCCTTCGTGAAATGACGCTTTTAAAACATCCAAGAATCAGACTGACTGAAATGAAGCGATGAAACACAGCAGGATGAAGAAACGAAGCTGTAAGAAGAGAAAGCAGACggggtcttcctcccactctAAACATAAGAAGAGGAAACGAGTCGAGAGACAAAACTGCCCTAaaACACTGCCAGCACAAAACAACACTCTGAACAAAAACCAGCTTCCCGTTACGTGTGGCTATAAAGAAGGTGTCCTGTATTTGAAGAAGTTTTATAATAAGCAGAAGTGCATCTTCAGTGAGGAACAGTGGTTCAAGCCCACTGAGTTTGAGAGGTTTGGTATGAAGGAGAAGAACAAAAAGTGGAGGACCAGCATCCTTTGCAGTGGGATTCCACTCCAGAGACTCATAGAGGATGGATTTCTTTCAGctacaacctttaaaaaaagcagagtTCAGGATGCAAAGaaaaATAGAAGTCAAGTGGGTTTGAAAAAACAGGAATCACATGAAAGGATTGAAAACAATCAAGACGACGATgacaataatgatgatgatgatgatgatgatgatgatgatgatgatgaagctACTGACATGGGCGTCTTTGAAGGTCCAGTCCTACCTGTTACCTGTGGTTCTGATTCTGGCATTCTACACAAGTATCGATTTTCCACAGGGCGCTGTGGGAGATGCATAAGAACAGAGAACTTCTGGCTGACGCCTGAGGATTTCATCAAATTGGGCAAACCAGAGGGAACATGGAAGAAAGACATCGTGTCCCACGGAGTGCCTCTTGGGAAGCTTATAacgAAGAGAGCTTTGGAGCCACATGCAGTTAACTGTGATTGTGAGATCTGCCAAGAACCGGATCAGAACCTACTGAATGATGACGTGTGTTTCGAGTGTAATTCTGAGGGAGATCTTGTGTGTTGTGACGAGTGTCCGCGAGCTTTTCATTCGCTCTGTCACATACCGGCTGTACATGGAGACTCATccggAAGCCAATGGAGCTGCACATTTTGCGTGATGAAGACTGCGAAAAGATCTGCTCAGAGGACCCAACAGGATGTTTTGAGCAGTCCAGTCTCTCAGTACACACTGCACTGCCAGTATCTGCTGCTACACCTGCTACGTGAGTGCATGACTGACCCCTGCGCCAATGGTCCGGGAGACAGTGAGAACATCTGTGGTCCCATGATGCTGGGCAGAGTGAAGCTGAACCTGGAGAACAACGACTATCAAACAGTGCAAGAGTTTATCAAAGCTATTGAATACGTGTTCCACCACTGCACCGCCAACAGGGATAATGACTTCAGTAGGATGACATCTAGGCTTAAGGAACTGTTTGAAAGCGTCTTTGAGCCCTTGTGATATCACGCTCTAAAAAGCAGTCCTTTGTATAAATACAGTACGACAAATATTTATAGAGCATCACAAAGGCTTTCAGTTGTAAACAATTACTTGCAGTGCATTCAACTCACcgccttttgaaaaaaaaagtttaattccAAGTATATGATGTACATGATGGGTCCAAAACCGATATGTTTTTCgttgttgctgctgttgtttgTGTCTTGCATTGAATGTGGTGAGGTGGGGaatatttattagtattctTCTCATTAAggtaaataaaacagcaatggTTATctcataaaacagaaaaagagaatgtctgttagtgtgtgtgtgtgtttcggcTTTTTAAATATGCCAAAAGTAttacttatgtttttataatcGCCTCTCATTTGATGCTGTCAAAAAATATGGCACTTCCCTGACTAGGTTTTTCTGTGTCAGAAGTGTGTAGGACGGAGATACCAACCAGTAGATACCATTTCTATTCAAGTAATACAgacgtttcttttaaaaatttgttttgcaatttatttctaaTGCCAGTGGCAGGAAATGCGCGCCTTAATgactgtgtcatttttttttctgtgaaacaaagGTTAAATATGTCCGGAATACCtataatgaagaaaaattaatttctgttcCTCTGTAAGGTAGTGATTTTCTATTAGTTTGCCTAGCGGTCAAAATGAGATATCACCAGGGGTCCTGGAAGAAAAAGTCATATGTACCTTAAATATACAGGATGGGGATTCACAAGAAACCATATAGTGAGGTGTTTTCAAGTTGCTTTCCTTTTGTGGAAGAGTACAGCTGTTATCGGTTTGTAACCTTGGGTGAGACTAAGATGAAAAAAAGTGGAGGACCATGCAGCAAACTGTGTATTTCTGTATGGCTGTCTGACCTTCTTTGCGAcgaataaaatctttaa

Function

NR:

description
PREDICTED: nuclear body protein SP140-like protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235605.1 True 2452 mRNA 0.42 13 23415427 23420974
XM_043235606.1 False 2420 mRNA 0.42 13 23415444 23420974

Neighbor

gene id symbol gene type direction distance location
si:dkey-68o6.8 NA coding upstream 2621 23410619 ~ 23412806 (+)
LOC122341912 LOC107695123 coding upstream 14505 23397759 ~ 23400922 (+)
LOC122341358 LOC107585025,LOC107716530,LOC107662363 coding upstream 23240 23372660 ~ 23392187 (+)
LOC122341901 LOC107740603,LOC107662366,LOC107690737,LOC107602322,LOC107585068 coding upstream 78942 23326597 ~ 23336485 (+)
LOC122341903 LOC107740604,LOC107662367,LOC107585029,LOC107710048,LOC107602318,LOC107690738 coding upstream 95595 23310836 ~ 23319832 (+)
slc25a17 slc25a17,LOC107748783,LOC107672147,LOC107709637,LOC107695117,LOC107602302 coding downstream 17424 23438398 ~ 23444074 (+)
mrtfaa LOC107695127,LOC107723606,LOC107602328 coding downstream 24012 23444986 ~ 23480291 (+)
cbx7a LOC107695130,LOC107748788,LOC107583303,LOC107602332,LOC107672137,LOC107723608 coding downstream 161457 23582431 ~ 23587628 (+)
st13 st13,LOC107695132,LOC107672142,LOC107602335,LOC107583261 coding downstream 215387 23636361 ~ 23644540 (+)
napsa zgc:63831,LOC107695135,LOC107748792,LOC107583260,LOC107672139,LOC107723590 coding downstream 234537 23655511 ~ 23661345 (+)
LOC122341920 LOC107672134,LOC107602299 non-coding upstream 518 23412813 ~ 23414909 (+)
LOC122341922 LOC107695122,LOC107583308 non-coding upstream 14505 23396501 ~ 23400922 (+)
G22582 LOC107687786,LOC107710056,LOC107662412,LOC107740652,LOC107585075,LOC107582935,LOC105912825,LOC103364773 non-coding upstream 266809 23100944 ~ 23148618 (+)
G22584 NA non-coding upstream 298587 23114278 ~ 23116840 (+)
G22581 LOC107740652,LOC107662412,LOC107582935,LOC107687786,LOC107710056,LOC107578312,LOC107577241 non-coding upstream 320005 23089473 ~ 23095422 (+)
G22754 NA non-coding downstream 142066 23563040 ~ 23563246 (+)
G22757 NA non-coding downstream 153924 23574898 ~ 23578241 (+)
G22758 NA non-coding downstream 157502 23578476 ~ 23646166 (+)
G22800 NA non-coding downstream 246931 23667905 ~ 23672990 (+)
G22795 ddx5,LOC107695114,LOC108432077,LOC107583258,LOC107723600,LOC107602339,LOC103024726,LOC103143670,LOC106937022 non-coding downstream 250420 23671394 ~ 23749009 (+)
LOC122341907 NA other upstream 6613 23403441 ~ 23408814 (+)
LOC122341898 LOC107662363 other upstream 53485 23343964 ~ 23361942 (+)
dnal4a dnal4a,dnal4,LOC107662365,LOC107585028,LOC107690743,LOC107740666,LOC107710037 other upstream 71787 23338379 ~ 23343640 (+)
prr15la prr15la,LOC107710040,LOC107585086,LOC107662431,LOC107582938,LOC108412372 other upstream 251711 23158219 ~ 23163716 (+)
LOC122341356 il2rb,LOC107695139,LOC107583317 other upstream 507292 22899333 ~ 22908135 (+)
zmp:0000000912 LOC107748810,LOC107695116,LOC107583322,LOC107695109,LOC107583307,LOC107709636,LOC107672113,LOC107602301 other downstream 3647 23424621 ~ 23431766 (+)
c1qtnf6a c1qtnf6,c1qtnf6a,mgat3a,LOC107695119,LOC107723613,LOC107672153,LOC107583300,LOC107748818,LOC107580620,LOC107695120 other downstream 288529 23709503 ~ 23721719 (+)
LOC122342055 pik3r6,LOC107719336,LOC107703883,LOC107563351,LOC107728708,LOC107583295 other downstream 618928 24039902 ~ 24051913 (+)
G22958 NA other downstream 674050 24095024 ~ 24097159 (+)
G22996 LOC107703883,LOC107563351,LOC107719336,LOC107583295 other downstream 1013081 24434055 ~ 24439463 (+)

Expression


Co-expression Network