c1qtnf6a (c1qtnf6,c1qtnf6a,mgat3a,LOC107695119,LOC107723613,LOC107672153,LOC107583300,LOC107748818,LOC107580620,LOC107695120)


Basic Information

Item Value
gene id c1qtnf6a
gene name c1qtnf6,c1qtnf6a,mgat3a,LOC107695119,LOC107723613,LOC107672153,LOC107583300,LOC107748818,LOC107580620,LOC107695120
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 23709503 ~ 23721719 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU33845
ACGCCATCTACAGCGACGACGTGGACATCTACATCACCTTTAACGGATACCTCATCAGACCGGAAACCGAGTGAGACCAGAAACGGGGGACGGGGGAGGAAGGCGAGGGTTTGAAAATGTGCCGAAGTGTTTGATCAGTGGAGCAGCTTTAACGAAACTGAAAAGCATCCAAACCGTTCATATTCGATTTCTGCAGTCCAAACTGAATCCCCTAATGCAGAGGAATCTGCTTTTTCTACTTCAGTGTGGGGTCTTGTGTGAAGAGAAGAGGGAAGGTTTCGGTCGGATTAGCAAAATGCTATTATATCACATTAGgacataaaactttaaaagctaGTATAGTATAAAACATCCTCAGCAGGCGTCGGCGGTAAACAAGATCCGAGCCTATCGTGCTTGGGCCGCTGTGGTTTGTTTTAAGCTTTAGCACTGTGTCATGTTGAGCAGTAGATCATTTCATTGGCTAGTTGGGTAGACATAGTTGTGAATTAATGAGGATTAGCTGACATGTAGTAACAAAGtgacttatagttagtagaatgtctaaagtggactatgaACATGAAGTGTAACATTTCGATAAATACGTAacaattcaaatgcattttagtgcaattttcatACATTACTGAAAATGTTTGGAGATCCTTTCATAGAAACACTGAGGAAAAACCACGTACCAGATGGCATGTAAGGAGAGAAATgtcattaaatcataaaaacattttatagccACAAAGCGGctaaagcattgtttttcagacaCCAAAGCAACAAAACTAGTTAAATAGTAAAACACAGTTGGCATTTTGTTATGGTCTGTCTGTGATCTGTtggaaattcataaaaaatgtgGAACTTGAAAACTGAATAACAAGCAGTTAAAGGTTTTGAAACTCTTTACCATCAGTTTCATTTCTTGCTTAAAAGCTACTTAGCTGCCCATTTGAAACGGACCTGCTTCTATTAATGTTCTTCTTTTGCATATGGGTTCTCCAGCAAGTAGCTATACTTCTCATAGTTGTCCAGCAGGTATTTTGGAGCATACATATGCTCTTTGGGGTGTGAGGGTGGGTAGTCTGGAGCAGACCCATCAAACCAACCCCCTGTCCGTATTAACTCTTTAATGTAACTTATCTTCCGCTTCTCGCCGTAATCGCCCCAACGTGGGAAGTCTCCATTTTGGGCCGATAAAAGTTTGTAGTAAATTCCTTCCGGTTTAAAACACCAAGAACAGTGCCATCCAGCGTAGTGAACTGGACTTCCGATGGCCCACGGCACCAGAATGCGCTCCCGTGGAGTTCTCATACTCCCGGAATCCCGACATGGAATAATACGACCGGCGCCGGAGATAGATCCCATCGCCCTTGTAAACCTTAAAGAGCATAGCGGTGGTGCAGGCGGACAAAATGTTCAGCGTTCCGAACTGCCTCCAGTAGAATCCGTAAAGAGATTTGCGCATGTGGATCCCGACCGGTTCTGCCCAGCCCTCGTAGAGCTTGAGGAAAAGAAT
>XM_043230466.1
CCCAACTGCAGCTGCAAACGCAACAAGCACTATCACACAATGTTTGGGTCCCTCCTGCTCGCCTGTTTGTTTCTACATCCGGTAGTCTCCATACCTCAACCGGCCTGCCGTCGATGCTGTGACCACCTCCTACCACTTGATGACGCTGCCACGCTCAGAGAAAGCGTGCCTGCAATGCCCGAGGTCCGCACCTACATCAACATGACCATTCTCAAAGGTGACAAAGGTGATCGCGGAGAAAGGGGAACTCCTGGGAAGCCTGGGACTGAGGGTTCAGTGGGACCGCAAGGCACTGCAGGACTCAAAGGAGATAAAGGACAAGCCGGAGCTCCAGGAGATGCCTGCAAATCGCAGCATTCTGCTTTCTCAGTGGGCAGACGGAAGTCCCTTCACAGCATTGACAACTACCAGGCCCTGGTCTTCGACACCATCTTCGTGAACTCCCCCGAACACTTCGACATGTTTGCCGGGAAGTACCGCTGCCAAATCCCAGGAATCTACTTCTTCAACGTGAACATCCACACGTGGAACTTCAAGGAGACCTACCTGCACATCATGCAGAACAACAGCGAGAAGGCCATCGTCTACGCCCAGCCCAGCGACCGCTCCATCATGCAGAGCCAGAGCCTCATGCTGCCCCCTGCGGAGGGAGACGAGGTCTGGGTCCGCCTCCAAGGAGAGCGGGAGAACGCCATCTACAGCGACGACGTGGACATCTACATCACCTTTAACGGATACCTCATCAGACCGGAAACCGAGTGAGACCAGAAACGGGGGACGGGGGAGGAAGGCGAGGGTTTGAAAATGTGCCGAAGTGTTTGATCAGTGGAGCAGCTTTAACGAAACTGAAAAGCATCCAAACCGTTCATATTCGATTTCTGCAGTCCAAACTGAATCCCCTAATGCAGAGGAATCTGCTTTTTCTACTTCAGTGTGGGGTCTTGTGTGAAGAGAAGAGGGAAGGTTTCGGTCGGATTAGCAAAATGCTATTATATCACATTAGgacataaaactttaaaagctaGTATAGTATAAAACATCCTCAGCAGGCGTCGGCGGTAAACAAGATCCGAGCCTATCGTGCTTGGGCCGCTGTGGTTTGTTTTAAGCTTTAGCACTGTGTCATGTTGAGCAGTAGATCATTTCATTGGCTAGTTGGGTAGACATAGGTCACAGCAGCAAACACTGTGAGATTATCtaacactctcagaaaaatTTGGCGGTCTATTTCTGATCACAAGAAGGTGACTACATCCATCTTCCCTTCCCAGCACATGTTTGAGATGGTTTAAGCTTGTTTAGGACCAGCACTGAGGACCTGCTTCACTAtccatgcttcaaaacctacctaagcagcatatgctgtttttttccccacagggTTTGATTTTTGTTGGGACAACCTAAAATTGTATATAGCCTATCGGGTATTAAAACGGTCAGCGAGAGTGACCAAAGTTTGTCcaaaattgattgattggtttgacatttttaaaacgttatttacattttttcctcaaatgttttagttgttttagtcTGAAAGTTTGCAAAATGATCAAATCGAACGTTCCCTCACCGTTCACATAACCGTGTGACCGCATAAGTAGTTTTAGTTGTTAGCTGGGTCCATGCGCAGATTATGAAGCTCAGCTCGTATAGAAGTCACTTTCAGGCCGATGTGATTTGGGATAATTTGCAAAACCAAGAGCTAAATCTGCATGGGGAAGGTTTGGTGAGCGTGATTTCACAGTACAAGGCATTTGTGGATCAACATCCttgttaaccctggaacaacatcccagtcaaccaatcagatttagGAGATTACTTTTAAGGAAAAGATCTGTTTTAGGCTTAGATCAaggttaggtgcttctacaccATTGTTAATCATTGTATCATATCCCACTGgttttaggaatacattttgggtagggttagTTTTAATGGTAAGGATTGGgataagtttatatttttggacagtaatgttgatccaggatcatgacCACTTGTGTTCAGTGTTGGATGAACCAGGT

Function

symbol description
c1qtnf6a Predicted to be located in extracellular region. Orthologous to human C1QTNF6 (C1q and TNF related 6).
mgat3a Predicted to enable glycosyltransferase activity. Predicted to be involved in N-acetylglucosamine metabolic process. Predicted to act upstream of or within protein N-linked glycosylation. Predicted to be located in membrane. Is expressed in intestinal bulb and pharynx. Orthologous to human MGAT3 (beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase).
c1qtnf6 Predicted to enable identical protein binding activity. Predicted to be located in extracellular space. Predicted to be integral component of membrane. Predicted to be part of protein-containing complex.

NR:

description
complement C1q tumor necrosis factor-related protein 1-like

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU33845 False 1513 lncRNA 0.43 2 23715226 23721719
XM_043230466.1 True 2039 mRNA 0.47 4 23709503 23716576

Neighbor

gene id symbol gene type direction distance location
il2rb il2rb,LOC107583317,LOC107695139 coding upstream 4065 23696193 ~ 23705438 (+)
LOC122341829 LOC107672151,LOC107583318,LOC105890774,LOC103393291,LOC107695138,LOC103147375,LOC105029658,LOC107748796,LOC102224681 coding upstream 22214 23684853 ~ 23687289 (+)
mpst mpst,zgc:162544 coding upstream 24792 23682485 ~ 23684711 (+)
si:ch211-256m1.8 si:ch211-256m1.8,LOC107748794,LOC107695133,LOC107583259,LOC107723616,LOC107672154,LOC107602338 coding upstream 28491 23674032 ~ 23681012 (+)
napsa zgc:63831,LOC107695135,LOC107748792,LOC107583260,LOC107672139,LOC107723590 coding upstream 48158 23655511 ~ 23661345 (+)
trnas-aga_1 NA coding downstream 114380 23836099 ~ 23836180 (+)
mchr1b mchr1b,LOC107719342,LOC107672125,LOC107672690,LOC107602308 coding downstream 151412 23873131 ~ 23877674 (+)
LOC122342045 mfsd6l,LOC107719337,LOC107583315,LOC107728393,LOC107563357,LOC107703882 coding downstream 330203 24051922 ~ 24056391 (+)
zgc:171844 zgc:171844,LOC107672688,LOC107719339,LOC107583313,LOC107703875 coding downstream 336974 24058693 ~ 24071844 (+)
tom1 LOC107672685,LOC107583252,LOC107719328,LOC107563358,LOC107703898 coding downstream 362267 24083986 ~ 24094610 (+)
G22800 NA non-coding upstream 36513 23667905 ~ 23672990 (+)
G22758 NA non-coding upstream 63337 23578476 ~ 23646166 (+)
G22757 NA non-coding upstream 131262 23574898 ~ 23578241 (+)
G22754 NA non-coding upstream 146257 23563040 ~ 23563246 (+)
LOC122341920 LOC107672134,LOC107602299 non-coding upstream 294594 23412813 ~ 23414909 (+)
G22802 NA non-coding downstream 32803 23754522 ~ 23755997 (+)
G22816 smurf2,LOC106937021,LOC107104615,LOC106934056 non-coding downstream 37024 23758743 ~ 23759342 (+)
G22833 NA non-coding downstream 80457 23802176 ~ 23805489 (+)
G22857 NA non-coding downstream 149076 23870795 ~ 23871177 (+)
G22863 NA non-coding downstream 164523 23886242 ~ 23886606 (+)
zmp:0000000912 LOC107748810,LOC107695116,LOC107583322,LOC107695109,LOC107583307,LOC107709636,LOC107672113,LOC107602301 other upstream 277737 23424621 ~ 23431766 (+)
LOC122341907 NA other upstream 300689 23403441 ~ 23408814 (+)
LOC122341898 LOC107662363 other upstream 347561 23343964 ~ 23361942 (+)
dnal4a dnal4a,dnal4,LOC107662365,LOC107585028,LOC107690743,LOC107740666,LOC107710037 other upstream 365863 23338379 ~ 23343640 (+)
prr15la prr15la,LOC107710040,LOC107585086,LOC107662431,LOC107582938,LOC108412372 other upstream 545787 23158219 ~ 23163716 (+)
LOC122342055 pik3r6,LOC107719336,LOC107703883,LOC107563351,LOC107728708,LOC107583295 other downstream 318183 24039902 ~ 24051913 (+)
G22958 NA other downstream 373305 24095024 ~ 24097159 (+)
G22996 LOC107703883,LOC107563351,LOC107719336,LOC107583295 other downstream 712336 24434055 ~ 24439463 (+)
G22953 mfsd6l,LOC107719337,LOC107583315,LOC107563357,LOC107728393,LOC107703882 other downstream 725159 24446878 ~ 24449289 (+)
mcm5 mcm5,LOC107703892,LOC107670920,LOC107719335 other downstream 803561 24525280 ~ 24530769 (+)

Expression


Co-expression Network