mcm5 (mcm5,LOC107703892,LOC107670920,LOC107719335)


Basic Information

Item Value
gene id mcm5
gene name mcm5,LOC107703892,LOC107670920,LOC107719335
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24525280 ~ 24530769 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU34113
TGCTGATGAGGAGTGGAGCGAAGGAACACGAGAGAGAGACCGACAGACGCGTGTCCATCCCCATCACTGTCAGGCAGCTCGAGGCCGTGGTGCGTATTGCAGAGTCTCTCGCTAAGATGAAGCTGCAGCCCATCGCTGGAGAGGAGGAGGTGGATGAGGCTCTCAGACTCTTCCAGGTGTCCACGCTGGACGCGGCTCTGTCCGGGAGCCTTTCCGGTGTTGAAGGATTTACTTCTCAGGCGGATCAGGAAATGATCTCTCGCATAGAAAAGCAGCTGAAGAGACGCTTCGCCATCGGCTCCCAGGTGTCTGAACACAGCATCATACAGGACTTCACCAAACAGAAATATCCAGAACACGCCATTCACAAAGTCCTTCAtttgatgatgaggag
>XM_043234711.1
GACCAGAGGTTTTGCCGCGAAATCAAGCGCGCGCGTAGCACGGGGGCGCACGGTTCTTTCTCGTCTGCAACGTTATAGCGGTAGTTAAGCTCAGCGAAGACAGCACTTGTTTAAGTAACACCGTATTGATCGTTTATTACAAGGAATATTAGCAGAATGTCGGGGTTTGACGATCCAGGAGTTTATTACAGTGACAGTTTTGGAGGAGGCGAAGGCTTCGGCGATGAAGGGGTCGTGAAACGCAGTCAGATCAAAAAGAAGTTCCGTGAGTTGAGGCAGTTCAGAGTGGGCACCGATCGCACCGGATTCACCTACAAATACAGAGATGAACTCAAGAGGCACTATACTTTGGGAGAGTACTGGATTGAGGTGGAAATGGAGGATTTGGCCAGTTTTGATGAAGACCTGTCAGACTGTCTGTATAAATTGCCTACTGAGAACCTGCCTTTGCTGGAGGAGGCGGCGCAGGAAGTGGCCGATGAGGTCACACGTCGGCCCGTAGGAGAAGAGTCTGTGCAGGACATACAGGTCATGCTGAAGAGCGACGCTCACCCGGCCTCCATCCGCAGCCTGAAATCGGAGCAGGTGTCGCGTCTCGTGAAGATTCCCGGTATTATCATATCCTCGACGGCTGTGAGGGCCAAAGCCACCAAAGTGTGCCTCCAGTGCCGCGGATGCAAAGCAGTCATCAGCAACATTCCTCTGCCGGGACTGCAGGGATACGCTCTGCCCCGCAAGTGCAACACGGAGCAGGCGGGCCGTGTCAAGTGCCCCGTGGATCCGTACTTCATTATTCCGGACAGATGCGTGTGTGTGGATTTCCAAGCGCTGCGCCTGCAGGAAGCTCCTGATGCCGTTCCACACGGAGAGATGCGACACATGCAGCTCTACTGCGACAGGTACTTGTGTGACCGTGTAGTACCAGGAAACAGAGTAACAGTCATGGGCATCTACTCCATCAAGAAAGTGGCGCAGACCAAGGCCAAAGGTCGTGATAAGGGAGCAGGTGTGGGCATCCGGTCAGCGTGCCTCCGCGTGGTCGGCATTGAAGTGGACACCGAAGGAGCAGGACGTGGAGCCACTGGTTCAGTTTCTCctcaggaggaggaggagttaAGGGCTCTGGCTTCGTCTCCGTCCATCTACGACTCCCTCGCTCGCTCTCTGGCCCCGTCCATCTATGGCAGCGATGACCTGAAGAAAGCCATAGCCTGTCTCCTGTTTGGGGGCTCCAGGAAGAGGTTGCCTGATGGTTTGACACGCAGAGGTGATATAAACCTGTTGATGTGGGGGAGATCTCGCACGGCCAAGTCACAGTTGCTGAAGTTTGTGGAGAGATGTTCTCCGATTGGGGTCTACACGTCTGGTAAAGGCAGCAGTGCAGCTGGTTTGACCGCCTCCGTGCTGCGAGACCCCAGCACCCGAGGTTTCGTCATGGAGGGTGGTGCCATGGTGCTGGCTGATGGAGGAGTGGTCTGCATTGACGAGTTCGACAAGatGAGAGAGGATGACCGGGTCGCCATCCACGAGGCCATGGAGCAGCAGACCATTTCTATTGCAAAGGCTGGCATCACCACCACTCTGAACTCCCGCTGCTCCGTACTGGCCGCCGCCAACTCCGTGTTCGGCCGCTGGGATGATACAAAAGGAGAGGACAACATAGACTTCATGCCCACCATTCTGTCTCGATTCGACATGATCTTCATCATCAAAGACCAGCACGACCAGCAGCGAGACATGACCTTGGCCCGGCACGTGATGAACGTTCACCTGAGCGCTCAGATGCAGACGGAGGGAGTCGAGGGAGAGATTCCTCTGGCCACGCTGAAGAAATACATCGCCTACAGCAGAACGAAATGTGGACCGTCTGTCGCGGCCGCCCGCGAGAAACTGAAGAACAGGTGCGTGCTGATGAGGAGTGGAGCGAAGGAACACGAGAGAGAGACCGACAGACGCGTGTCCATCCCCATCACTGTCAGGCAGCTCGAGGCCGTGGTGCGTATTGCAGAGTCTCTCGCTAAGATGAAGCTGCAGCCCATCGCTGGAGAGGAGGAGGTGGATGAGGCTCTCAGACTCTTCCAGGTGTCCACGCTGGACGCGGCTCTGTCCGGGAGCCTTTCCGGTGTTGAAGGATTTACTTCTCAGGCGGATCAGGAAATGATCTCTCGCATAGAAAAGCAGCTGAAGAGACGCTTCGCCATCGGCTCCCAGGTGTCTGAACACAGCATCATACAGGACTTCACCAAACAGAAATATCCAGAACACGCCATTCACAAAGTCCTTCAtttgatgatgaggaggggcgAGCTGCAGCACCGCATGCAGAGGAAGGTTTTGTACAGGGGTCAATGGAAGTAA

Function

symbol description
mcm5 Predicted to enable single-stranded DNA binding activity. Predicted to contribute to 3'-5' DNA helicase activity and single-stranded DNA helicase activity. Acts upstream of or within chordate embryonic development; mitotic cell cycle; and negative regulation of apoptotic process. Predicted to be part of MCM complex. Predicted to be active in nucleus. Is expressed in several structures, including endoderm; head; nervous system; pronephric duct; and tail bud. Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 8. Orthologous to human MCM5 (minichromosome maintenance complex component 5).

NR:

description
DNA replication licensing factor mcm5-like

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006270 DNA replication initiation biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0009790 embryo development biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function

KEGG:

id description
K02209 MCM5, CDC46; DNA replication licensing factor MCM5

RNA

RNA id representative length rna type GC content exon number start site end site
TU34113 False 394 TUCP 0.54 4 24529541 24530563
XM_043234711.1 True 2358 mRNA 0.55 23 24525280 24530769

Neighbor

gene id symbol gene type direction distance location
gcat gcat,LOC107703894,LOC107670921 coding upstream 680 24521028 ~ 24524600 (+)
LOC122341365 NA coding upstream 150716 24369213 ~ 24374564 (+)
LOC122342039 foxred2,LOC107719334,LOC107559237,LOC107670923,LOC107703880 coding upstream 363038 24156356 ~ 24162242 (+)
LOC122342038 mcm5,LOC107703892,LOC107670920 coding upstream 376921 24142816 ~ 24148359 (+)
LOC122342047 gcat,LOC107703894,LOC107670921 coding upstream 383159 24138543 ~ 24142121 (+)
foxred2 foxred2,LOC107719334,LOC107559237,LOC107670923,LOC107703880 coding downstream 8554 24539323 ~ 24545214 (+)
ankrd54 ankrd54,LOC107670919,LOC107559232,LOC107563363,LOC107719341,LOC107728844,LOC107703879 coding downstream 14642 24545411 ~ 24549093 (+)
hmgxb4a LOC107658693,LOC107758107,LOC107728447,LOC107703878,LOC107563362 coding downstream 18458 24549227 ~ 24557112 (+)
si:dkeyp-69e1.8 LOC107758106,LOC107658694,LOC107703890,LOC107728849,LOC107563364,LOC107559220 coding downstream 27977 24558746 ~ 24562589 (+)
s1pr5a s1pr5a,LOC107758128,LOC107577264,LOC107658699,LOC107728470 coding downstream 83830 24614599 ~ 24618241 (+)
G22968 NA non-coding upstream 8282 24133726 ~ 24516998 (+)
G22988 mfsd6l,LOC107719337,LOC107728393,LOC107583315,LOC107703882 non-coding upstream 75410 24268426 ~ 24449870 (+)
G22990 NA non-coding upstream 185626 24338871 ~ 24339654 (+)
G22982 NA non-coding upstream 289205 24233766 ~ 24236075 (+)
LOC122342065 NA non-coding upstream 310306 24212347 ~ 24214974 (+)
G23002 NA non-coding downstream 26942 24557711 ~ 24558261 (+)
G23005 NA non-coding downstream 32043 24562812 ~ 24563127 (+)
G23004 NA non-coding downstream 32477 24563246 ~ 24563895 (+)
G23011 NA non-coding downstream 81757 24612526 ~ 24612751 (+)
G23014 ldlra,ldlr,LOC107758126,LOC107658701 non-coding downstream 84398 24615167 ~ 24673712 (+)
G22953 mfsd6l,LOC107719337,LOC107583315,LOC107563357,LOC107728393,LOC107703882 other upstream 75991 24446878 ~ 24449289 (+)
G22996 LOC107703883,LOC107563351,LOC107719336,LOC107583295 other upstream 85817 24434055 ~ 24439463 (+)
G22958 NA other upstream 428121 24095024 ~ 24097159 (+)
LOC122342055 pik3r6,LOC107719336,LOC107703883,LOC107563351,LOC107728708,LOC107583295 other upstream 473367 24039902 ~ 24051913 (+)
c1qtnf6a c1qtnf6,c1qtnf6a,mgat3a,LOC107695119,LOC107723613,LOC107672153,LOC107583300,LOC107748818,LOC107580620,LOC107695120 other upstream 803561 23709503 ~ 23721719 (+)
G23026 LOC107559242,LOC107758098,LOC107658707,LOC107728516,LOC107695967,LOC107568243 other downstream 190757 24721526 ~ 24811577 (+)
LOC122342019 LOC107758123 other downstream 452512 24983281 ~ 24993218 (+)
arhgap17b arhgap17b,LOC107559249,LOC107758115,LOC107670674,LOC107689995,LOC107728593 other downstream 816015 25346784 ~ 25374498 (+)
G23061 rps2,LOC107758112,LOC107690003,LOC107555664 other downstream 881149 25411918 ~ 25447270 (+)
tob1a tob1a,LOC107690006,LOC107758110,LOC107555665,LOC107583660,LOC107728672,LOC107670673 other downstream 993540 25524309 ~ 25569403 (+)

Expression


Co-expression Network