CI01000003_00266342_00275005


Basic Information

Item Value
gene id CI01000003_00266342_00275005
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 266342 ~ 275312 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000003_00266342_00275005.mRNA
ATGTCGTCCAGCCGGCATTTCAACGTTGATTCACCGGTGAATCAACGTCGGGAACATGGCATGGAGGGGTTGCTTTATGAAATGTGCCAAAATAAACAATATACCTGCACAATTCTTGTGTCCAAAAAGCTCAAGCAAAGATGTGGCTTCAGGAAAGCTCAGAGACAATCAGAGAAAAAAAGAGGTCTGCGAGAGGAGACTGATGCAGGTGAAGCAGAAGGACAAAAGCATGCTGTGCCAGGGAAACCACCCAGAAAACCAGATAGACTCTTCAGACCACTGGTGTTCACAGTGGGGGCTGTTCCAACACCATTTCAGTTTACAGGCTGCTCCTTTGGCACGGCTGCCATCTTGCAGTATGAATCAGTAAAGTCACGAGTGCAAATGGCCATGGAGGAGGCCAAAGAGAAGCGGGATAAACTCAGAGAGGGTCATAATACAACATACTGGCATAACTGGTGGAATCAGCTGTCACACTTCCAGAAGCAGGTGATTCCGGTCATGTCTGTGGTCGATGATTGGTGGAGTGGGCTCAGTGAAGGACAGAAGACGGTCACAGGTATCGTAGCTCTAAACACTCTGATTCTGTGTTGTTGGAGAATTCCTTCAATGCAACGCTCTTTGGTCAAGTACTTCACATCTAACCCTGCCTCCAAGACACGTTGCCTTCCCATGGTTCTCTCTTCTTTCAGCCATTACTCCATCATTCACATGTTGACCAACATGTATGTGCTATGGACCTTCTCTACTAGCATTGTCTCTCTGCTTGGGAGAGAGCAGTTTTTGGCCCTTTATCTGTCTGGAGGTGTTATCTCGACATTTATCAGTTACGTGTTTAAGACAGATACTGGTCTACTGGGCCCTTCGCTTGGAGCGTCGGGGGCCATCATGACGGTACTGGCAGCAGTCTGCACCAAGATACCTGAAGCTAAGCTGGGCATCGTCTTGCTTCCTATGATCAACTTCACTGCAGGAAATGCTTTGAAAGCGCTTCTTGCTTTGGATACAGCTGGTCTTCTTTTGGGCTGGAGGTTTTTTGATCATGCGGCCCATCTTGGTGGGGCTCTGTTTGGAGTGTGAGTGTTTCATTGTGCTACACACCACTGATCTGAACTAGGGGTGGGCGCTATACCTGTATGAAAGTGACTACCGGTATAATGTTGTGCCATGATATAGATTTTGTTATACCGTGGATAACGTTAAATATTCATGAATTCTAATTTTGCATTTATATTGTTTTGTTTAATTTTGTACTCTTTACAACTTTTAAAACTACTAATGTCGATATGATTCAACGCTGAATGTTTAACTTTTGTCCGCTACCGTGTCCAGCGCCTTACTACACAGGCATTAGTAATCAAACACAGAGAGCATTGTAACAGTCCAA
>TU25338
CCAGCCGGCATTTCAACGTTGATTCACCGGTGAATCAACGTCGGGTACCATGGTTGAATCAACGTTGGATTACCTTTCGGTTTTGCAAATTGGATCAACGTTAATATTGTGACGTTGTTTCATCGTTGAAATTACGACGTTGTTTCACCGTTGATATCGCGTCGTGCTTTCACCGTCTTATGGTTGAATTAATGTTGGATTACCTTTCGATTTTGCAAATTGGATCAACGTTGAAAATGCGACGTTGTTTCACCCTCTTACCTTCAACATGGATGAATACACTATTTTACATGAAATTACAATCTAGTTTGCGTTTGTACTAACATGACAATACTAAATAATTACTGTACATGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000003_00266342_00275005.mRNA False 1387 mRNA 0.45 10 266342 275312
TU25338 True 355 lncRNA 0.34 1 266349 266703

Neighbor

gene id symbol gene type direction distance location
CI01000003_00157111_00159800 NA coding upstream 106098 156863 ~ 160244 (+)
CI01000003_00011191_00013812 NA coding upstream 252444 11191 ~ 13898 (+)
CI01000003_00007611_00010967 NA coding upstream 255375 7611 ~ 10967 (+)
CI01000003_00323130_00336023 CLDN15LA coding downstream 47555 322867 ~ 336168 (+)
CI01000003_00355244_00360638 SAGA coding downstream 79932 355244 ~ 360793 (+)
CI01000003_00380494_00385991 PROC, PROCA coding downstream 105182 380494 ~ 386091 (+)
CI01000003_00390997_00406970 WDR33 coding downstream 115585 390622 ~ 408312 (+)
CI01000003_00413809_00414819 NA coding downstream 137278 412590 ~ 415156 (+)
G22439 NA non-coding upstream 22699 241789 ~ 243643 (+)
G22447 NA non-coding upstream 36345 227130 ~ 229997 (+)
G22441 NA non-coding upstream 43559 222013 ~ 222783 (+)
G22438 NA non-coding upstream 46483 219647 ~ 219859 (+)
G22437 NA non-coding upstream 48002 216612 ~ 218340 (+)
G22425 NA non-coding downstream 745 276057 ~ 276995 (+)
G22421 NA non-coding downstream 15158 290470 ~ 290704 (+)
G22422 NA non-coding downstream 15790 291102 ~ 291765 (+)
G22468 NA non-coding downstream 20743 296055 ~ 296973 (+)
G22472 NA non-coding downstream 29071 304383 ~ 304629 (+)
G22420 NA other upstream 76903 179531 ~ 189439 (+)
G22578 NA other downstream 649491 924803 ~ 925248 (+)
CI01000003_01863421_01867859 NA other downstream 1587956 1862854 ~ 1868137 (+)
G23870 NA other downstream 2005348 2280660 ~ 2285641 (+)

Expression


Co-expression Network