G174228


Basic Information

Item Value
gene id G174228
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047772.1
NCBI id JAEQBD010000117.1
chromosome length 471344
location 348191 ~ 351045 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU258421
ATGCCATCAGTGCTGCCAACCCGAGAGTGATAGATGACGCCCGGCCTCGAAAACTGTCCAACGACCTGAAACGCTCCACGATTATTTAAACCTGCTCCACCTACGGTCTTAACGTCGAGAGAGTCTTTCAAGACGGATGGCCGTGAGACTTTTATCTCCTCATCTGTGCACGAGAGCTGTGTTTTTCCAGCTGGAATATCACTGGCACTCCTGTTCACTGATAGCGCTCTCTTCCGCCCACCGCCGTCATGTGGCATGAATGCACGGCAGAGTAAGCTACCCACACATCTCTTTTGTGTCCCTCTATCCACCTAGAAATGCACATTACATAAGTATTTATCTGCTGTGGCCGCTCTGTATATCCGTGAGAGGCTGGGTCCCCCCGGTTCCAGCAGCTTTATTGCTCCGCGCTCTCCGATATCACAGTTGTCACAATGGATTTCTCTCGGCGTTGACGGTTGCCGTTTGCTCCTGCGTGTAATTGCCTCCTCGGGGCTGcgtttgtaataattaaaagacAGAGGCGCGCTTGTTGTCTCTTTGAAAACGCGGACGGATCCACACCGTCTCCACTTTGCTTTGTTTCGCACGAAATGTAAAAGTGAATAACGTCGAGTCACTTGTTAAACGGCCGCAGGCACGCGCTTCGGTCTCCCGGGTTGCCAGGTCCATGCGGTAAATCCGCACAGAAACACCTCGCAGCCTtatgtgtatctatctatctatttgtgtctatctgtctgtcactctgtctgtatctatttatcatctgtctgtcgttctatcGATCGATCAATCTATTtgtcttatctatctatctatctatctatctatctatctatctatctaccccCATCCCCCCTCTGTTTGTTAATGGAGGAGGTGCGTTCAGCGATTACTCCTCCTCCGTTCCCTCCACCCCCAGCATAAGCCAGAGGGAGATGCGCATCGAGACGGTGGCCGCCTCCAACACTCCCACACCCATCCGCAAGCAGTCCAAACGGCGCTCCAACATCTTCACAGTAAGTATGAGGCAGCTAATGCAGAGCACCACGCACTCCCACTATTGAGAGTGCTGGACTTCCCCTGACTGCAGAtctcccagcagcccctgctgCTTTCAGACGGCCAGTGAGCTAGAGAGAAGCTGTTTCTAGGTCTGCAGTGAGTGGATCTGCCCTTAGGTCTCGTCACCCCCTTCCCCTCAAACCCAGGGCAGTGGAGGGCAAAGCCAGAGAGCGTAATGCCATCTCTGACCACAAGAGGGAGGTACGGAGCTAAGTGTAACCGAATCCCTCCTGCCTCTGCTACCACAGAAGCGCATGACCACATGCTTTTTATAGCTACTTATTTCAGTAAACGCGGGGAGGCAagcattacagtttttctcaattgctttggcacatttttcaaaacattcttaactttctctaaactgttagtgcaaatgtcaaaactgtTTGCTGGAACTTCAGAACTCTATTGTATGTCTGCAAAATGTAGTTAGTCACCCAAAACTTttcattcatgcttcaaaacctagttatcttgtcagtcatttggccaaggccaccaaaatataaagtatttttgtcattgtgtgagccacgctggtcaaaatgtttagctgttttttctCCATGGCACTCAACCATGGAAATTaaggttttagtaaaacaaacaaaaaacaaaacaaaactgatatttgttgAGAACAGTCAAtagtacatagaaaaaaaaaagtatatgaacattcgtatttatacagtacatttatttttgtaatgcactacATGTAATCGGAAATCTTGCTCGtccaattactgtacatttcagatgtcttacgttaccacaaatgcaaaataacacccatgagaagaagaaaaaaaaaataattcttggTGGACATCCTGTCGCTGTTGTTGGTCAGGCCAAAGATTTTCATCAACATCACATCTGATGTTTTCCATTGCAATGCACCGGGGAAAAAATCTCCTTGAATGCCGTACCCATCCCCTGCAATGATCAGCTGTGATGTCCTCACATGCAGCATTCATGGCATTCAACAGAGACATCTGATCTTGTGGTCTGTGATCATATACTTTCCACCTCCATGCTGAAAAAAACTCTTCTATTGGATTTAGGAATGGAGAGTACGGTGGAAGGAACTCCACAGTTATTCTTTCATGTGCAGCAAACCACTCCCTAACAATGTTGGTTCGGTGGAAGCTGACATTATCCCAGACATCAACATAATTAGGCAAATGTGGTCCATCTAAACCTCTTTGTTGTTCTGGAACCAGGTCTCTGTAAAGTGTGTTTAGGAAGGCCAGGAGAAGTTGGGTATTATAGGGCCCAATGTGCTCACACCATTCTCTGTAATGGCAGCACACATTGTAATATTGGCCCCACGCTGGCCTGGTGTGTCAGTTGTGGCTCGGTGTCCAATGAGATTGCGACCACGTCTCCGGCCTTTGGACAGATTGAACCCAGC

Function

GO:

id name namespace
GO:0042219 cellular modified amino acid catabolic process biological_process

KEGG:

id description
ko00600 Sphingolipid metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU258421 True 2494 lncRNA 0.46 2 348191 351045

Neighbor

gene id symbol gene type direction distance location
LOC122332499 NA coding downstream 2990 341245 ~ 345201 (-)
LOC122332501 LOC107563545,LOC107667978,LOC107575457 coding downstream 17870 319282 ~ 330321 (-)
LOC122332495 LOC107685875,LOC107671223,LOC107749047,LOC107728228 coding downstream 45327 281499 ~ 302864 (-)
LOC122332500 NA coding downstream 83540 264156 ~ 264651 (-)
LOC122332489 NA coding downstream 119258 226011 ~ 228933 (-)
LOC122332494 LOC107561645 coding upstream 6628 357673 ~ 430746 (-)
LOC122332498 NA coding upstream 81875 432920 ~ 435426 (-)
LOC122332502 NA non-coding downstream 104709 241687 ~ 243482 (-)
G174200 NA non-coding downstream 130849 216042 ~ 217342 (-)
G174198 rab20,LOC107715918,LOC107688770,LOC107557919,LOC107702796,LOC107721577 non-coding downstream 302285 44918 ~ 45906 (-)
G174230 NA non-coding upstream 14856 365901 ~ 369562 (-)
G174235 NA non-coding upstream 42140 393185 ~ 393407 (-)
G174239 NA non-coding upstream 62414 413459 ~ 413774 (-)
G174261 NA non-coding upstream 96263 447308 ~ 447919 (-)
G174266 NA non-coding upstream 101737 452782 ~ 453021 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G136019 NA non-coding NC_048566.1 CM023220.2 35035019 ~ 35035261 (+)
eurasian perch (Perca fluviatilis) G41958 NA non-coding NC_053115.1 CM020912.1 26946649 ~ 26947139 (-)
striped catfish (Pangasianodon hypophthalmus) G47735 NA non-coding NC_047597.1 CM018543.1 16788519 ~ 16788729 (-)