LOC122332494 (LOC107561645)


Basic Information

Item Value
gene id LOC122332494
gene name LOC107561645
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_025047772.1
NCBI id JAEQBD010000117.1
chromosome length 471344
location 357673 ~ 430746 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043229814.1
atttatctttatttttgtaatagaaATATCAATTTGATAAGCATGTACTTTGCACCAATAGAAAGAGGGAAAATTAGGCTCGTATTTGACCATGAAAAAAacgttaaatatatttttaaatgaacaaagctATAGTGaaatttattattgtgattgcatttatttggaaaattACCAGCTTCTCACCGTAACCTCGGCACTGCCCAAACAGGTTCTACAACCCTGCTGAAGaaatgaaagttaaaaacaGACGTGTGATGTTTACAGTTGATCGTGAGAATTATTTTCtccattttaaaaacctgcTCATCAATCTGTTTTATTTGCTGATGTGAGACAACACATGAACataaagagaaagcaaagacGTTTTGAGAAGTTGTCTAGAACCTGAACGTTTTGATCAAAGCAAGTCTTCagctgtggagcagaaagacacttccttattcatAAGTCAATGACAGAAGATGACGTCGGAGCAGAATCTGGATACAATGGAAGGTGAACATAAATGCTTAGAGGCAAGAGAAAAACAAGATCCAGTCCAGATGAGAAATGCCCCGACTACAGTCAGTGTTGATATAAATTCTGAAACAGGTGCGAGTGTAAATGCTCCTCTATTGACTGCGAACACCTTCACAGGACCAGTAACCATTTATGGCTCAAATGCTGAAGGAAACGATAAACAGGAATCCTCAGAGATGGCAGAggaacacagagaaaaacaagagctgcaaaactttttggaaactcacaaaacaaacatgaaggagaaaacagaatatatttttgaggGCAACAAAGACAAGGAAGCACAACTCAAGGCTGTTTACACAGatctgttcatcacagaggGAGATATGAAAGATGTCAATCACGAACATGAGATTCTGAAGATTGATGATGCTTTCAAGAGCAATAAAACACAGGACAAGCCAATCAAatgcaatgatatatttactgGACTGAgaaaaacagtgagaaaaaaTGTTCTCACTAAGGGCatcgctggcattggaaaaactgtctctgtgcacaagttcatcctggactgggcagaaggaaaagccaatcaagatatacactgtgtgttcctgcttccattcagagagatTAACTTAATGACAAATGAAGATTTCAGTCTCCATGAGCTTCTGCTGGAATTTTATCCTGAACTGAAGGACCTGGAGAAATCAAAGCTATATAAGGGATGTAGGctagcatttatatttgatggacttgatgagAGTCGCCTGTCtctaaattttaaaagtagatcACTAAACACTGTTGAGAAAAAAGCATCTGTGGATGTGCTCTTTACAAGTCTGGTCAAAGGGACTCTGCTTCCATCAGCTCTTGTCTGGGTCACATcacgaccagcagcagccaatcagattcctcCTCAGTATGTGGTTTTGTTCACCGAGGTGCGAGGATTCACTGACCAACAGAAGGAGGAGTACTTCAGAAAGAGATTCACAGATGAGAGTCTGTcctccagaatcatctcacacattaagacgtctcgtagtctctacatcatgtgccacattcctgtgttctgctggatcacagccacagtacttcaggatattctcactgagaataatgaagagaacatcagcacaacactcactgaaatgtacattcacttcctgAGGATACAGATGAACATGAAGAGTCAGAAATATGGCGAACAACAAGAAGGAGAATGTTCAGAGCACTTACTTTTAAATAGAGAGATGATTCTGAAGTTAGCCAAGCTAGCGTTTAAACAGCTGAAGcaggaaaacattgtgttctatGAGAAAGATCTGAAAGCATGTGGTATTGATGTGAGTAAAGATGCTGAGTTCACAGGAATGATCGCTGAGATCTTTAAGAGGGAAGTTGGACTTTATAAGACAAAGGTCTTCTGCTTTGTGCATCTGAGCGTTCAAGAGTTCCTCGCTGCAGTGCATGTGTTCACCtgttacctgaaaaaaaacaagcaagagtTTAAGTTTTTCTTTGCTGATTCACAAACTAAAGTCATACAAAATCTTACATTTCCTTTTAGAAAGGTCAAATGGCATGACTTAACAGAGAGAGCCATTGAAAAAGCAATGCAGAGTAAGAGAGGGCATCTGGACCTGTTCCTGCGGTTTCTGATGGGAATTTCACTGGAATCCAGTCAAAATCTGCTCAAaggcctgatcacacacactgaagacaccacagagagcatcaaaaaagtaactaaatgtattaaacaaaaacaaaacacgtaCTATATCTCAGATGAAGCTCtagtcaacttattctactgcTTACTTGAACTCAAGGATAATTCATTATATGAGGAAATCCAGAGTTACctcagttcaaatgaacatccaGGAAGAGATCTCTCATCTTCAATGTGCACATTGTTGACCTACATACTACTGATGTCAGAGAAGGTGCTAGATGAGTTCAACCCAAAGAGGTTCACATCAGAACAATCAGACTACAAGAGACTCATTCCAGCTGTGAGATGCTGTAGAAAAACTCTATTTGAAAGTTgtggttttgatgaaacatgctgtgaaactctgtcttctgctctacaatcatcaaaccatctgacagagctggacttgagtaacaatgatctgcaggattcaggagttaagctgctttctgatggactgaagagttcaCACTGTAGACTGAAGATACTGAGGTTGTCTGGCTGcatggtgacagaggaaggctgtggttatgtgtcttcagctctgacttcaaacccctcacacctgagagagctggatctaagctacaatcatcctggagattcaggagtgaagctgctctctaaaaaactggaggatccaaactgctcactaaataaactcaatgttgagcatggaggagaatccaggattacagcaggacCCAAGAAATgggtgtgttttttcacactggatccaaacacagcacacactcttctcattctgtctgaggagaacagaaaggTGACACGTGTGGCTCAGTCTCagtcgtatcctgatcatccagacagatttgatctgtgtcctcaggtgttgtgtagagagagtgtgtgtggacgctgttactgggagaccGAGTGGAGTGGACTTGTGtttatatcagtgtcatataagaacatcagcaggaagggaTGGGGTGAAGAGTGTATGTTTGGatctaatgatcagtcctggagtttggtCTGCTCTCCTCACAGTTACTCCTTCAGACACAATAAGATAATGACTGATCTCTCTGTGGAGCCCATCatcatcagaagaagaagaacaggagagTATGAAGATATctacagagtaggagtgtatgtggatgagagcgcaggaactctgtccttcttcagcgtctctgactcaatgagactcatccacacagtccagaccacattcactcagacactctgtcCTGGGTTTAGAGTTTATTCtggatcatcagtgaaactgtgttgatgaatcagaagagactgatgagattctacccagaatgctttgagctgcatgatgaatcagtaacagtgagatgttatgagtctcttcaagacattaatactgca

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043229814.1 True 3586 mRNA 0.41 11 357673 430746

Neighbor

gene id symbol gene type direction distance location
LOC122332499 NA coding downstream 12472 341245 ~ 345201 (-)
LOC122332501 LOC107563545,LOC107667978,LOC107575457 coding downstream 27352 319282 ~ 330321 (-)
LOC122332495 LOC107685875,LOC107671223,LOC107749047,LOC107728228 coding downstream 54809 281499 ~ 302864 (-)
LOC122332500 NA coding downstream 93022 264156 ~ 264651 (-)
LOC122332489 NA coding downstream 128740 226011 ~ 228933 (-)
LOC122332498 NA coding upstream 2174 432920 ~ 435426 (-)
G174228 NA non-coding downstream 6628 348191 ~ 351045 (-)
LOC122332502 NA non-coding downstream 114191 241687 ~ 243482 (-)
G174200 NA non-coding downstream 140331 216042 ~ 217342 (-)
G174198 rab20,LOC107715918,LOC107688770,LOC107557919,LOC107702796,LOC107721577 non-coding downstream 311767 44918 ~ 45906 (-)
G174261 NA non-coding upstream 16562 447308 ~ 447919 (-)
G174266 NA non-coding upstream 22036 452782 ~ 453021 (-)

Expression


Co-expression Network