G22394


Basic Information

Item Value
gene id G22394
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 137893 ~ 160460 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU25253
CTTGAATAAAGTCGCTATTTTGTTATTTTTGGCGCACAAAAAGTATCCTCGTTGCTTTATGGTATTAAGGTTGAACCACTGTACTCACATGAACTGTTTTAAATATGTTTTTAGTAGCTTTCTGGGCATTGAAAAAGGGACTGTTATTGCTGGTGATGCAGGCCTTACTGAGCCATTTGATTTTATTAAAAATATCTTAATTTGTGTTCTGAAGATGAACGAAGGTCTTACGGGTGTGGAACGACATGAGGGTGAGTAATAAATGACATAATTTTCATTTTTGGGTGAATTAACCCTTTAAGATGTTCTCAGACCACACTATCATTCCAGCATTTTCCAAGATGAAATAATTCACTCTTAAATCATCTTCCTGTGCATGTTGTAAAATGTAATAAATGCTAATAGTGCATCGCATAACTAAACGTGTCATCGTTTTCAAATACCTTAATTTTTCACAGTCCACACTACAATGCAAAAAATCTCAGTGTAAGGAAGGCCAAAACAAAAAGAAAAGTATCTGGGTTAGTGTAAACGTAGACCCTCTGGCATACACACTACCACTCACTCATATCCTCAATCCTCAGTCCTGAAGACACTGATTAGCTGGTTCAGGTGTGTTTAATTAGTTCCTGGAGGGCCACTGTCCTGCAGAGTTTAGCTCCATCCCTGAGTTTGACACACTTGTTCAAAAGGTTCTTACACTCTGAACTAAAATGGCAGACTATGAATAGAAGGCATACATGGGGAACATTCTTCAGAAGACAGTCCAATCTCCCTCAATTCACTTGCACAGAAATTTTCCTCAGTCACACAGACTTTGAGAAAACTCACTCTTTCCTGCTTTGTGTAATTGTTTGTTTTTAATGACACCTTGTAATTCATCTGTCGACCAGTTGTCAGGTTTTGAAGGCAGACTGTTGAATTATTACATTTGTTTCGTTTGTAACAAATTGTTGTATTGTTATTAAGTATACTGCTGCAATTGTTTCGAAAGCATTACTAGTTTTAAAAATGTTTTTGGCTTTTTATAAAATAAAAACTAATAAACATTCTTTTGCAATTAAGAGACTGGTTATTTGTATATAACAACATTCAACATTATTTATAGATAATTTTATTGTTTTTACACAAGTAAATGTCCTTCATTAAACATTAAAAAGCTAAAAACAATACAGAAGATTTTATATAAAATCATGGTTATAAACAGTATTTTATTAACGGAAAATAACCGTATTTTTACGAGACATCCCCCCCCCCCATTATTTTACGGTATATTTCTGGCGTCCCTGCCGCCAGAAAATACCGTTTTTTTACAGGATTTTTTTTTTACAGTGCAACATCCACTTGGGATGCATCCTAGGTGACATAGAACAATAGCCTTATTCCCATGAAGAGCTTAATGCCTAGAGGCACCAGAGAAGGCCCCAAAGCTTCCATGCTCTACTGAAATACTTACCTGAAAGAGAGAACTCCAGCATTAGGCCAGCCATAGCCTCCCAGCTACAGGACAGGTCCCTGAGAGCAGAGCTATTCAGGGGAGTTCGCAGATGTAATCCACGGTACTCTGTCCAGCATAAGCTGAAGCAGGCAAAAGATGGGATATGAAGTTCCTCACAGCAACTCTACACATTCTCTCTCTGTCATATCTGCCTACTAGTATCCCAGCCTCTGCCAAATACTTACCTGTAAAGCTCTTAAGGAGTGGCCTTACCAAAGGGAGCAAGCAAGGTAACACCTCTGCAGTCTAGTCCTCAGACTTAATGTGCTGGAGAGGGTGACAGATGAGAGAATGGTCAGGTTTGCATCAGCTGAGTCCCAGGTGACTCGTGTCAACCTATAGGAATACGACGCCTATCACAGCATCCATATATAAGCTCCTCAGTATTATCAGCAGCTATCGCATTTCTCAGGAGCTAATTACCCTCCTCCATCCCCAGCTCCTCCTCTCGTCAGTCAGGATTTGGCTTTATGATTCCCCTAAATCAGACTAATTCTTGAAATATGTGTACGTTAAATTAGTGACGTTAATGGTATCTGCATATGTTGGTTCTTTTCTGTTTACCCTAAGAGGGGTTAGTGCTGCTCTCCTTGCTCTTATCCAATCTAGGCTGCATGGATGCACAGGGAGTTCTTGCCCAGAACAGAACCATACCGCCAATACAAACTCTATGCATTATCAATCATATTTGACGATAGTGGTCCTGACAGAATTCTGTTCTGATAACCACCTCATTCTGCAGACCATCAGGTAAGAGTGCCAATGTCATACATCTACACTATTGCTCACAATGTTAGAGGGGCAACTGGCAAGAAAGTAGGATGCCTATAGGCATACTAACAGCTTTCCACTCTGCTAGCTACAGATGATAAAGTGGGGCGCCTAAAGCGATAGAATTTACTTTTTGATCAGTCACAATGCCCATTCCTTGCGGACCTCACAGACTAATACTCTGGAGGGGGTGCTGATGGAAGTGGAACGCCTGAAGCAATTTTAGAATACCACTCTACTGCTCCATCAATCACCCATTCCTCACTGTTCACCGGGGAGATGAGCTAACACGAAGCAAAGACGGAAGACATACAGAGATGGTTGCCAGTAAACTAGGACCTCTATCTGGTAACCTTCATACACATGCTAGAAACTTAGGTGTTACTTTTGATTCTGCTTTTACTTTTAAAAAACAGATCAATGCTGTGGTCAGAAGTTGTTTCTATCATCTAAAGAATATAGTTAAAATGAAGTCATTCTTATCATCCAAATATATGGAGTCTGTAATACATGCTTTCATTTCATCCAGATTGGATTATTGTAATGTATTGTACTTGAGTGTTTCACAGTCACTACTGTCATGTCTTCAGCTTGTCCAAAATGCTGGTGCTAGACTGTTGACTGGAACAAAGAAGAGGGAACATATTTCACCAGTGCTGGTCTCTCTCCACTGGCTCCCAGTCAAATATCATATTCAGTTTAAAGCATTATTGTTTGTTTACAAGGGTCTGCATGGTTTGGCCTCCATATATTTCTGATCTTCTTACATTTTATCATAATACATCCAGATAACCTCAGATCAACCAATAGTTTATGGATGACTTCCAAAGACACGTCTCAAACTGAAAGGAGATCATGCCTTCTCAGTGGCTGCTCCACAGCTCTGGAATAATTTGCCACTTTACATAAAAACTGCACCAACATATGATGATTTTAAATCTCTTCTCAAAACTCATCTATTTATTATTTCCTATGGTTAAAATGTGTGTGCATTGTCTGTGATTGTGTTTGTGTCCTTATTTTAATTATGCTATTTGTTTAAACTCTGTACAGCTGTTGTTTTTAAATGTGCTTTTTAAATAAATGTGACTGACTGACTAACACTATCTATCGACAGCATTAACACCTCCTGTTGCACTGCAGGGAGGGTAACCAATATGAAAAATGGGTTGCATTACCTCACTGTGACTAGCCATCATTGCAGCCATAGAATGGCCAATGGCATGAGCCATGGAGCACTAACTTAATAATAATAATATGCTGGGCCAGTGGAGGAGACATACTTACTGATAACACCGGTCTCAACTACCAACATCGGTGATTCCGATAACATGCTCTCAGCCAGATCAGAGCAGGCTTCCTGACCCAGCAAGAGAGCTAGTGAGAGAAGCCTGAAGAAGGGAAACACCCTTGGAAAACTCCTCCGCCAGCTCCACCTGTGATCCCCATGATCAAATCTGTCATGGTGCCTCTGCAACCACGTGGCCAGAACCACAAGGTGCAGATGCTTGACTTTCATCCCTCGAGTAGACAGTCAAGTGAGAGCAGAGCTTCCTCACTGTGAACTTATCACAGTGAGTCCATCAAGCTCCCTCGAGAGCCAAATGGACATGCTCTTGTAGTGATATTTGCTCAAAGGGGAAATATTAATAATTATTCATAACTCCTTATGATTATTCATTATGATTAATTATGAATATTTAAAACATATGATATATTAACATTACATTTAATCAATCAGTTCATCCTGTGAACACCCAGTATTTATTATTAATTAATTCTTTCTTAGCAGTTACAGTGCTTAGAGCTTGTAATAGATTCGGATCACTTAAGTGACAGCTATTTACAGATGAGGAGTCAGAACCAAATATGTACAGGTGCTGGTCATATAATTAGAATATCATCAAAAAGTTCATTTTTTTATTATAAATTATTTTTAAAAATGAAACTTTCATATATTCTAGATTCCCTACATGTAAAGTAAAACATTTCAAAAGTTTTTTTTTTTAATTTTGATGATTAGAGCGTACAGCTCATGAAAGTCCAAAATCCAGTATTTCAAAATATTAGAATATTTCCTAAAATCAATAAAAAAATGGATTTGCAAAACAGAAAAGTTAAAGTTCTTTAAAGTATGTTCTTTTGTGCACTCAATACTTGATCGGCAGGACATATTACAGCAAATGACTTGCTCCTAGCCCAAATTACTGCATCAGTGAAGTGTGGCATGGAAGTGATCAGCCTGTGGCACTGCTGAGGCACTATTGAGCCTTCAGATCATCTGTATATTGTTGGATCGACTGTTTCTCATC
>TU25254
CTTGAATAAAGTCGCTATTTTGTTATTTTTGGCGCACAAAAAGTATCCTCGTTGCTTTATGGTATTAAGGTTGAACCACTGTACTCACATGAACTGTTTTAAATATGTTTTTAGTAGCTTTCTGGGCATTGAAAAAGGGACTGTTATTGCTGGTGATGCAGGCCTTACTGAGCCATTTGATTTTATTAAAAATATCTTAATTTGTGTTCTGAAGATGAACGAAGGTCTTACGGGTGTGGAACGACATGAGGTTGATGACGCTGATGTTCCCCTCCATCCTCCCCACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU25253 False 4581 lncRNA 0.51 2 137893 142513
TU25254 True 287 lncRNA 0.38 2 137893 160460

Neighbor

gene id symbol gene type direction distance location
CI01000003_00011191_00013812 NA coding upstream 123995 11191 ~ 13898 (+)
CI01000003_00007611_00010967 NA coding upstream 126926 7611 ~ 10967 (+)
CI01000003_00266342_00275005 NA coding downstream 105882 266342 ~ 275312 (+)
CI01000003_00323130_00336023 CLDN15LA coding downstream 162407 322867 ~ 336168 (+)
CI01000003_00355244_00360638 SAGA coding downstream 194784 355244 ~ 360793 (+)
CI01000003_00380494_00385991 PROC, PROCA coding downstream 220034 380494 ~ 386091 (+)
CI01000003_00390997_00406970 WDR33 coding downstream 230437 390622 ~ 408312 (+)
G22339 NA non-coding upstream 101275 33154 ~ 36618 (+)
G22337 NA non-coding upstream 110323 27263 ~ 27570 (+)
G22432 NA non-coding downstream 45909 206369 ~ 206686 (+)
G22433 NA non-coding downstream 46521 206981 ~ 207272 (+)
G22434 NA non-coding downstream 47123 207583 ~ 207922 (+)
G22435 NA non-coding downstream 51722 212182 ~ 213447 (+)
G22436 NA non-coding downstream 53809 214269 ~ 214693 (+)
G22420 NA other downstream 19071 179531 ~ 189439 (+)
G22578 NA other downstream 764343 924803 ~ 925248 (+)
CI01000003_01863421_01867859 NA other downstream 1702808 1862854 ~ 1868137 (+)
G23870 NA other downstream 2120200 2280660 ~ 2285641 (+)

Expression


Co-expression Network