RNA id: TU25254


Basic Information

Item Value
RNA id TU25254
length 287
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G22394
representative True

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 137893 ~ 160460 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGAATAAAGTCGCTATTTTGTTATTTTTGGCGCACAAAAAGTATCCTCGTTGCTTTATGGTATTAAGGTTGAACCACTGTACTCACATGAACTGTTTTAAATATGTTTTTAGTAGCTTTCTGGGCATTGAAAAAGGGACTGTTATTGCTGGTGATGCAGGCCTTACTGAGCCATTTGATTTTATTAAAAATATCTTAATTTGTGTTCTGAAGATGAACGAAGGTCTTACGGGTGTGGAACGACATGAGGTTGATGACGCTGATGTTCCCCTCCATCCTCCCCACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25183 lncRNA upstream 101275 33154 ~ 36618 (+) True G22339
TU25181 lncRNA upstream 110323 27263 ~ 27570 (+) True G22337
TU25178 lncRNA upstream 125927 11737 ~ 11966 (+) True CI01000003_00011191_00013812
TU25294 lncRNA downstream 45909 206369 ~ 206686 (+) True G22432
TU25295 lncRNA downstream 46521 206981 ~ 207272 (+) True G22433
TU25296 lncRNA downstream 47123 207583 ~ 207922 (+) True G22434
TU25297 lncRNA downstream 51722 212182 ~ 213447 (+) True G22435
TU25298 lncRNA downstream 53809 214269 ~ 214693 (+) True G22436
CI01000003_00011191_00013812.mRNA mRNA upstream 123995 11191 ~ 13898 (+) False CI01000003_00011191_00013812
CI01000003_00007611_00010967.mRNA mRNA upstream 126926 7611 ~ 10967 (+) True CI01000003_00007611_00010967
CI01000003_00266342_00275005.mRNA mRNA downstream 105882 266342 ~ 275312 (+) False CI01000003_00266342_00275005
CI01000003_00323130_00336023.mRNA mRNA downstream 162407 322867 ~ 336168 (+) True CI01000003_00323130_00336023
CI01000003_00355244_00360638.mRNA mRNA downstream 194784 355244 ~ 360793 (+) True CI01000003_00355244_00360638
CI01000003_00380494_00385991.mRNA mRNA downstream 220034 380494 ~ 386091 (+) True CI01000003_00380494_00385991
CI01000003_00390997_00406970.mRNA mRNA downstream 230437 390897 ~ 408312 (+) False CI01000003_00390997_00406970
TU25282 other downstream 19071 179531 ~ 189439 (+) True G22420
TU25360 other downstream 230553 391013 ~ 395214 (+) True CI01000003_00390997_00406970
TU25485 other downstream 764343 924803 ~ 925248 (+) True G22578
TU26311 other downstream 1702808 1863892 ~ 1866921 (+) False G23315
TU26312 other downstream 1702808 1864690 ~ 1866921 (+) True G23315

Expression Profile