XLOC_000069 (fastkd2)


Basic Information

Item Value
gene id XLOC_000069
gene name fastkd2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6225493 ~ 6272146 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000139
GTTATGTGCGTTGTGCCCTCCCTGCTCCTGTCATGGCTGCGCTCATGGTGAAAGCGATAGACATGTGAACGCAACAATCAaagATTTAACAAGTGATCCTGTCAGGTGCATTTGAGGAAACTAACAGCCAAAACAAGTCACACCATGTCTGAAGCTTTAATGAATCCCTCTGTCAGGAAAACATGAATGTGTATAAATCAGGCTTGGATATGCTCAGATTAGCTCTGAAATCCACATCACCGTGGAAATGTGACTCTTTTATACGGACACAGGCCTCTTCATGCTATAAAATCATTAGCATTGTTGCATCACCTCAGTTGGggagaaaaaacacacactctttcaAACAAATCCGGTTTTACAGTCAACACAGTAGTCAAGATGCTGTTGATCTGCAGGTTAAACAAACCACAGAGGCTTTTGAAGTCTCTGATCAAGCGGACAGCACTCCTTTCAGTGCTCATTTACAGAAATGTTCTTGCCCCACGGATGTGTTGGATGCAGTAAAGCAGTTTCCAGCTTCACAGAATGACCTGAGCAGCATCTTCTCACGCATGCGGGAGAGCACCAAGAAGATGACTGCAGAGCAGCAGCGCTGTGAGCTCCAGCTGATGTTTGAACACCCGGGCTTTAGGGAGGTCTGTGAGCGGGTGGTCAGTGATGCCTGGAGGATGAGGTGTGATGATTTGGCTTACACTCTGCTGGCCATCATCAACCTGGGAGTTTCGCAACACACGCGGATTGTGCAGACGCTGCTGAGAGTTGTACAGgAGCGTCTGAATCAGTTTGATAATCGATCTCTTTCGGTTTTGGCTGCTGGCATTCAGCAGATGGAGAACGGCAATAATGTTCAAGCCCTGAGAGAAGCTTTAGGGTTGCTGCTGAAGGACCGTGTTCCTGAGATCAGTAATGTGGTTGTCCTGCAGAACATGATGCGTGCGATGGGGAAAAACTCTCCCAAAGAGCTGAAGATGCAGCTGGCGATAAAGACTCTGTCGTTGGCAGATGAGTTTAGTCCACCAAACACCCAGTATGTGTTCTTAAGCCTGGCCGCCATGGACCTGAACTTCAAACCTCTTCTGAACATCTGCAGCAAGAACATTGCAGAAAACGTTCATGAGTTTCCCATCAGTCGGCTTGTGATGGTGTTGAAGTCCTGCTATGAGCTTCAGTACAGGAACTACAGCCTCTTCAGCTCCATCTCTGAATACATGACCAACACATTTGATATGTGGTCCAACAAAAAGGTGATTCTCTTGCTATTAACCTTTGAGGATCTCTACTTCAGACCTGTGCACCTGTTGGATGCGTTTGCAGAGAGAATCATCCAGAAACCTGACAGTCTGACCCTGAAAGACCTTCTCAGcgttttaaaagtgttttcaatGCTCAATCATGACctgaaagagagaaagacagaGTTTCTGGACTGTATAACAGAGGTCTTGGAGTCATACCTTCCCAAGATGACTCCCAGTGAGCTGCTGAAAGTGAATTATTATCTGGCGTTGATGGAGCACTTTCATCAAATGCTACTGGATAAACTGATGCAGCAGGAAACCCTGGAACAGCTCCTGCAGACAGACAAGCCATCTATTAAAGTCCTGAGATGGCTGCACACGATAGATCTGTGTTTGCAACTGGATAAACCTCAGCTGCCGTCCTTCACGAGCTCCAAACCTCTGAACATCACAGTTCCTGCTTTTGAGGCCACAGCCAACCAGGAGATGCTCAGTGCGGTGAGGAGCATTGTGGGAACACATGCTGTTCAGGACAGTGTGCTGGAGCAGAGCATCTATTTCATTGaCTGTGTTATTACGCTGCCTGGAGAAAAAGTAGAAACATGTGGCCTTCATGAGGATTGCGGTTCACCTGAATGTAACCAAAG
>TCONS_00000140
ATGCTCAGATTAGCTCTGAAATCCACATCACCGTGGAAATGTGACTCTTTTATACGGACACAGGCCTCTTCATGCTATAAAATCATTAGCATTGTTGCATCACCTCAGTTGGggagaaaaaacacacactctttcaAACAAATCCGGTTTTACAGTCAACACAGTAGTCAAGATGCTGTTGATCTGCAGGTTAAACAAACCACAGAGGCTTTTGAAGTCTCTGATCAAGCGGACAGCACTCCTTTCAGTGCTCATTTACAGAAATGTTCTTGCCCCACGGATGTGTTGGATGCAGTAAAGCAGTTTCCAGCTTCACAGAATGACCTGAGCAGCATCTTCTCACGCATGCGGGAGAGCACCAAGAAGATGACTGCAGAGCAGCAGCGCTGTGAGCTCCAGCTGATGTTTGAACACCCGGGCTTTAGGGAGGTCTGTGAGCGGGTGGTCAGTGATGCCTGGAGGATGAGGTGTGATGATTTGGCTTACACTCTGCTGGCCATCATCAACCTGGGAGTTTCGCAACACACGCGGATTGTGCAGACGCTGCTGAGAGTTGTACAGgAGCGTCTGAATCAGTTTGATAATCGATCTCTTTCGGTTTTGGCTGCTGGCATTCAGCAGATGGAGAACGGCAATAATGTTCAAGCCCTGAGAGAAGCTTTAGGGTTGCTGCTGAAGGACCGTGTTCCTGAGATCAGTAATGTGGTTGTCCTGCAGAACATGATGCGTGCGATGGGGAAAAACTCTCCCAAAGAGCTGAAGATGCAGCTGGCGATAAAGACTCTGTCGTTGGCAGATGAGTTTAGTCCACCAAACACCCAGTATGTGTTCTTAAGCCTGGCCGCCATGGACCTGAACTTCAAACCTCTTCTGAACATCTGCAGCAAGAACATTGCAGAAAACGTTCATGAGTTTCCCATCAGTCGGCTTGTGATGGTGTTGAAGTCCTGCTATGAGCTTCAGTACAGGAACTACAGCCTCTTCAGCTCCATCTCTGAATACATGACCAACACATTTGATATGTGGTCCAACAAAAAGGTGATTCTCTTGCTATTAACCTTTGAGGATCTCTACTTCAGACCTGTGCACCTGTTGGATGCGTTTGCAGAGAGAATCATCCAGAAACCTGACAGTCTGACCCTGAAAGACCTTCTCAGcgttttaaaagtgttttcaatGCTCAATCATGACctgaaagagagaaagacagaGTTTCTGGACTGTATAACAGAGGTCTTGGAGTCATACCTTCCCAAGATGACTCCCAGTGAGCTGCTGAAAGTGAATTATTATCTGGCGTTGATGGAGCACTTTCATCAAATGCTACTGGATAAACTGATGCAGCAGGAAACCCTGGAACAGCTCCTGCAGACAGACAAGCCATCTATTAAAGTCCTGAGATGGCTGCACACGATAGATCTGTGTTTGCAACTGGATAAACCTCAGCTGCCGTCCTTCACGAGCTCCAAACCTCTGAACATCACAGTTCCTGCTTTTGAGGCCACAGCCAACCAGGAGATGCTCAGTGCGGTGAGGAGCATTGTGGGAACACATGCTGTTCAGGACAGTGTGCTGGAGCAGAGCATCTATTTCATTGttttagaCTGTGTTATTACGCTGCCTGGAGAAAAAAAGTCTAATATAGAAGCTGATTTCAGGATTGCAGTGATCTGCGCTCAACCTAATTCCTTTTGCTTCGGTACGACGCATCCTCGAGCCAGCTTGGTTATGAAACTTCGCCATCTTGAAAAACTTGGTTATCAACCTGTCTTGGTTCCCATCAATGAGCTGAACTCTAAAACTGAGGAGGAGAAGATCAAGATGCTACGGACACTCATTTTTCCAGCACATGAATCACTGTTGTCTTTTACAGTATGTGACATTAAG
>TCONS_00000141
GAAGAAGATTCAGAAACATTGCTGCAGCAGCAGGACTCGTGCAGTGTTGTCTTTTACAGTATGTGACATTAAGCAGTAAAACTAATAATTGCCTACAATGTCTGAACTGAACGACTATTTAGAAGGTAAGATTACTTTCGAGGAGTTTGAAAAGCGCagagaagaaagaaaagcaaAGGATAAGgagaAGAAGGGAAATGTGTTAAATGATGAAGAAGCTGCTGTTCAGGAGGACGAAGCTCCTTCCACCTCGAAACAGCCTGTCAAAGCAAAACGGAAACGCAAAACAGAGACGACGGAAGAGGGAGTCAGTCCATCTGTCCAGCAAGCCTTTGCTTCCATGATCGGAGAGGGActggaggagtgtgtggatgatgatgatgatgatgaagatggaaAGATGGAGTGGAAAGACATTGAAGAAGAGGATGGAGACgacgacgacgatgatgatgatgatgataataatgatgctgatgaagaggaggaggacgGCAATGGAATCACACCTGGAGATGTGTTTGCCTTAGAAATGGAGTTGAACCGAGAAAATAAGAAAATGATGAAGGAGAGACGTCACCGTAGTAAGTTACCGCGGGCTCTCAGAGGACTCATGGGAGAGGCCAACATCCGCTACGCTAGAGGAGATAAAGAGGATGCCATTCTGATGTGTATGGAGATCATTCGGCAAGCTCCTGTGGCATACGAGCCGTTCTCCACTATGGCTATGATCTATGAGGATCAGGGAGACATGGAGAAAGCACTTCAGTTCGGTCTGATCGCTGCTCATCTGAACCCCAGTGACTGTGAAGAGTGGGTCAAACTGGCAGACATGTCCCTTGAGCAGGACAACATCAAGCAGGCCATCATCTGCTACACTAAAGCAATTAAATACGACTCCAGTAATGTGCAGTACCTGTGGGAGCGCTCCAGCCTTTATGAGCAGGTCGGGGAGCACAAACAGGCCATGGATGGGTACCGCCGCATCCTCAGCCTGCTGCCACCAACCGATGGAGAGCATTTCATGCAGCTCTCACGAGACATGGCCAAgaGTTACTATGAGAGCAGCGAGTTGCCGTCTGCTATCGGGGTCATGGAGGAAGCTCTAGAGAGACATCCTGAACTCGTCACACATGAGTGTGTTAATATGGCCGCTGAACTCTTCATTGCCAACCACCAACATGATAAAGCTCTAGAGGCGCTGGTGAAATTTTGTGGCATCGTCCTTAAAAGACAGGAGAAGGTTGAGACCAAGCTAGAGGAGCAGACTCTAACTCAAGACACAGAAGAAGACACGAAGGAGGACACAGAAGAGGAGAAAgGGAAAGTCATAGAAGTGGTGATTCCTGATGCAGTTCCAATAGACATCAGGGCGAAGATGATGGTGTGTCTCATCCACCAGCAGGTCTTCAAACCTCTGGATCCCATGCTGACGTCTCTGATGGAGCAGAGCCCGGAGGAGCTGGGCGATCTGTATTTGGATGTAGCCGAGGCTTTTATGGAAGAAGGCGAATATAACTCTGCCCTGCCGCTGCTCTCTGCACTCGTCTGCTCTGAGAGATACAACCTGGCTGTTGTTTGGCTCCGACATGCAGAGTGTCTAAAGGCACTGGGTCATTTGGAGGTTGCTGTGAAGAGCTACAGTAAGGTTGTTGAAATGGCTCCGCTGCATTTAGAAGCTCGTCTGGCTCTCTCCACCCTTCAGCAGCAGTTGGGTCGACCCAACATGGCCCTCGAGGCCCTGGAGCCCATGTATGATGCCGAAACCCTCGCACAGGACTCTTCAGCTGCACAGCAGGAGCTGAAGCTGTTGCTGCATCGCTCGACTCTCTTGCTTTCTCAAGGACGGATGGATGATTACATTGATACAGTATTGACCATGCTGTCCATGTTTCTTAAGGTGGCGATGGTGAGGGCTCAGGTGTGTGTTGTTGCTGACATGTCCTCGGGTGTCAAACATCTGAAACTTATAAAAGTGTCCCGCAGTGCACTGACGGAGATTGTTGACCAGGAGGCAGCTTATCTGGATGTGACTGGTAAGACGAGTGTCCTCTCTAAAGACGACTGGTGGAAGCTGTCTCTCCGCTGTTTGTCTGTATTGTGTGAGGAGAAGCGCTTCGCTGAGGCAGAGTTATTAGTGGACTCAACTTTAGAGTATTACTCCTTCTATGATGACCGTGTGAAGCGGAAAGAGCTGGAATACCTCGGTCTGTCCGCTGCCTTCCTCGACCACAACTTCCGCACAGCCTACAACTACATAAGGCTGATGTTAATGGACAGCGTGGAGCGGCCTCAGCTGTGGAACGTGTTTAATCAGATCACTCTTCACTCTCAGGACGCCAGACATCATCGCTTCTGCCTGCGCCTCATGCTGAAGCACCCGGATAACCACGCGCTCTACCTTCTCAACGGACACACCTCGCTGGTCTCTGGGACGTTCAAACATGCACTCGGTCAGTACATGCAGGCGTTCAGAAACGAGCCTGATCATCCTCTTCATAGCCTGGCTATTGGACTCACGTTCTTCCACATGGCTTGTCAAAAGTTTGTCATGAAAAGACATTCGCTCACTGTGCAGGGTTTCTCTTTCCTGTGGCGCTATGTGGATCTCCGAGGTCAGTGTCAAGAGTCTCTGTATAATCTTGGCCGGGCTTTACATCAGCTTGGACTCACTCATTTAGCCATTCACTACTATGAGAAAGCCCTCACCCTCCCCCCACTCAAAATGGAGGGGATTGAGGACGATCAAGTGGACTTGAGAAGAGAGATTGCCTACAACTTATCCCTTATTTACCAGTCCAGTGGTAATAAGGACATGGCCCGACACATCATCTATACTTACTGTACTATATGATCCTGTGATCCCATCTAATGTTGCTTTTGTAAATGTACATTTCCATTTTCTGttcaataaaatgttatatttattata

Function

symbol description
fastkd2 Predicted to enable RNA binding activity. Predicted to be involved in mitochondrial RNA processing and regulation of mitochondrial mRNA stability. Predicted to be active in mitochondrial matrix and ribonucleoprotein granule. Used to study combined oxidative phosphorylation deficiency. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency. Orthologous to human FASTKD2 (FAST kinase domains 2).

GO:

id name namespace
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-040914-80 Predicted to be involved in transcription by RNA polymerase III. Predicted to be part of transcription factor TFIIIC complex. Orthologous to human GTF3C3 (general transcription factor IIIC subunit 3).
ZDB-GENE-090313-7 Predicted to enable RNA binding activity. Predicted to be involved in mitochondrial RNA processing and regulation of mitochondrial mRNA stability. Predicted to be active in mitochondrial matrix and ribonucleoprotein granule. Used to study combined oxidative phosphorylation deficiency. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency. Orthologous to human FASTKD2 (FAST kinase domains 2).

Ensembl:

ensembl_id ENSDARG00000043247 ENSDARG00000074031

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000139 False 1888 mRNA 0.47 11 6225493 6240518
TCONS_00000140 False 1887 mRNA 0.46 13 6226135 6243978
TCONS_00000141 True 2932 mRNA 0.49 18 6243906 6272146

Neighbor

gene id symbol gene type direction distance location
XLOC_000068 retreg2 coding upstream 14775 6189949 ~ 6210718 (+)
XLOC_000067 cnppd1 coding upstream 39961 6161930 ~ 6185532 (+)
XLOC_000066 abcb6a coding upstream 66884 6135176 ~ 6158609 (+)
XLOC_000065 NA coding upstream 426401 5795013 ~ 5799092 (+)
XLOC_000064 NA coding upstream 496809 5706970 ~ 5728684 (+)
XLOC_000070 LO018629.1 coding downstream 35159 6307305 ~ 6329292 (+)
XLOC_000071 hecw2b coding downstream 84913 6357059 ~ 6366066 (+)
XLOC_000072 NA coding downstream 107732 6379878 ~ 6554470 (+)
XLOC_000073 NA coding downstream 126064 6398210 ~ 6403223 (+)
XLOC_000074 si:ch211-93g23.2 coding downstream 368291 6640437 ~ 6646356 (+)
XLOC_000059 NA non-coding upstream 911898 5311479 ~ 5313595 (+)
XLOC_000057 NA non-coding upstream 1195338 4901460 ~ 5030155 (+)
XLOC_000056 FO744838.1 non-coding upstream 1545016 4598060 ~ 4680477 (+)
XLOC_000076 NA non-coding downstream 392887 6665033 ~ 6668339 (+)
XLOC_000077 NA non-coding downstream 487037 6759183 ~ 6760930 (+)
XLOC_000078 CU302223.1 non-coding downstream 515544 6787690 ~ 6787804 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000299_03237334_03244737 GTF3C3 coding CI01000299 null 3237334 ~ 3244815 (+)