CI01000004_03426800_03430289 (GBG12, GNG12, GNG12.L, GNG12A)


Basic Information

Item Value
gene id CI01000004_03426800_03430289
gene name GBG12, GNG12, GNG12.L, GNG12A
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3425462 ~ 3431535 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_03426800_03430289.mRNA
GCATAAATGAAGTTGAATAGCTTAAACTGGGCAGTTGTAGTGCAGACACAGTCTCCTGCAGTTTGTCGACTGTGGTCTGTATATTCTGGATGAGCATTTGTGATTATGTAAGCTTTCCCCATATAGAGCACTGTAACACTGTCCTGGTTTTGTAAGTGTGTGACTTCATGCCACTGCCAAACTTCCTCAAGCCAGGTAAAGTAGGACATGTCCCATCTGAAAAAAAATGTTTTGTCTTTGAGGACTAGAAACCTAAAACACCTTCAGACGAAAACAGCTCTGCGATTATTTCCTCTTCCTGTACCCAGAAGTCAGTGAAAATAAACCTTTTGTATTTTGCTATAGTGTTTATGAGTAGACTATATCATTGTGCTTTACTCGTGAAGTATTCCAGTTGTCTTTAGGGAATGCAAGAAGCTGGAAACAGATTTTACATAATACATTACAGGAACTTTTGAATTAGTTATTATGCTGTTTTGATTCACCTGACCTGATTACAGACGCGTTTCTTATGGCGTAGAATGTGTTCTTGCAAGTAAAATCGACTGAGAACAGAATGCAGAGAGATATTTTTATAAACTGAAAAAAAATAAAATCATAACTAGATGATAAGAAATCTTAACTTGACCCATCCCTGCTTTAAATGAAGAAGCTATTCATTCATTTTATCCTGTTTATCCTGTTAAAAGATTCTAGCCTTTCAGGTTTGATTTGCATGAGTGGCATAATATATTTGAAATGAAAGCAAGGAATGACAGAAATGTATATTAAATAGTACTGTCATTATGATGAATTTAAATGTGGTTGCTATTAGCTACTAAAAGCTCATGGCATAATTTGTTTTCCACAGAACAATCACTTGAATTCCAGTATTACTTTGCTTCCTGAACAAGTTTCGACATTTTATCTGCAGAGAATTAAGCATCAATTGAGTATCTGTCAGTAAGTAGCTATTGTGTATTGAGTTTATAACCTTCTAGTTTGTGTGGGTAAGGGGTGTGGGACTGTAGAGGGCAGTACAGAATACTGAAGTCCCTGTTAACTGATGACCGTACAGTCAGATGTTTTTATTTTAGGAAGACTGTTTTCTTTTGCATTCGTTTTTGTAGAATTGTTCTAGATTTCATTTGTTACTGTATAACAAGTTTGGAGGAAGGATTTGTCAATGCGATGTTGTCATAACTTTCTTCCGCTGTATGCGTCAGATATGTTCTGTTCTTTGACACTGGCATATAACAACATATAAGTGTTTTATGACATCTGTAGATTCTGTAACTGCATGTTTTGTGTTTGTGTGTTTTTTGTTGCAGTTATATGGTTTCAAAAATGTCCTCTAAAATGGCGGGCTCAAACAACCTGGCACATGTTAGGAGGATGGTACAGCAGCTGAAAGTCGAGGCCAGTATTGAGAGGATAAAGGTATCCAAGGCCTCTGCTGACCTCATGCGTTACTGTGGAGAAAACGCCAAATACGACCCCCTGCTCATGGGCATCCCTGCCTCAGAAAACCCCTTCAAGGACAAAAAGCCCTGCACTATATTGTAGTGTAACTAACACTACGGTCGTCTTATTTAATTACTTCTACTCAACTTTGCCTTAAGTCCAGCTCTAGCTCCTTAGTATAACTTTGTGCCATGTCTTAACTATATTTAGCTCTTACAGTATTTATTACTGTAA

Function

symbol description
gng12a Predicted to enable G-protein beta-subunit binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in plasma membrane. Predicted to be part of heterotrimeric G-protein complex. Orthologous to human GNG12 (G protein subunit gamma 12).
gng12 Enables PDZ domain binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Located in extracellular exosome.

GO:

id name namespace
GO:0005834 heterotrimeric G-protein complex cellular_component

KEGG:

id description
K04347 GNG12; guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_03426800_03430289.mRNA False 1677 mRNA 0.37 2 3425462 3430421

Neighbor

gene id symbol gene type direction distance location
CI01000004_03415537_03416073 NA coding upstream 9264 3415042 ~ 3416198 (+)
CI01000004_03378562_03405135 WLS coding upstream 19461 3378562 ~ 3406001 (+)
CI01000004_03361436_03375825 SCINLB coding upstream 48857 3360918 ~ 3376605 (+)
CI01000004_03324524_03348961 CCDC18 coding upstream 76349 3324524 ~ 3349113 (+)
CI01000004_03311105_03322167 MTF2 coding upstream 102660 3311105 ~ 3322802 (+)
CI01000004_03432787_03433110 NA coding downstream 2366 3432787 ~ 3433454 (+)
CI01000004_03496175_03497985 DMBX1, DMBX1A coding downstream 64325 3494746 ~ 3498384 (+)
CI01000004_03504401_03504700 NA coding downstream 73857 3504278 ~ 3504932 (+)
CI01000004_03550525_03552621 PTGER4C coding downstream 119908 3550329 ~ 3553423 (+)
CI01000004_03592655_03592917 NA coding downstream 162234 3592655 ~ 3592917 (+)
G26199 NA non-coding upstream 115431 3309796 ~ 3310031 (+)
G26187 NA non-coding upstream 137482 3287606 ~ 3287980 (+)
G26186 NA non-coding upstream 139300 3285826 ~ 3286162 (+)
G26185 NA non-coding upstream 142298 3282904 ~ 3283164 (+)
G26184 NA non-coding upstream 145368 3279893 ~ 3280094 (+)
G26317 NA non-coding downstream 152123 3582544 ~ 3582765 (+)
G26276 NA non-coding downstream 155364 3585785 ~ 3586457 (+)
G26233 NA non-coding downstream 156414 3586835 ~ 3589187 (+)
G26349 NA non-coding downstream 225392 3655813 ~ 3656027 (+)
G26354 NA non-coding downstream 236511 3666932 ~ 3667212 (+)
CI01000004_02745885_02768971 NA other upstream 666524 2745885 ~ 2769135 (+)
G25992 NA other upstream 688694 2736536 ~ 2736768 (+)
G25882 NA other upstream 852413 2548075 ~ 2573049 (+)
G25329 NA other upstream 1339755 2083057 ~ 2085707 (+)
CI01000004_01867166_01868986 C7H1ORF21 other upstream 1552104 1867166 ~ 1868986 (+)
G26245 NA other downstream 78596 3509017 ~ 3522393 (+)
G27805 NA other downstream 1942404 5372825 ~ 5373803 (+)
G28165 NA other downstream 2302168 5732589 ~ 5733001 (+)
G28302 NA other downstream 3039607 6470028 ~ 6502087 (+)
CI01000004_03275086_03275655 RPL5 coding upstream 132841 3275086 ~ 3275702 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 misc CM030140.1 CM030140.1 9700167 ~ 9750777 (+)
mexican tetra (Astyanax mexicanus) G278796 NA non-coding NW_019172384.1 APWO02001982.1 45365 ~ 52429 (-)